The size and diversity of microbes determine carbon use efficiency in soil DOI
Chansotheary Dang, Ember M. Morrissey

Environmental Microbiology, Год журнала: 2024, Номер 26(5)

Опубликована: Май 1, 2024

Abstract Soil is home to a multitude of microorganisms from all three domains life. These organisms and their interactions are crucial in driving the cycling soil carbon. One key indicator this process Microbial Carbon Use Efficiency (CUE), which shows how microbes influence carbon storage through biomass production. Although CUE varies among different microorganisms, there have been few studies that directly examine biotic factors CUE. such factor could be body size, can impact microbial growth rates soil, thereby influencing Despite this, evidence demonstrating direct causal connection between biodiversity still scarce. To address these knowledge gaps, we conducted an experiment where manipulated size size‐selective filtering. Our findings show manipulating structure community reduce by approximately 65%. When restricted maximum community, observed reduction bacterial diversity functional potential, turn lowered community's Interestingly, when included large micro‐eukarya it shifted cycling, increasing 50% nitrogen ratio about 25%. metrics were able explain 36%–50% variation This highlights importance traits, trophic mediating cycling.

Язык: Английский

Distinct patterns of soil bacterial and fungal community assemblages in subtropical forest ecosystems under warming DOI
Shu‐Yi‐Dan Zhou, Zhiyang Lie, Xujun Liu

и другие.

Global Change Biology, Год журнала: 2022, Номер 29(6), С. 1501 - 1513

Опубликована: Ноя. 30, 2022

Climate change globally affects soil microbial community assembly across ecosystems. However, little is known about the impact of warming on structure communities or underlying mechanisms that shape composition in subtropical forest To address this gap, we utilized natural variation temperature via an altitudinal gradient to simulate ecosystem warming. After 6 years, co-occurrence network complexity increased with warming, and changes their taxonomic were asynchronous, likely due contrasting processes. We found while stochastic processes drivers bacterial composition, led a shift from deterministic dry season. Structural equation modelling highlighted water content positively influenced during season negatively wet These results facilitate our understanding response climate may improve predictions function microbes forests.

Язык: Английский

Процитировано

49
Distinct assembly mechanisms of microbial sub-communities with different rarity along the Nu River DOI
Song Zhang,

Kexin Li,

Jinming Hu

и другие.

Journal of Soils and Sediments, Год журнала: 2022, Номер 22(5), С. 1530 - 1545

Опубликована: Фев. 14, 2022

Язык: Английский

Процитировано

45
Long-term rice-crayfish-turtle co-culture maintains high crop yields by improving soil health and increasing soil microbial community stability DOI Creative Commons

Peng Li,

Guogan Wu,

Yujie Li

и другие.

Geoderma, Год журнала: 2022, Номер 413, С. 115745 - 115745

Опубликована: Фев. 10, 2022

Crop and aquatic animal co-culture systems have been used for over 1200 years can very efficiently utilize nutrients materials available in agroecology settings. These are sustainable forms of agriculture, extensively practiced worldwide. Microorganisms play critical roles promoting ecosystem nutrient transformations material circulations. However, the long-term effects this farming system on soil health microbial community stability, addition to their relationships with rice yields, remain unclear. Here, 7- 12-year experiments rice-crayfish-turtle (RCT) were conducted compared against monoculture (RM) a suburb Shanghai, China. Increased RCT led higher contents organic carbon (SOC), total nitrogen (TN), (Avail_N), but less phosphorus (TP) when same layers RM treatment. Thus, generally had positive physiochemical properties across all layers. qPCR analyses indicated that abundance ratio fungi bacteria (F:B) soils than soils, suggesting an improvement metabolic efficiency sustainability these agroecosystems. High-throughput sequencing demonstrated much diversity. Network analysis revealed more abundant network modules larger proportion negative correlations 7-year networks. Overall, compositional promoted increased stability. Stochastic processes dominated bacterial fungal assembly, while random distributions evident networks communities. interactions between amplicon sequence variants (ASVs) equivalent structures structure Structural equation models (SEM) indirect yields by influencing or Altogether, promotion suitable environments communities, which could contribute cycling further increase crop production yields. results provide new insights into co-associations shifts fertility quality diversity production, thereby helping inform ecological systems.

Язык: Английский

Процитировано

44
Long-term application of nitrogen and phosphorus fertilizers changes the process of community construction by affecting keystone species of crop rhizosphere microorganisms DOI
Chunxiao Wu,

Benshuai Yan,

Furong Wei

и другие.

