Limnology and Oceanography Methods,
Год журнала:
2025,
Номер
unknown
Опубликована: Март 1, 2025
ABSTRACT
Accessing
the
metabolic
functioning
of
deep‐sea
animals
in
situ
remains
a
technological
challenge
as
recovery
time
samples
is
incompatible
with
short
lifespan
such
molecules
mRNAs.
Tools
able
to
preserve
RNA
exist,
but
they
are
study
mobile
fauna.
Here,
we
describe
new
sampling
tool,
named
FISH
(fixer
homogenized
substrates),
implemented
on
submersible
and
equipped
number
specific
features
collect
tissue
Connected
suction
pump
submersible,
sampler
incorporates
bowl
which
two
bottles
preservative
reagent
attached,
hose,
support
containing
motor
connected
by
magnetic
coupling
system.
We
used
hydrothermal
shrimp
Rimicaris
exoculata
from
Mid‐Atlantic
Ridge
model
test
suitability
our
tool.
The
was
compared
other
methods,
use
metatranscriptomic
approach
targeting
microbial
communities
associated
cephalothorax
symbionts.
quality,
gene
assignment,
taxonomic
function
diversity
showed
differences
between
on‐board
preservation
tissues.
Of
alternative
methods
tested,
clearly
not
suitable
for
RNA‐based
studies,
while
pressurized
results
closer
sample
quality
obtained
sampling.
has
therefore
demonstrated
be
cost‐effective
reliable
tool
efficiently
recovered
environments.
Current Biology,
Год журнала:
2019,
Номер
29(12), С. 2043 - 2050.e8
Опубликована: Июнь 1, 2019
The
world's
ecosystems
are
characterized
by
an
unequal
distribution
of
resources
[1].
Trade
partnerships
between
organisms
different
species-mutualisms-can
help
individuals
cope
with
such
resource
inequality
[2-4].
allows
to
exchange
commodities
they
can
provide
at
low
cost
for
that
otherwise
impossible
or
more
difficult
access
[5,
6].
However,
as
become
increasingly
patchy
in
time
space,
it
is
unknown
how
alter
their
trading
strategies
[7,
8].
Here,
we
show
a
symbiotic
fungus
mediates
trade
host
root
response
levels
across
its
network.
We
developed
quantum-dot-tracking
technique
quantify
phosphorus-trading
arbuscular
mycorrhizal
fungi
simultaneously
exposed
rich
and
poor
patches.
By
following
fluorescent
nanoparticles
colors
fungal
networks,
determined
where
phosphorus
was
hoarded,
relocated,
transferred
plant
hosts.
found
increasing
exposure
stimulated
trade.
Fungi
responded
high
variation
(1)
the
total
amount
distributed
roots,
(2)
decreasing
allocation
storage,
(3)
differentially
moving
within
network
from
Using
single-particle
tracking
high-resolution
video,
dynamic
movement
may
capitalize
on
value
differences
network,
physically
areas
demand
gain
better
returns.
Such
translocation
inequality.
The ISME Journal,
Год журнала:
2020,
Номер
14(10), С. 2554 - 2567
Опубликована: Июнь 29, 2020
Sponges
are
the
oldest
known
extant
animal-microbe
symbiosis.
These
ubiquitous
benthic
animals
play
an
important
role
in
marine
ecosystems
cycling
of
dissolved
organic
matter
(DOM),
largest
source
on
Earth.
The
conventional
view
DOM
through
microbial
processing
has
been
challenged
by
interaction
between
this
efficient
filter-feeding
host
and
its
diverse
abundant
microbiome.
Here
we
quantify,
for
first
time,
cells
symbionts
sponge
heterotrophy.
We
combined
stable
isotope
probing
nanoscale
secondary
ion
mass
spectrometry
to
compare
different
sources
(glucose,
amino
acids,
algal-produced)
particulate
(POM)
a
high-microbial
abundance
(HMA)
low-microbial
(LMA)
with
single-cell
resolution.
Contrary
common
notion,
found
that
both
choanocyte
(i.e.
filter)
were
active
uptake.
Although
all
assimilated
sponges,
higher
biomass
HMA
corresponded
increased
capacity
process
greater
variety
compounds.
