Domesticated
animals
experienced
profound
changes
in
diet,
environment,
and
social
interactions
that
likely
shaped
their
gut
microbiota
were
potentially
analogous
to
ecological
by
humans
during
industrialization.
Comparing
the
of
wild
domesticated
mammals
plus
chimpanzees
humans,
we
found
a
strong
signal
domestication
overall
microbial
community
composition
similar
with
Reciprocal
diet
switches
within
mouse
canid
dyads
demonstrated
critical
role
shaping
microbiota.
Notably,
succeeded
recovering
wild-like
mice
through
experimental
colonization.
Although
fundamentally
different
processes,
conclude
industrialization
have
impacted
related
ways,
shared
change.
Our
findings
highlight
utility,
limitations,
animal
models
for
human
research
importance
studying
non-industrialized
interrogating
signals
host-microbial
coevolution.Living
inside
our
gastrointestinal
tracts
is
large
diverse
bacteria
called
plays
an
active
basic
body
processes
like
metabolism
immunity.
Much
current
understanding
has
come
from
laboratory
mice,
which
very
living
wild.
However,
it
was
unclear
whether
this
difference
microbes
due
domestication,
if
could
also
be
seen
other
domesticated-wild
pairs,
pigs
boars
or
dogs
wolves.
A
few
existing
studies
compared
two
species
pair.
But,
isolated
pairs
cannot
distinguish
factors
are
responsible
altering
animals.
To
overcome
barrier,
Reese
et
al.
sequenced
DNA
taken
fecal
samples
18
mammals.
The
results
showed
while
sets
guts,
leaving
changed
these
ways.
explore
what
causes
patterns,
swapped
diets
pairs:
They
change
shifted
more
counterparts,
vice
versa.
This
suggests
altered
eating
habits
helped
drive
had
on
find
out
differences
occur
people
environments.
communities
individuals
industrialized
populations
common
those
than
did
populations.
effects
microbiota,
kinds
environmental
economy
health,
central
play
biology
help
improve
well-being.
Given
parallels
between
industrialization,
knowledge
gained
shed
light
In
future,
insights
identify
new
ways
alter
health.
International Journal of Molecular Sciences,
Год журнала:
2020,
Номер
21(17), С. 6356 - 6356
Опубликована: Сен. 2, 2020
Short-chain
fatty
acids
(SCFAs),
particularly
acetate,
propionate
and
butyrate,
are
mainly
produced
by
anaerobic
fermentation
of
gut
microbes.
SCFAs
play
an
important
role
in
regulating
energy
metabolism
supply,
as
well
maintaining
the
homeostasis
intestinal
environment.
In
recent
years,
many
studies
have
shown
that
demonstrate
physiologically
beneficial
effects,
signalling
pathways
related
to
SCFA
production,
absorption,
metabolism,
effects
been
discovered.
Two
major
concerning
SCFAs,
G-protein-coupled
receptors
(GPRCs)
histone
deacetylases
(HDACs),
recognized.
this
review,
we
summarize
advances
biological
properties
inflammation
glucose
lipid
metabolism.
Abstract
The
Christensenellaceae
,
a
recently
described
family
in
the
phylum
Firmicutes
is
emerging
as
an
important
player
human
health.
relative
abundance
of
gut
inversely
related
to
host
body
mass
index
(BMI)
different
populations
and
multiple
studies,
making
its
relationship
with
BMI
most
robust
reproducible
link
between
microbial
ecology
metabolic
disease
reported
date.
also
healthy
status
number
other
contexts,
including
obesity
inflammatory
bowel
disease.
In
addition,
highly
heritable
across
populations,
although
specific
genes
underlying
heritability
have
so
far
been
elusive.
Further
research
into
metabolism
these
bacteria
should
reveal
mechanistic
underpinnings
their
host-health
associations
enable
development
therapeutics.
In
this
comprehensive
survey
of
microbiomes
>900
species,
including
315
mammals
and
491
birds,
we
find
a
striking
convergence
the
birds
animals
that
fly.
nonflying
mammals,
diet
short-term
evolutionary
relatedness
drive
microbiome,
many
microbial
species
are
specific
to
particular
kind
mammal,
but
flying
break
pattern
with
microbes
shared
across
different
little
correlation
either
or
hosts.
This
finding
suggests
adaptation
flight
breaks
long-held
relationships
between
hosts
their
microbes.
