Target Bioconjugation of Protein Through Chemical, Molecular Dynamics, and Artificial Intelligence Approaches DOI Creative Commons
Sk Jahir Abbas,

Sabina Yesmin,

Sandeepa Kulala Vittala

и другие.

Metabolites, Год журнала: 2024, Номер 14(12), С. 668 - 668

Опубликована: Дек. 2, 2024

Covalent modification of proteins at specific, predetermined sites is essential for advancing biological and biopharmaceutical applications. Site-selective labeling techniques protein allow us to effectively track function, intracellular dynamics, localization. Despite numerous reports on modifying target with functional chemical probes, unique organic reactions that achieve site-selective integration without compromising native properties remain a significant challenge. In this review, we delve into using synthetic highlighting both computational methodologies chemo- regioselective modifications naturally occurring amino acids, as well proximity-driven protein-selective modifications. We also underline recent traceless affinity strategies involve exchange/cleavage catalyst tethering The rapid development infrastructure methods has made the bioconjugation more accessible, enabling precise predictions structural changes due Hence, discuss bioconjugational approaches, including molecular dynamics artificial intelligence, underscoring their potential applications in enhancing our understanding cellular biology addressing current challenges field.

Язык: Английский

Engineered platelets as targeted protein degraders and application to breast cancer models DOI
Yu Chen,

Samira Pal,

Wen Li

и другие.

Nature Biotechnology, Год журнала: 2024, Номер unknown

Опубликована: Дек. 3, 2024

Язык: Английский

Процитировано

7

Formation of mono- and dual-labelled antibody fragment conjugates via reversible site-selective disulfide modification and proximity induced lysine reactivity DOI Creative Commons

Ioanna A. Thanasi,

Nathalie Bouloc,

Clíona McMahon

и другие.

Chemical Science, Год журнала: 2025, Номер unknown

Опубликована: Янв. 1, 2025

Exploiting quantitative and reversible site-selective disulfide modification as a means for selective lysine functionalisation on clinically relevant antibody fragments.

Язык: Английский

Процитировано

1

Targeted Covalent Modification Strategies for Drugging the Undruggable Targets DOI
Tomonori Tamura,

Masaharu Kawano,

Itaru Hamachi

и другие.

Chemical Reviews, Год журнала: 2025, Номер unknown

Опубликована: Янв. 7, 2025

The term "undruggable" refers to proteins or other biological targets that have been historically challenging target with conventional drugs therapeutic strategies because of their structural, functional, dynamic properties. Drugging such undruggable is essential develop new therapies for diseases where current treatment options are limited nonexistent. Thus, investigating methods achieve drugging an important challenge in medicinal chemistry. Among the numerous methodologies drug discovery, covalent modification has emerged as a transformative strategy. attachment diverse functional molecules provides powerful platform creating highly potent and chemical tools well ability provide valuable information on structures dynamics targets. In this review, we summarize recent examples biomolecules development therapeutics overcome discovery challenges highlight how contribute toward particular, focus use chemistry drugs, identification, screening, artificial modulation post-translational modifications, cancer specific chemotherapies, nucleic acid-based therapeutics.

Язык: Английский

Процитировано

1

Protective effects of Abrus cantoniensis Hance against liver injury through modulation of intestinal microbiota and liver metabolites DOI Creative Commons
Chang Xu, Munwar Ali,

Jingyi Sun

и другие.

Ecotoxicology and Environmental Safety, Год журнала: 2024, Номер 279, С. 116495 - 116495

Опубликована: Май 30, 2024

Abrus cantoniensis Hance (ACH) is an ancient Chinese medicine herb known for its therapeutic effects. This study investigated the potential protective effect of ACH against carbon tetrachloride (CCl

Язык: Английский

Процитировано

6

Recent progress of chemical methods for lysine site-selective modification of peptides and proteins DOI
Jian Li, Jinjin Chen, Qi-Long Hu

и другие.

Chinese Chemical Letters, Год журнала: 2024, Номер unknown, С. 110126 - 110126

Опубликована: Июнь 1, 2024

Язык: Английский

Процитировано

5

N-Acyl-N-Alkyl Sulfonamide Probes for Ligand-Directed Covalent Labeling of GPCRs: The Adenosine A2B Receptor as Case Study DOI
Bert L. H. Beerkens,

Vasiliki Andrianopoulou,

Xuesong Wang

и другие.

ACS Chemical Biology, Год журнала: 2024, Номер 19(7), С. 1554 - 1562

Опубликована: Июнь 26, 2024

Small molecular tool compounds play an essential role in the study of G protein-coupled receptors (GPCRs). However, most often occupy orthosteric binding site, hampering GPCRs upon ligand binding. To overcome this problem, ligand-directed labeling techniques have been developed that leave a reporter group covalently bound to GPCR, while allowing subsequent ligands bind. In work, we applied such strategy adenosine A

Язык: Английский

Процитировано

5

Tying the knot with lysine DOI
Ana Koperniku, Nicholas A. Meanwell

Nature Reviews Chemistry, Год журнала: 2024, Номер 8(4), С. 235 - 237

Опубликована: Март 18, 2024

Язык: Английский

Процитировано

3

Lysine-Targeted Covalent Inhibitors of PI3Kδ Synthesis and Screening by In Situ Interaction Upgradation DOI
Bo Yuan, Yifan Feng, Mengyan Ma

и другие.

Journal of Medicinal Chemistry, Год журнала: 2024, Номер unknown

Опубликована: Ноя. 19, 2024

Targeting the lysine residue of protein kinases to develop covalent inhibitors is an emerging hotspot. Herein, we have reported approach lysine-targeted PI3Kδ by in situ interaction upgradation H-bonding bonding. Several warhead groups were introduced and screened situ, leading bearing aromatic esters with high bioactivity selectivity. Compound A11 phenolic ester was finally optimized show a long duration action SU-DHL-6 cells multiple assays. Docking simulation further mass spectrometry confirmed that bound covalent-bonding interactions Lys779. Furthermore, exhibited potently antitumor efficacy without obvious toxicity Pfeiffer xenograft mouse models. This study identified be much more effective agent vitro vivo as inhibitor, it also provided practical for development inhibitors.

Язык: Английский

Процитировано

3

N-Acyl-N-alkyl/aryl Sulfonamide Chemistry Assisted by Proximity for Modification and Covalent Inhibition of Endogenous Proteins in Living Systems DOI
Tomonori Tamura, Itaru Hamachi

Accounts of Chemical Research, Год журнала: 2024, Номер unknown

Опубликована: Дек. 11, 2024

ConspectusSelective chemical modification of endogenous proteins in living systems with synthetic small molecular probes is a central challenge biology. Such has variety applications important for biological and pharmaceutical research, including protein visualization, functionalization, proteome-wide profiling enzyme activity, irreversible inhibition activity. Traditional chemistry selective cells largely relies on the high nucleophilicity cysteine residues to ensure target-selectivity site-specificity modification. More recently, lysine residues, which are more abundant surfaces, have attracted attention covalent proteins. However, it been difficult efficiently modify ε-amino groups side-chains, mostly (∼99.9%) protonated thus exhibit low at physiological pH. Our group revealed that

Язык: Английский

Процитировано

3

Covalent functionalization of G protein-coupled receptors by small molecular probes DOI Creative Commons
Bert L. H. Beerkens, Adriaan P. IJzerman, Laura H. Heitman

и другие.

RSC Chemical Biology, Год журнала: 2025, Номер unknown

Опубликована: Янв. 1, 2025

In this review, we take a closer look at the most recent small molecular probes that covalently label G protein-coupled receptors.

Язык: Английский

Процитировано

0