Nevertheless,
situ
feeding
data
demonstrated
was
primary
carbon
LMA
sponge,
accounting
~90%
their
heterotrophic
diets.
Microbes
accounted
majority
(65-87%)
(and
~60%
total
diet)
but
<5%
sponge.
propose
evolutionary
success
sponges
is
due
strategies
exploit
vast
reservoir
ocean.
PeerJ,
Год журнала:
2021,
Номер
9, С. e10911 - e10911
Опубликована: Фев. 25, 2021
Host-microbe
interactions
play
crucial
roles
in
marine
ecosystems.
However,
we
still
have
very
little
understanding
of
the
mechanisms
that
govern
these
relationships,
evolutionary
processes
shape
them,
and
their
ecological
consequences.
The
holobiont
concept
is
a
renewed
paradigm
biology
can
help
to
describe
understand
complex
systems.
It
posits
host
its
associated
microbiota
with
which
it
interacts,
form
holobiont,
be
studied
together
as
coherent
biological
functional
unit
biology,
ecology,
evolution.
Here
discuss
critical
concepts
opportunities
research
identify
key
challenges
field.
We
highlight
potential
economic,
sociological,
environmental
impacts
biological,
evolutionary,
sciences.
Given
connectivity
unexplored
biodiversity
specific
ecosystems,
deeper
such
systems
requires
further
technological
conceptual
advances,
e.g.,
development
controlled
experimental
model
for
holobionts
from
all
major
lineages
modeling
(info)chemical-mediated
between
organisms.
propose
one
significant
challenge
bridge
cross-disciplinary
on
tractable
order
address
questions.
This
first
step
decipher
main
drivers
dynamics
evolution
account
applied
areas,
conservation,
management,
exploitation
ecosystems
resources,
where
practical
solutions
predict
mitigate
impact
human
activities
are
more
important
than
ever.
Annual Review of Microbiology,
Год журнала:
2021,
Номер
75(1), С. 695 - 718
Опубликована: Авг. 5, 2021
Possibly
the
last
discovery
of
a
previously
unknown
major
ecosystem
on
Earth
was
made
just
over
half
century
ago,
when
researchers
found
teaming
communities
animals
flourishing
two
and
kilometers
below
ocean
surface
at
hydrothermal
vents.
We
now
know
that
these
highly
productive
ecosystems
are
based
nutritional
symbioses
between
chemosynthetic
bacteria
eukaryotes
chemosymbioses
ubiquitous
in
both
deep-sea
shallow-water
environments.
The
symbionts
primary
producers
gain
energy
from
oxidation
reduced
compounds,
such
as
sulfide
methane,
to
fix
carbon
dioxide
or
methane
into
biomass
feed
their
hosts.
This
review
outlines
how
symbiotic
partners
have
adapted
living
together.
first
focus
phylogenetic
metabolic
diversity
then
highlight
selected
research
directions
could
advance
our
understanding
processes
shaped
evolutionary
ecological
success
associations.
Abstract
Marine
sponges
(phylum
Porifera)
form
symbioses
with
diverse
microbial
communities
that
can
be
transmitted
between
generations
through
their
developmental
stages.
Here,
we
integrate
embryology
and
microbiology
to
review
how
symbiotic
microorganisms
are
in
this
early-diverging
lineage.
We
describe
vertical
transmission
is
widespread
but
not
universal,
microbes
vertically
during
a
select
window,
properties
of
the
microbiome
depends
on
whether
species
high
or
low
abundance
sponge.
Reproduction,
development,
symbiosis
thus
deeply
rooted,
why
these
partnerships
remains
central
elusive
tenet
symbioses.
Nature Communications,
Год журнала:
2022,
Номер
13(1)
Опубликована: Фев. 8, 2022
Abstract
The
Central
Arctic
Ocean
is
one
of
the
most
oligotrophic
oceans
on
Earth
because
its
sea-ice
cover
and
short
productive
season.
Nonetheless,
across
peaks
extinct
volcanic
seamounts
Langseth
Ridge
(87°N,
61°E),
we
observe
a
surprisingly
dense
benthic
biomass.
Bacteriosponges
are
abundant
fauna
within
this
community,
with
mass
460
g
C
m
−2
an
estimated
carbon
demand
around
110
yr
−1
,
despite
export
fluxes
from
regional
primary
productivity
only
sufficient
to
provide
<1%
required
carbon.