Journal of Animal Ecology,
Год журнала:
2020,
Номер
89(7), С. 1549 - 1558
Опубликована: Апрель 5, 2020
Abstract
The
host‐associated
core
microbiome
was
originally
coined
to
refer
common
groups
of
microbes
or
genes
that
were
likely
be
particularly
important
for
host
biological
function.
However,
the
term
has
evolved
encompass
variable
definitions
across
studies,
often
identifying
key
with
respect
their
spatial
distribution,
temporal
stability
ecological
influence,
as
well
contribution
function
and
fitness.
A
major
barrier
reaching
a
consensus
over
how
define
its
relevance
biological,
evolutionary
theory
is
lack
precise
terminology
associated
definitions,
persistent
association
Common,
microbiomes
can
together
generate
insights
into
processes
act
independently
function,
while
functional
host‐adapted
cores
distinguish
between
facultative
near‐obligate
symbionts
differ
in
effects
on
This
commentary
summarizes
five
broad
have
been
applied
literature,
highlighting
strengths
limitations
advancing
our
understanding
host–microbe
systems,
noting
where
they
are
overlap,
discussing
potential
No
one
definition
capture
range
population.
Applied
together,
reveal
different
layers
microbial
organization
from
which
we
begin
understand
govern
interactions.
Cell Host & Microbe,
Год журнала:
2020,
Номер
28(1), С. 12 - 22
Опубликована: Июль 1, 2020
Mammalian
gut
microbiomes
profoundly
influence
host
fitness,
but
the
processes
that
drive
evolution
of
host-microbiome
systems
are
poorly
understood.
Recent
studies
suggest
mammals
and
their
individual
symbionts
can
have
parallel
evolutionary
histories,
as
represented
by
congruent
phylogenies.
These
"co-phylogenetic"
patterns
signatures
ancient
co-speciation
events
illustrate
cohesiveness
mammalian
host-gut
microbiome
entity
over
times.
Theory
predicts
between
could
result
from
co-evolution.
However,
there
is
only
limited
evidence
such
Here,
we
propose
a
model
explains
cophylogenetic
without
relying
on
Specifically,
bacteria
likely
to
diverge
in
recapitulating
phylogeny
when
hosts
undergo
allopatric
speciation,
limiting
inter-host
bacterial
dispersal
genomic
recombination.
We
provide
empirically
grounded
series
observational
experimental
approaches
test
its
validity.
Our
understanding
of
the
gut
microbiota
animals
is
largely
based
on
studies
mammals.
To
better
understand
evolutionary
basis
symbiotic
relationships
between
animal
hosts
and
indigenous
microbes,
it
necessary
to
investigate
non-mammalian
vertebrate
species.
In
particular,
fish
have
highest
species
diversity
among
groups
vertebrates,
with
approximately
33,000
this
study,
we
comprehensively
characterized
bacterial
communities
in
fish.
Animals
in
the
wild
are
able
to
subsist
on
pathogen-infected
and
poisonous
food
show
immunity
various
diseases.
These
may
be
due
their
microbiota,
yet
we
have
a
poor
understanding
of
animal
microbial
diversity
function.
We
used
metagenomics
analyze
gut
microbiota
more
than
180
species
wild,
covering
diverse
classes,
feeding
behaviors,
geographies,
traits.
Using
de
novo
metagenome
assembly,
constructed
functionally
annotated
database
5000
genomes,
comprising
1209
bacterial
which
75%
unknown.
The
composition,
diversity,
functional
content
exhibit
associations
with
taxonomy,
diet,
activity,
social
structure,
life
span.
identify
animals
as
largely
untapped
resource
for
discovery
therapeutics
biotechnology
applications.
Science,
Год журнала:
2022,
Номер
377(6612), С. 1328 - 1332
Опубликована: Сен. 15, 2022
The
gut
microbiomes
of
human
populations
worldwide
have
many
core
microbial
species
in
common.
However,
within
a
species,
some
strains
can
show
remarkable
population
specificity.
question
is
whether
such
specificity
arises
from
shared
evolutionary
history
(codiversification)
between
humans
and
their
microbes.
To
test
for
codiversification
host
microbiota,
we
analyzed
paired
metagenomes
genomes
1225
individuals
Europe,
Asia,
Africa,
including
mothers
children.
Between
countries,
parallel
was
evident
Moreover,
displaying
the
strongest
independently
evolved
traits
characteristic
dependency,
reduced
oxygen
temperature
sensitivity.
These
findings
all
point
to
importance
understanding
potential
role
population-specific
microbiome-mediated
disease
phenotypes.