From Ocean to Medicine: Pharmaceutical Applications of Metabolites from Marine Bacteria DOI Creative Commons
José Diogo Neves dos Santos, Inês Rosado Vitorino, Fernando Reyes

и другие.

Antibiotics, Год журнала: 2020, Номер 9(8), С. 455 - 455

Опубликована: Июль 28, 2020

Oceans cover seventy percent of the planet’s surface and besides being an immense reservoir biological life, they serve as vital sources for human sustenance, tourism, transport commerce. Yet, it is estimated by National Oceanic Atmospheric Administration (NOAA) that eighty oceans remain unexplored. The untapped resources present in may be fundamental solving several world’s public health crises 21st century, which span from rise antibiotic resistance bacteria, pathogenic fungi parasites, to cancer incidence viral infection outbreaks. In this review, risks well how marine bacterial derived natural products tools fight them will discussed. Moreover, overview made research pipeline novel molecules, identification bioactive crude extracts isolation chemical characterization molecules within framework One Health approach. This review highlights information has been published since 2014, showing current relevance bacteria discovery products.

Язык: Английский

Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation DOI Creative Commons
Susana P. Gaudêncio,

Engin Bayram,

Lada Lukić‐Bilela

и другие.

Marine Drugs, Год журнала: 2023, Номер 21(5), С. 308 - 308

Опубликована: Май 19, 2023

Natural Products (NP) are essential for the discovery of novel drugs and products numerous biotechnological applications. The NP process is expensive time-consuming, having as major hurdles dereplication (early identification known compounds) structure elucidation, particularly determination absolute configuration metabolites with stereogenic centers. This review comprehensively focuses on recent technological instrumental advances, highlighting development methods that alleviate these obstacles, paving way accelerating towards Herein, we emphasize most innovative high-throughput tools advancing bioactivity screening, chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, three-dimensional elucidation.

Язык: Английский

Процитировано

65

The Role of Artificial Intelligence and Machine Learning in Predicting and Combating Antimicrobial Resistance DOI Creative Commons
Hazrat Bilal, Muhammad Nadeem Khan, Sabir Khan

и другие.

Computational and Structural Biotechnology Journal, Год журнала: 2025, Номер 27, С. 423 - 439

Опубликована: Янв. 1, 2025

Antimicrobial resistance (AMR) is a major threat to global public health. The current review synthesizes address the possible role of Artificial Intelligence and Machine Learning (AI/ML) in mitigating AMR. Supervised learning, unsupervised deep reinforcement natural language processing are some main tools used this domain. AI/ML models can use various data sources, such as clinical information, genomic sequences, microbiome insights, epidemiological for predicting AMR outbreaks. Although relatively new fields, numerous case studies offer substantial evidence their successful application outbreaks with greater accuracy. These provide insights into discovery novel antimicrobials, repurposing existing drugs, combination therapy through analysis molecular structures. In addition, AI-based decision support systems real-time guide healthcare professionals improve prescribing antibiotics. also outlines how AI surveillance, analyze trends, enable early outbreak identification. Challenges, ethical considerations, privacy, model biases exist, however, continuous development methodologies enables play significant combating

Язык: Английский

Процитировано

7

Artificial Intelligence in Natural Product Drug Discovery: Current Applications and Future Perspectives DOI Creative Commons

Amit Gangwal,

Antonio Lavecchia

Journal of Medicinal Chemistry, Год журнала: 2025, Номер unknown

Опубликована: Фев. 6, 2025

Drug discovery, a multifaceted process from compound identification to regulatory approval, historically plagued by inefficiencies and time lags due limited data utilization, now faces urgent demands for accelerated lead identification. Innovations in biological computational chemistry have spurred shift trial-and-error methods holistic approaches medicinal chemistry. Computational techniques, particularly artificial intelligence (AI), notably machine learning (ML) deep (DL), revolutionized drug development, enhancing analysis predictive modeling. Natural products (NPs) long served as rich sources of biologically active compounds, with many successful drugs originating them. Advances information science expanded NP-related databases, enabling deeper exploration AI. Integrating AI into NP discovery promises discoveries, leveraging AI's analytical prowess, including generative synthesis. This perspective illuminates current landscape addressing strengths, limitations, future trajectories advance this vital research domain.

Язык: Английский

Процитировано

5

Deep learning and its applications in nuclear magnetic resonance spectroscopy DOI
Yao Luo,

Xiaoxu Zheng,

Mengjie Qiu

и другие.

Progress in Nuclear Magnetic Resonance Spectroscopy, Год журнала: 2025, Номер 146-147, С. 101556 - 101556

Опубликована: Янв. 17, 2025

Язык: Английский

Процитировано

3

Cheminformatics in Natural Product‐based Drug Discovery DOI Creative Commons
Ya Chen, Johannes Kirchmair

Molecular Informatics, Год журнала: 2020, Номер 39(12)

Опубликована: Июль 29, 2020

This review seeks to provide a timely survey of the scope and limitations cheminformatics methods in natural product-based drug discovery. Following an overview data resources chemical, biological structural information on products, we discuss, among other aspects, silico for (i) curation products dereplication, (ii) analysis, visualization, navigation comparison chemical space, (iii) quantification product-likeness, (iv) prediction bioactivities (virtual screening, target prediction), ADME safety profiles (toxicity) (v) products-inspired de novo design (vi) prone cause interference with assays. Among many discussed are rule-based, similarity-based, shape-based, pharmacophore-based network-based approaches, docking machine learning methods.

