Protein recruitment to dynamic DNA-RNA host condensates DOI Creative Commons
Mahdi Dizani, Daniela Sorrentino, Siddharth Agarwal

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Июнь 4, 2024

Abstract We describe the design and characterization of artificial nucleic acid condensates that are engineered to recruit locally concentrate proteins interest in vitro . These emerge from programmed interactions nanostructured motifs assembling three DNA strands one RNA strand can include an aptamer domain for recruitment a target protein. Because designed form regardless presence protein, they function as “host” compartments. As model protein we consider streptavidin (SA) due its widespread use binding assays, thus host presented here could find immediate physical separation variety biotin-tagged components. In addition demonstrating recruitment, two approaches control onset condensation recruitment. The first approach uses UV irradiation, stimulus bypasses need exchanging molecular inputs is particularly convenient emulsion droplets. second transcription, ubiquitous biochemical reaction central development next generation living materials. finally show combination transcription degradation leads autonomous dissipative system which occur transiently, condensate size well timescale transient be controlled by level degrading enzyme. For Table Contents Only

Язык: Английский

Homeostatic artificial cells enable self-protection in prototissue spheroids DOI Creative Commons

Joshua Krehan,

Chuen-Ru Li,

Marcos K. Masukawa

и другие.

Chem, Год журнала: 2025, Номер unknown, С. 102409 - 102409

Опубликована: Фев. 1, 2025

The bigger pictureLiving cells form tissues with specialized functions that maintain homeostasis through feedback-regulated operations. In tissues, cellular communication and collective behavior are crucial for coordinating tasks ensuring overall functionality. Developing artificial (ACs) can be organized into prototissues to mimic these behaviors is a significant advancement toward creating functional AC systems. These systems essential understanding how design networks behaviors, deciphering life's fundamental principles, advancing biomedical applications. Here, we create AC-based prototissue spheroids stabilize their microenvironment against external pH threats using mechanism encoded within individual ACs. Like living communicate chemically collectively resist environmental challenges, paving the way more advanced in future.Highlights•Microfluidic production of reversible permeability•Homeostatic ACs modulate internal via chemo-structural feedback•Prototissues states threats•Inter-AC mixed counteracts threatsSummaryPrototissues made from aim replicate such as communication, behavior, homeostasis. Despite progress developing diverse types, building achieving effective well remain challenging. We introduce an intrinsic homeostatic control stable protect cargo fluctuations. contain pH-modulating enzymes pH-sensitive membrane, allowing self-regulation feedback. They adjust by importing substrates specific range self-regulate substrate influx. This enables them local pH, manage release, facilitate interactive spheroids. Our findings demonstrate potential synthetic tissue mimics, replicating protective communicative engineering applications.Graphical abstract

Язык: Английский

Процитировано

0

Protein Recruitment to Dynamic DNA-RNA Host Condensates DOI
Mahdi Dizani, Daniela Sorrentino, Siddharth Agarwal

и другие.

Journal of the American Chemical Society, Год журнала: 2024, Номер 146(43), С. 29344 - 29354

Опубликована: Окт. 17, 2024

We describe the design and characterization of artificial nucleic acid condensates that are engineered to recruit locally concentrate proteins interest in vitro. These emerge from programmed interactions nanostructured motifs assembling three DNA strands one RNA strand can include an aptamer domain for recruitment a target protein. Because designed form regardless presence protein, they function as "host" compartments. As model we consider Streptavidin (SA) due its widespread use binding assays. In addition demonstrating protein recruitment, two approaches control onset condensation recruitment. The first approach uses UV irradiation, physical stimulus bypasses need exchanging molecular inputs is particularly convenient emulsion droplets. second transcription, ubiquitous biochemical reaction central development next generation living materials. then show combination transcription degradation leads autonomous dissipative system which host occur transiently condensate size well time scale transition be controlled by level RNA-degrading enzyme. conclude biotinylated beads recruited SA-host condensates, may therefore find immediate separation variety biotin-tagged components.

Язык: Английский

Процитировано

2

Coacervate Droplets as Biomimetic Models for Designing Cell‐Like Microreactors DOI Creative Commons
Tsvetomir Ivanov, Thao P. Doan‐Nguyen,

Mohammed A. Belahouane

и другие.

Macromolecular Rapid Communications, Год журнала: 2024, Номер unknown

Опубликована: Ноя. 26, 2024

Abstract Coacervates are versatile compartments formed by liquid–liquid phase separation. Their dynamic behavior and molecularly crowded microenvironment make them ideal materials for creating cell‐like systems such as synthetic cells microreactors. Recently, combinations of natural molecules have been exploited via simple or complex coacervation to create that can be used build hierarchical chemical with life‐like properties. This review highlights recent advances in the design coacervate their application biomimetic reactors cell mimicking systems. It first explores variety influence structure on controlled behavior. Then, applications coacervates reviewed, focusing how they microreactors through ability sequester provide a distinct regulatory reactions aqueous media.

Язык: Английский

Процитировано

2

Coacervation in systems chemistry DOI Creative Commons
Lorraine Leon, Guillermo Monreal Santiago, Evan Spruijt

и другие.

Communications Chemistry, Год журнала: 2024, Номер 7(1)

Опубликована: Ноя. 22, 2024

Communications Chemistry is delighted to introduce a Collection of articles that combine coacervation with systems chemistry. Here, the Guest Editors importance research at interface between these two topics and highlight current challenges in this area.

Язык: Английский

Процитировано

1

Protein recruitment to dynamic DNA-RNA host condensates DOI Creative Commons
Mahdi Dizani, Daniela Sorrentino, Siddharth Agarwal

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Июнь 4, 2024

Abstract We describe the design and characterization of artificial nucleic acid condensates that are engineered to recruit locally concentrate proteins interest in vitro . These emerge from programmed interactions nanostructured motifs assembling three DNA strands one RNA strand can include an aptamer domain for recruitment a target protein. Because designed form regardless presence protein, they function as “host” compartments. As model protein we consider streptavidin (SA) due its widespread use binding assays, thus host presented here could find immediate physical separation variety biotin-tagged components. In addition demonstrating recruitment, two approaches control onset condensation recruitment. The first approach uses UV irradiation, stimulus bypasses need exchanging molecular inputs is particularly convenient emulsion droplets. second transcription, ubiquitous biochemical reaction central development next generation living materials. finally show combination transcription degradation leads autonomous dissipative system which occur transiently, condensate size well timescale transient be controlled by level degrading enzyme. For Table Contents Only

Язык: Английский

Процитировано

0