Journal of Biomolecular Structure and Dynamics,
Год журнала:
2023,
Номер
42(10), С. 5053 - 5071
Опубликована: Июнь 26, 2023
The
synthesis
of
two
new
hexahydroisoquinoline-4-carbonitrile
derivatives
(3a
and
3b)
is
reported
along
with
spectroscopic
data
their
crystal
structures.
In
compound
3a,
the
intramolecular
O—H···O
hydrogen
bond
constraints
acetyl
hydroxyl
groups
to
be
syn.
crystal,
inversion
dimers
are
generated
by
C—H···O
bonds
connected
into
layers
parallel
(10–1)
additional
bonds.
stacked
Cl···S
contacts
0.17
Å
less
than
sum
respective
van
der
Waals
radii.
conformation
3b
partially
determined
bond.
A
puckering
analysis
tetrahydroisoquinoline
unit
was
performed.
together
C—H···π(ring)
interactions
form
(01–1)
which
pack
normal
interactions.
To
understand
binding
efficiency
stability
title
molecules,
molecular
docking,
100
ns
dynamic
simulation
analyses
were
performed
CDK5A1.
rationalize
structure-activity
relationship(s),
a
DFT
study
at
B3LYP/6-311++G**
theoretical
level
also
done.
3D
Hirshfled
surfaces
taken
investigate
packings
both
compounds.
addition,
ADMET
properties
explored.Communicated
Ramaswamy
H.
Sarma
Pharmaceuticals,
Год журнала:
2023,
Номер
16(3), С. 463 - 463
Опубликована: Март 20, 2023
COVID-19
infection
is
now
considered
one
of
the
leading
causes
human
death.
As
an
attempt
towards
discovery
novel
medications
for
pandemic,
nineteen
compounds
containing
1,2,3-triazole
side
chains
linked
to
phenylpyrazolone
scaffold
and
terminal
lipophilic
aryl
parts
with
prominent
substituent
functionalities
were
designed
synthesized
via
a
click
reaction
based
on
our
previous
work.
The
assessed
using
in
vitro
effect
growth
SARS-CoV-2
virus-infested
Vero
cells
different
compound
concentrations:
1
10
μM.
data
revealed
that
most
these
derivatives
showed
potent
cellular
anti-COVID-19
activity
inhibited
viral
replication
by
more
than
50%
no
or
weak
cytotoxic
harboring
cells.
In
addition,
assay
employing
SARS-CoV-2-Main
protease
inhibition
was
done
test
inhibitors'
ability
block
common
primary
virus
as
mode
action.
obtained
results
show
non-linker
analog
6h
two
amide-based
linkers
6i
6q
active
IC50
values
5.08,
3.16,
7.55
μM,
respectively,
against
comparison
selective
antiviral
agent
GC-376.
Molecular
modeling
studies
placement
within
binding
pocket
which
reveal
conserved
residues
hydrogen
bonding
non-hydrogen
interactions
fragments:
triazole
scaffold,
part,
linker.
Moreover,
stability
their
target
also
studied
analyzed
molecular
dynamic
simulations.
physicochemical
toxicity
profiles
predicted,
behave
low
organ
toxicity.
All
research
point
potential
usage
new
chemotype
promising
leads
be
explored
vivo
might
open
door
rational
drug
development
Main
medicines.
Journal of Biomolecular Structure and Dynamics,
Год журнала:
2023,
Номер
41(21), С. 11518 - 11534
Опубликована: Янв. 24, 2023
A
class
of
2-(1H-imidazol-1-yl)-1-phenylethyl
cinnamates
6a-6j
and
2-(1H-benzo[d]imidazol-1-yl)-1-phenylethyl
7a-7j
were
synthesized,
their
synthesis
was
validated
using
various
spectroscopic
techniques
like
IR,
NMR,
Mass
spectrometry.
In
addition,
the
compounds
assessed
for
in-vitro
antibacterial
against
gram-positive
gram-negative
strains
antifungal
six
different
fungal
strains.
Compounds
6
g,
7
b,
7f,
g
exhibited
significant
activity
all
bacterial
ranging
from
MIC
=
12.5-50
µg/mL,
considerable
MFC
125-200
µg/mL.
molecular
docking
study
indicated
that
7j
could
be
lodged
in
active
pocket
inhibit
C.
albicans
Sterol
14α-demethylase
(CYP51)
protein
via
interactions,
these
studies
validate
results.
Different
parameters
100
ns
MD
simulation
are
investigated
to
evaluate
dynamic
stability
protein-ligand
complexes.
According
study,
proposed
effectively
kept
interaction
structural
integrity
within
14-demethylase.
promising
lead
searching
novel
drug-like
molecules.
Furthermore,
silico
ADME
indicates
possess
physicochemical
properties
orally
bioavailable.Communicated
by
Ramaswamy
H.
Sarma.