Observed
sponge
distribution,
bulk
compound-specific
isotope
data
fatty
acids
suggest
that
microbiome
taps
into
refractory
dissolved
particulate
organic
matter,
including
remnants
seep
community.
metabolic
profile
bacteriosponge
expressed
genes
indicate
autotrophic
symbionts
contribute
significantly
assimilation.
We
hotspot
ecosystem
unique
associated
biota,
once
fueled
by
degassing
mounts.
Applied Sciences,
Год журнала:
2022,
Номер
12(3), С. 1400 - 1400
Опубликована: Янв. 28, 2022
Bioactive
compounds
extracted
from
marine
organisms
showed
several
biological
activities.
The
present
study
is
an
extension
of
our
earlier
studies
where
we
assessed
the
antiproliferative
and
pro-apoptotic
activities
ethanol,
methylene
chloride,
ethyl
acetate,
acetone,
chloroform
crude
extracts
sponges:
Negombata
magnifica
(NmE)
Callyspongia
siphonella
(CsE)
against
cancer
cells.
Herein,
are
extending
previous
findings
on
both
sponge
species
depending
alternative
methanol
extraction
method
with
more
advanced
molecular
biochemical
insights
as
additional
proof
for
anticancer
antimicrobial
activity
N.
C.
siphonella.
Therefore,
specimens
were
collected
during
winter
2020
Dahab
region
at
Gulf
Aqaba.
Each
was
macerated
to
obtain
extracts;
NmE
CsE.
GC–MS
analysis
presented
a
total
117
chemical
compounds;
37
bioactive,
11
represented
previously
constituents
natural
organism,
69
had
no
dose-dependently
inhibited
growth
HepG2,
MCF-7,
Caco-2
carcinoma
cell
lines
compared
CsE,
which
unfortunately
has
same
found
induce
G0/G1
cycle
arrest
in
HepG2
cells
its
inhibition
CDK6,
Cyclins
D1,
E1
also
activated
ROS
production
induced
apoptosis
via
increase
protein
Bax,
caspase-3,
cleavage
PARP,
decrease
anti-apoptotic
BCL2.
Unlike
potential,
CsE
exhibited
clear
superior
results
agent
wider
range
six
microbial
strains,
whereas
positive
antibacterial
only
two
strains.
Sedimentology,
Год журнала:
2019,
Номер
66(6), С. 2318 - 2353
Опубликована: Фев. 26, 2019
Abstract
Oil
seeps
from
the
southern
Gulf
of
Mexico
can
be
regarded
as
natural
laboratories
where
effect
crude
oil
seepage
on
chemosynthesis‐based
communities
and
carbonate
precipitation
studied.
During
R/V
Meteor
cruise
114
seep
sites
UNAM
(
Universidad
Nacional
Autónoma
de
México
)
Ridge,
Mictlan
Knoll
Tsanyao
Yang
(Bay
Campeche,
Mexico)
were
investigated
sampled
for
authigenic
deposits
containing
large
amounts
liquid
solid
asphalt.
The
δ
13
C
values
individual
phases
including:
(i)
microcrystalline
matrix
aragonite
calcite;
(ii)
grey,
cryptocrystalline
to
aragonite;
(iii)
clear,
fibrous
cement,
are
between
−30‰
−20‰,
agreeing
with
primary
carbon
source.
Raman
spectra
reveal
that
residual
heavy
oils
all
immature
most
likely
originate
same
reservoir.
Geochemical
batch
modelling
using
software
code
PHREEQC
demonstrates
how
sulphate‐driven
oxidation
oil‐derived
low‐molecular
high‐molecular
weight
hydrocarbons
affects
saturation
state,
shows
state
in
hydrocarbon
compounds
rates
control
at
seeps.
Phase‐specific
trace
rare
earth
element
contents
calcite,
grey
clear
determined,
revealing
enrichment
light
elements
aragonite.
By
comparing
patterns
carbonates
those
associated
oils,
it
becomes
apparent
constitute
an
additional
source
metals
sedimentary
pore
waters.
This
work
not
only
microbial
degradation
may
result
minerals,
also
elucidates
metal
inventories
archive
diagnostic
elemental
patterns,
which
assigned
presence
interstitial