Antigen Identification for Orphan T Cell Receptors Expressed on Tumor-Infiltrating Lymphocytes DOI Creative Commons
Marvin H. Gee, Arnold Han,

Shane Lofgren

и другие.

Cell, Год журнала: 2017, Номер 172(3), С. 549 - 563.e16

Опубликована: Дек. 21, 2017

Highlights•Development of a human leukocyte antigen library for TCR ligand identification•Single-cell sequencing and phenotyping T cells infiltrating colon cancer•Ligand discovery four tumor-derived cell receptors•Identification shared non-mutated tumor between two patientsSummaryThe immune system can mount responses against tumors; however, the specificities tumor-infiltrating lymphocytes (TILs) are not well understood. We used yeast-display libraries peptide-human (pHLA) to screen antigens "orphan" receptors (TCRs) expressed on TILs from colorectal adenocarcinoma. Four TIL-derived TCRs exhibited strong selection peptides presented in highly diverse pHLA-A∗02:01 library. Three TIL were specific self-antigens, which present separate patient tumors, specificity self-antigen derived U2AF2. These results show that exposed recognition surface MHC-bound accessible contains sufficient structural information enable reconstruction sequences peptide targets pathogenic unknown specificity. This finding underscores surprising their cognate enables facile indentification through unbiased screening.Graphical abstract

Язык: Английский

Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing DOI Creative Commons
Chunhong Zheng, Liangtao Zheng, Jae‐Kwang Yoo

и другие.

Cell, Год журнала: 2017, Номер 169(7), С. 1342 - 1356.e16

Опубликована: Июнь 1, 2017

Язык: Английский

Процитировано

1843

Organoid Modeling of the Tumor Immune Microenvironment DOI Creative Commons
James T. Neal, Xingnan Li, Junjie Zhu

и другие.

Cell, Год журнала: 2018, Номер 175(7), С. 1972 - 1988.e16

Опубликована: Дек. 1, 2018

Язык: Английский

Процитировано

1164

Lineage tracking reveals dynamic relationships of T cells in colorectal cancer DOI
Lei Zhang, Xin Yu, Liangtao Zheng

и другие.

Nature, Год журнала: 2018, Номер 564(7735), С. 268 - 272

Опубликована: Окт. 24, 2018

Язык: Английский

Процитировано

1059

Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma DOI Creative Commons

Hanjie Li,

Anne M. van der Leun, Ido Yofe

и другие.

Cell, Год журнала: 2018, Номер 176(4), С. 775 - 789.e18

Опубликована: Дек. 27, 2018

Язык: Английский

Процитировано

952

Identifying specificity groups in the T cell receptor repertoire DOI

Jacob Glanville,

Huang Huang, Allison Nau

и другие.

Nature, Год журнала: 2017, Номер 547(7661), С. 94 - 98

Опубликована: Июнь 20, 2017

Язык: Английский

Процитировано

934

Clonally expanded CD8 T cells patrol the cerebrospinal fluid in Alzheimer’s disease DOI
David Gate, Naresha Saligrama, Olivia Leventhal

и другие.

Nature, Год журнала: 2020, Номер 577(7790), С. 399 - 404

Опубликована: Янв. 8, 2020

Язык: Английский

Процитировано

711

Human immune system variation DOI
Petter Brodin, Mark M. Davis

Nature reviews. Immunology, Год журнала: 2016, Номер 17(1), С. 21 - 29

Опубликована: Дек. 5, 2016

Язык: Английский

Процитировано

620

Best practices for single-cell analysis across modalities DOI Open Access
Lukas Heumos, Anna C. Schaar, Christopher Lance

и другие.

Nature Reviews Genetics, Год журнала: 2023, Номер 24(8), С. 550 - 572

Опубликована: Март 31, 2023

Язык: Английский

Процитировано

545

Single-cell transcriptomics to explore the immune system in health and disease DOI Open Access
Michael J. T. Stubbington, Orit Rozenblatt–Rosen, Aviv Regev

и другие.

Science, Год журнала: 2017, Номер 358(6359), С. 58 - 63

Опубликована: Окт. 5, 2017

The immune system varies in cell types, states, and locations. complex networks, interactions, responses of cells produce diverse cellular ecosystems composed multiple accompanied by genetic diversity antigen receptors. Within this ecosystem, innate adaptive maintain protect tissue function, integrity, homeostasis upon changes functional demands insults. Characterizing inherent complexity requires studies at single-cell resolution. Recent advances such as massively parallel RNA sequencing sophisticated computational methods are catalyzing a revolution our understanding immunology. Here we provide an overview the state genomics outlook on use techniques to decipher components immunity.

Язык: Английский

Процитировано

509

Single-cell analysis tools for drug discovery and development DOI
James R. Heath, Antoni Ribas, Paul S. Mischel

и другие.

Nature Reviews Drug Discovery, Год журнала: 2015, Номер 15(3), С. 204 - 216

Опубликована: Дек. 16, 2015

Язык: Английский

Процитировано

459