Cell,
Journal Year:
2017,
Volume and Issue:
172(3), P. 549 - 563.e16
Published: Dec. 21, 2017
Highlights•Development
of
a
human
leukocyte
antigen
library
for
TCR
ligand
identification•Single-cell
sequencing
and
phenotyping
T
cells
infiltrating
colon
cancer•Ligand
discovery
four
tumor-derived
cell
receptors•Identification
shared
non-mutated
tumor
between
two
patientsSummaryThe
immune
system
can
mount
responses
against
tumors;
however,
the
specificities
tumor-infiltrating
lymphocytes
(TILs)
are
not
well
understood.
We
used
yeast-display
libraries
peptide-human
(pHLA)
to
screen
antigens
"orphan"
receptors
(TCRs)
expressed
on
TILs
from
colorectal
adenocarcinoma.
Four
TIL-derived
TCRs
exhibited
strong
selection
peptides
presented
in
highly
diverse
pHLA-A∗02:01
library.
Three
TIL
were
specific
self-antigens,
which
present
separate
patient
tumors,
specificity
self-antigen
derived
U2AF2.
These
results
show
that
exposed
recognition
surface
MHC-bound
accessible
contains
sufficient
structural
information
enable
reconstruction
sequences
peptide
targets
pathogenic
unknown
specificity.
This
finding
underscores
surprising
their
cognate
enables
facile
indentification
through
unbiased
screening.Graphical
abstract
Science,
Journal Year:
2017,
Volume and Issue:
358(6359), P. 58 - 63
Published: Oct. 5, 2017
The
immune
system
varies
in
cell
types,
states,
and
locations.
complex
networks,
interactions,
responses
of
cells
produce
diverse
cellular
ecosystems
composed
multiple
accompanied
by
genetic
diversity
antigen
receptors.
Within
this
ecosystem,
innate
adaptive
maintain
protect
tissue
function,
integrity,
homeostasis
upon
changes
functional
demands
insults.
Characterizing
inherent
complexity
requires
studies
at
single-cell
resolution.
Recent
advances
such
as
massively
parallel
RNA
sequencing
sophisticated
computational
methods
are
catalyzing
a
revolution
our
understanding
immunology.
Here
we
provide
an
overview
the
state
genomics
outlook
on
use
techniques
to
decipher
components
immunity.