Antigen Identification for Orphan T Cell Receptors Expressed on Tumor-Infiltrating Lymphocytes DOI Creative Commons
Marvin H. Gee, Arnold Han,

Shane Lofgren

et al.

Cell, Journal Year: 2017, Volume and Issue: 172(3), P. 549 - 563.e16

Published: Dec. 21, 2017

Highlights•Development of a human leukocyte antigen library for TCR ligand identification•Single-cell sequencing and phenotyping T cells infiltrating colon cancer•Ligand discovery four tumor-derived cell receptors•Identification shared non-mutated tumor between two patientsSummaryThe immune system can mount responses against tumors; however, the specificities tumor-infiltrating lymphocytes (TILs) are not well understood. We used yeast-display libraries peptide-human (pHLA) to screen antigens "orphan" receptors (TCRs) expressed on TILs from colorectal adenocarcinoma. Four TIL-derived TCRs exhibited strong selection peptides presented in highly diverse pHLA-A∗02:01 library. Three TIL were specific self-antigens, which present separate patient tumors, specificity self-antigen derived U2AF2. These results show that exposed recognition surface MHC-bound accessible contains sufficient structural information enable reconstruction sequences peptide targets pathogenic unknown specificity. This finding underscores surprising their cognate enables facile indentification through unbiased screening.Graphical abstract

Language: Английский

Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing DOI Creative Commons
Chunhong Zheng, Liangtao Zheng, Jae‐Kwang Yoo

et al.

Cell, Journal Year: 2017, Volume and Issue: 169(7), P. 1342 - 1356.e16

Published: June 1, 2017

Language: Английский

Citations

1840

Organoid Modeling of the Tumor Immune Microenvironment DOI Creative Commons
James T. Neal, Xingnan Li, Junjie Zhu

et al.

Cell, Journal Year: 2018, Volume and Issue: 175(7), P. 1972 - 1988.e16

Published: Dec. 1, 2018

Language: Английский

Citations

1159

Lineage tracking reveals dynamic relationships of T cells in colorectal cancer DOI
Lei Zhang, Xin Yu, Liangtao Zheng

et al.

Nature, Journal Year: 2018, Volume and Issue: 564(7735), P. 268 - 272

Published: Oct. 24, 2018

Language: Английский

Citations

1054

Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma DOI Creative Commons

Hanjie Li,

Anne M. van der Leun, Ido Yofe

et al.

Cell, Journal Year: 2018, Volume and Issue: 176(4), P. 775 - 789.e18

Published: Dec. 27, 2018

Language: Английский

Citations

945

Identifying specificity groups in the T cell receptor repertoire DOI

Jacob Glanville,

Huang Huang, Allison Nau

et al.

Nature, Journal Year: 2017, Volume and Issue: 547(7661), P. 94 - 98

Published: June 20, 2017

Language: Английский

Citations

928

Clonally expanded CD8 T cells patrol the cerebrospinal fluid in Alzheimer’s disease DOI
David Gate, Naresha Saligrama, Olivia Leventhal

et al.

Nature, Journal Year: 2020, Volume and Issue: 577(7790), P. 399 - 404

Published: Jan. 8, 2020

Language: Английский

Citations

704

Human immune system variation DOI
Petter Brodin, Mark M. Davis

Nature reviews. Immunology, Journal Year: 2016, Volume and Issue: 17(1), P. 21 - 29

Published: Dec. 5, 2016

Language: Английский

Citations

618

Best practices for single-cell analysis across modalities DOI Open Access
Lukas Heumos, Anna C. Schaar, Christopher Lance

et al.

Nature Reviews Genetics, Journal Year: 2023, Volume and Issue: 24(8), P. 550 - 572

Published: March 31, 2023

Language: Английский

Citations

535

Single-cell transcriptomics to explore the immune system in health and disease DOI Open Access
Michael J. T. Stubbington, Orit Rozenblatt–Rosen, Aviv Regev

et al.

Science, Journal Year: 2017, Volume and Issue: 358(6359), P. 58 - 63

Published: Oct. 5, 2017

The immune system varies in cell types, states, and locations. complex networks, interactions, responses of cells produce diverse cellular ecosystems composed multiple accompanied by genetic diversity antigen receptors. Within this ecosystem, innate adaptive maintain protect tissue function, integrity, homeostasis upon changes functional demands insults. Characterizing inherent complexity requires studies at single-cell resolution. Recent advances such as massively parallel RNA sequencing sophisticated computational methods are catalyzing a revolution our understanding immunology. Here we provide an overview the state genomics outlook on use techniques to decipher components immunity.

Language: Английский

Citations

509

Single-cell analysis tools for drug discovery and development DOI
James R. Heath, Antoni Ribas, Paul S. Mischel

et al.

Nature Reviews Drug Discovery, Journal Year: 2015, Volume and Issue: 15(3), P. 204 - 216

Published: Dec. 16, 2015

Language: Английский

Citations

459