The Science of The Total Environment, Год журнала: 2023, Номер 897, С. 165239 - 165239

Опубликована: Июнь 30, 2023

Язык: Английский

Процитировано

35
Integrating pH into the metabolic theory of ecology to predict bacterial diversity in soil DOI Creative Commons
Lu Luan, Yuji Jiang, Francisco Dini‐Andreote

и другие.

Proceedings of the National Academy of Sciences, Год журнала: 2023, Номер 120(3)

Опубликована: Янв. 10, 2023

Microorganisms play essential roles in soil ecosystem functioning and maintenance, but methods are currently lacking for quantitative assessments of the mechanisms underlying microbial diversity patterns observed across disparate systems scales. Here we established a model to incorporate pH into metabolic theory capture explain some unexplained variation relationship between temperature bacterial diversity. We then tested validated our newly developed models multiple scales ecological organization. At species level, modeled diversification rate bacterium Pseudomonas fluorescens evolving under laboratory media gradients varying pH. community communities paddy soils continental scale, which included natural temperature. Last, further extended at global scale by integrating meta-analysis comprising 870 collected worldwide from wide range ecosystems. Our results were robust consistently predicting distributional gradients—with explaining 7 66% diversity, depending on system complexity. Together, study represents nexus point integration with potential be used distinct spatiotemporal By mechanistically representing theory, enhances capacity predict current or future climate change scenarios.

Язык: Английский

Процитировано

31
Moso bamboo invasion changes the assembly process and interactive relationship of soil microbial communities in a subtropical broadleaf forest DOI
Caixia Liu,

Chunying Zheng,

Liang Wang

и другие.

Forest Ecology and Management, Год журнала: 2023, Номер 536, С. 120901 - 120901

Опубликована: Март 20, 2023

Язык: Английский

Процитировано

26
Heavy metal contamination collapses trophic interactions in the soil microbial food web via bottom-up regulation DOI

Xuehua Wang,

Zhongmin Dai, Jiahui Lin

и другие.

Soil Biology and Biochemistry, Год журнала: 2023, Номер 184, С. 109058 - 109058

Опубликована: Июнь 1, 2023

Язык: Английский

Процитировано

26
Ecosystem type drives soil eukaryotic diversity and composition in Europe DOI Creative Commons
Julia Köninger, Cristiano Ballabio, Panos Panagos

и другие.

Global Change Biology, Год журнала: 2023, Номер 29(19), С. 5706 - 5719

Опубликована: Июль 14, 2023

Soil eukaryotes play a crucial role in maintaining ecosystem functions and services, yet the factors driving their diversity distribution remain poorly understood. While many studies focus on some eukaryotic groups (mostly fungi), they are limited spatial scale. Here, we analyzed an unprecedented amount of observational data soil eukaryomes at continental scale (787 sites across Europe) to gain further insights into impact wide range environmental conditions (climatic edaphic) community composition structure. We found that fungi, protists, rotifers, tardigrades, nematodes, arthropods, annelids was predominantly shaped by type (annual permanent croplands, managed unmanaged grasslands, coniferous broadleaved woodlands), higher observed croplands than less intensively systems, such as woodlands. Also more specialized eukaryotes, while between homogeneous compared other ecosystems. The high proportion overlapping taxa ecosystems also indicates DNA has accumulated from previous land uses, hence mimicking transformations occurring Europe last decades. This strong ecosystem-type influence linked properties, particularly, pH richness annelids, plant-available phosphorus drove nematodes. Furthermore, organic carbon total nitrogen ratio crucially explained possibly decades agricultural inputs. Our results highlighted importance long-term variables rather measured time sampling shaping communities, which reinforces need include those addition future monitoring programs conservation efforts.

Язык: Английский

Процитировано

26
Distinct distribution patterns and functional potentials of rare and abundant microorganisms between plastisphere and soils DOI
Yongbin Li, Wenlong Gao, Caixia Wang

и другие.

The Science of The Total Environment, Год журнала: 2023, Номер 873, С. 162413 - 162413

Опубликована: Фев. 24, 2023

Язык: Английский

Процитировано

23
Differences in soil microbial community structure and assembly processes under warming and cooling conditions in an alpine forest ecosystem DOI
Fangwei Fu, Yueyao Li, Bo Zhang

и другие.

The Science of The Total Environment, Год журнала: 2023, Номер 907, С. 167809 - 167809

Опубликована: Окт. 18, 2023

Язык: Английский

Процитировано

23