Defining Dysbiosis for a Cluster of Chronic Diseases DOI Creative Commons
Lamont Wilkins, Manoj Monga, Aaron W. Miller

и другие.

Scientific Reports, Год журнала: 2019, Номер 9(1)

Опубликована: Сен. 9, 2019

Abstract The prevalence of many chronic diseases has increased over the last decades. It been postulated that dysbiosis driven by environmental factors such as antibiotic use is shifting microbiome in ways increase inflammation and onset disease. Dysbiosis can be defined through loss or gain bacteria either promote health disease, respectively. Here we multiple independent datasets to determine nature for a cluster includes urinary stone disease (USD), obesity, diabetes, cardiovascular kidney which often exist co-morbidities. For all states, individuals exhibited statistically significant association with antibiotics year compared healthy counterparts. There was also between gut microbiota composition. Furthermore, each state associated microbial diversity gut. Three genera, Bacteroides, Prevotella , Ruminococcus were most common dysbiotic taxa terms being enriched depleted populations part operational taxonomic units (OTUs) within these genera. Results cross-sectional analysis suggest antibiotic-driven may risk However, longitudinal studies are needed confirm causative effect risk.

Язык: Английский

Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing DOI Creative Commons

Isabel Abellan-Schneyder,

Monica Steffi Matchado, Sandra Reitmeier

и другие.

mSphere, Год журнала: 2021, Номер 6(1)

Опубликована: Фев. 24, 2021

In 16S rRNA gene sequencing, certain bacterial genera were found to be underrepresented or even missing in taxonomic profiles when using unsuitable primer combinations, outdated reference databases, inadequate pipeline settings. Concerning the last, quality thresholds as well bioinformatic settings (i.e., clustering approach, analysis pipeline, and specific adjustments such truncation) are responsible for a number of observed differences between studies.

Язык: Английский

Процитировано

286

Gut microbiota in colorectal cancer development and therapy DOI
Chi Chun Wong, Jun Yu

Nature Reviews Clinical Oncology, Год журнала: 2023, Номер 20(7), С. 429 - 452

Опубликована: Май 11, 2023

Язык: Английский

Процитировано

286

Microbiome-based therapeutics DOI

Matthew T. Sorbara,

Eric G. Pamer

Nature Reviews Microbiology, Год журнала: 2022, Номер 20(6), С. 365 - 380

Опубликована: Янв. 6, 2022

Язык: Английский

Процитировано

285

Blood metabolome predicts gut microbiome α-diversity in humans DOI
Tomasz Wilmanski, Noa Rappaport, John C. Earls

и другие.

Nature Biotechnology, Год журнала: 2019, Номер 37(10), С. 1217 - 1228

Опубликована: Сен. 2, 2019

Язык: Английский

Процитировано

267

Defining Dysbiosis for a Cluster of Chronic Diseases DOI Creative Commons
Lamont Wilkins, Manoj Monga, Aaron W. Miller

и другие.

Scientific Reports, Год журнала: 2019, Номер 9(1)

Опубликована: Сен. 9, 2019

Abstract The prevalence of many chronic diseases has increased over the last decades. It been postulated that dysbiosis driven by environmental factors such as antibiotic use is shifting microbiome in ways increase inflammation and onset disease. Dysbiosis can be defined through loss or gain bacteria either promote health disease, respectively. Here we multiple independent datasets to determine nature for a cluster includes urinary stone disease (USD), obesity, diabetes, cardiovascular kidney which often exist co-morbidities. For all states, individuals exhibited statistically significant association with antibiotics year compared healthy counterparts. There was also between gut microbiota composition. Furthermore, each state associated microbial diversity gut. Three genera, Bacteroides, Prevotella , Ruminococcus were most common dysbiotic taxa terms being enriched depleted populations part operational taxonomic units (OTUs) within these genera. Results cross-sectional analysis suggest antibiotic-driven may risk However, longitudinal studies are needed confirm causative effect risk.

Язык: Английский

Процитировано

267