Язык: Английский

Процитировано

123

Metabolomics and genomics in natural products research: complementary tools for targeting new chemical entities DOI
Lindsay K. Caesar, Rana Montaser, Nancy P. Keller

и другие.

Natural Product Reports, Год журнала: 2021, Номер 38(11), С. 2041 - 2065

Опубликована: Янв. 1, 2021

Here we provide a comprehensive guide for studying natural product biosynthesis using genomics, metabolomics, and their integrated datasets. We emphasize strategies critical outlook on remaining challenges in the field.

Язык: Английский

Процитировано

103

NMR: Unique Strengths That Enhance Modern Metabolomics Research DOI
Arthur S. Edison, Maxwell B. Colonna, Gonçalo J. Gouveia

и другие.

Analytical Chemistry, Год журнала: 2020, Номер 93(1), С. 478 - 499

Опубликована: Ноя. 12, 2020

ADVERTISEMENT RETURN TO ISSUEPREVReviewNEXTNMR: Unique Strengths That Enhance Modern Metabolomics ResearchArthur S. Edison*Arthur EdisonDepartments of Biochemistry & Molecular Biology, Genetics and Institute Bioinformatics, the , Complex Carbohydrate Research Center, University Georgia, 315 Riverbend Road, Athens, Georgia 30605, USA*Email: [email protected]More by Arthur EdisonView Biographyhttp://orcid.org/0000-0002-5686-2350, Maxwell ColonnaMaxwell ColonnaDepartments USAMore ColonnaView Biography, Goncalo J. GouveiaGoncalo GouveiaDepartments GouveiaView Nicole R. HoldermanNicole HoldermanDepartments HoldermanView Michael T. JudgeMichael JudgeGenetics, JudgeView Xunan ShenXunan ShenInstitute ShenView Sicong ZhangSicong ZhangDepartments ZhangView BiographyCite this: Anal. Chem. 2021, 93, 1, 478–499Publication Date (Web):November 12, 2020Publication History Published online12 November 2020Published inissue 12 January 2021https://doi.org/10.1021/acs.analchem.0c04414Copyright © 2020 American Chemical SocietyRIGHTS PERMISSIONSArticle Views2259Altmetric-Citations37LEARN ABOUT THESE METRICSArticle Views are COUNTER-compliant sum full text article downloads since 2008 (both PDF HTML) across all institutions individuals. These metrics regularly updated to reflect usage leading up last few days.Citations number other articles citing this article, calculated Crossref daily. Find more information about citation counts.The Altmetric Attention Score is a quantitative measure attention that research has received online. Clicking on donut icon will load page at altmetric.com with additional details score social media presence for given article. how calculated. Share Add toView InAdd Full Text ReferenceAdd Description ExportRISCitationCitation abstractCitation referencesMore Options onFacebookTwitterWechatLinked InReddit Read OnlinePDF (4 MB) Get e-AlertsSUBJECTS:Cancer,Cells,Metabolism,Metabolomics,Nuclear magnetic resonance spectroscopy e-Alerts

Язык: Английский

Процитировано

93

Machine learning approaches for elucidating the biological effects of natural products DOI
Ruihan Zhang, Xiao‐Li Li, Xing‐Jie Zhang

и другие.

Natural Product Reports, Год журнала: 2020, Номер 38(2), С. 346 - 361

Опубликована: Сен. 1, 2020

This review presents the basic principles, protocols and examples of using machine learning approaches to investigate bioactivity natural products.

Язык: Английский

Процитировано

72

Applications of Virtual Screening in Bioprospecting: Facts, Shifts, and Perspectives to Explore the Chemo-Structural Diversity of Natural Products DOI Creative Commons
Kauȇ Santana da Costa, Lidiane Diniz do Nascimento,

Anderson Lima e Lima

и другие.

Frontiers in Chemistry, Год журнала: 2021, Номер 9

Опубликована: Апрель 29, 2021

Natural products are continually explored in the development of new bioactive compounds with industrial applications, attracting attention scientific research efforts due to their pharmacophore-like structures, pharmacokinetic properties, and unique chemical space. The systematic search for natural sources obtain valuable molecules develop commercial value purposes remains most challenging task bioprospecting. Virtual screening strategies have innovated discovery novel assessing silico large compound libraries, favoring analysis space, pharmacodynamics, thus leading reduction financial efforts, infrastructure, time involved process discovering entities. Herein, we discuss computational approaches methods developed explore chemo-structural diversity products, focusing on main paradigms from sources, placing particular emphasis artificial intelligence, cheminformatics methods, big data analyses.

Язык: Английский

Процитировано

66

The year 2020 in natural product bioinformatics: an overview of the latest tools and databases DOI Creative Commons
Marnix H. Medema

Natural Product Reports, Год журнала: 2021, Номер 38(2), С. 301 - 306

Опубликована: Янв. 1, 2021

This brief article provides an overview of natural product-related bioinformatic tools and databases released or published in the year 2020.

Язык: Английский

Процитировано

58