Chemical Physics Impact,
Год журнала:
2022,
Номер
5, С. 100122 - 100122
Опубликована: Ноя. 7, 2022
•
Some
novel
compounds
Synthesized
as
antiviral
drug
for
HBC
and
HCV
NBO
analysis
used
to
explain
charge
transfer
of
the
synthesized
leading
stability
The
titled
molecules
gave
better
binding
affinity
compared
Tolbivudine
Sofosbuvir
which
are
standard
drugs
compound
C,
has
highest
second
order
perturbation
energies
but
least
reactive.
need
particularly
hepatitis
B
(HBV)
C
(HCV)
virus
cannot
be
over
emphasized
hence,
this
work
focuses
on
intermolecular
interaction
three
diazenylphenyl
compounds;
5-((E)-(4-((E)-(3-hydroxy-nitrosonaphthalen-1-yl)diazinyl)phenyl)diazinyl)-3,8a-dihydroquinolin-8-ol,
(Z)-4-(E-(4-(E)-(2,4-dihydroxyphenyl)phenyl)diazinyl-2-(hydroxyamino)-4a,8a-dihyroapthalen-1(2H)-one,
4-((E)-(4-((E)-(2-hydroxy-3-nitrosophenyl)diazenyl)phenyl)diazenyl)-4a,8a-dihydronaphthalen-1(4H)-one
depicted
A,
respectively.
We
have
performed
a
comprehensive
quantum
computational
study
ascertain
likeness
molecules.
Interestingly,
Compound
was
found
most
stable
A
B.
In
Density
state
(DOS)
studies,
hydrogen
observed
peak
in
antibonding
region
whereas
carbon
values
at
bonding
molecular
orbitals.
energies.
dynamics
simulation
individual
indicate
that
+
4MWF
complex
energy
than
other
complexes
RMSD
targeted
K7F,
6CWT,
5YAX
proteins
more
conformationally
when
bound
with
Antiviral
property
investigated
by
docking
selected
viral
proteins.
studied
were
Telbivudine
sofosbuvir
drugs.
Journal of Biomolecular Structure and Dynamics,
Год журнала:
2023,
Номер
41(21), С. 12411 - 12425
Опубликована: Янв. 20, 2023
Treatment
options
for
the
management
of
breast
cancer
are
still
inadequate.
This
inadequacy
is
attributed
to
lack
effective
targeted
medications,
often
resulting
in
recurrence
metastatic
disorders.
Cumulative
evidence
suggests
that
epidermal
growth
factor
receptor
(EGFR-TK)
and
cyclin-dependent
kinases-9
(CDK-9)
overexpression
correlates
with
worse
overall
survival
patients.
Pyranopyrazole
pyrazolone
privileged
development
anticancer
agents.
Inspired
by
this
proven
scientific
fact,
we
report
here
synthesis
two
new
series
suggested
molecules
incorporating
both
heterocycles
together
their
characterization
IR,
1H
NMR,
13C
NMR-DEPT,
X-ray
diffraction
methods.
An
attempt
get
pyranopyrazole-gold
complexes
was
conducted
but
unexpectedly
yielded
benzylidene-2,4-dihydro-3H-pyrazol-3-one
instead.
unexpected
result
confirmed
crystallographic
analysis.
All
newly
synthesized
compounds
were
assessed
anti-proliferative
activity
against
different
human
cells,
obtained
results
compared
reference
drug
Staurosporine.
The
target
revealed
variable
cytotoxicity
IC50
at
a
low
micromolar
range
superior
selectivity
indices.
Target
enzyme
EGFR-TK
CDK-9
assays
showed
22
23
effectively
inhibited
biological
targets
values
0.143
0.121
µM,
respectively.
Molecular
docking
experiments
molecular
dynamics
simulation
also
further
rationalize
vitro
results.Communicated
Ramaswamy
H.
Sarma.
Journal of Biomolecular Structure and Dynamics,
Год журнала:
2023,
Номер
41(24), С. 15243 - 15261
Опубликована: Март 13, 2023
All
the
previously
reported
phenylpyrazoles
as
carbonic
anhydrase
inhibitors
(CAIs)
were
found
to
have
small
sizes
and
high
levels
of
flexibility,
hence
showed
low
selectivity
profiles
toward
a
particular
isoform
CA.
Herein,
we
report
development
more
rigid
ring
system
bearing
sulfonamide
hydrophilic
head
lipophilic
tail
develop
novel
molecules
that
are
suggested
better
special
CA
isoform.
Accordingly,
three
sets
pyrano[2,3-c]pyrazoles
attached
with
aryl
hydrophobic
synthesized
enhance
specific
human
anhydrases
(hCAs).
The
impact
both
attachments
on
potency
has
been
extensively
discussed
in
terms
vitro
cytotoxicity
evaluation
under
hypoxic
conditions,
structure-activity
relationship
enzyme
assay.
new
candidates
displayed
good
cytotoxic
activities
against
breast
colorectal
carcinomas.
Results
assay
demonstrated
preferential
compounds
22,
24
27
inhibit
IX
hCAs
selectively.
Wound-healing
also
performed
revealed
potential
decrease
wound
closure
percentage
MCF-7
cells.
Molecular
docking
molecular
orbital
analysis
finally
conducted.
indicate
binding
interactions
several
crucial
amino
acids
hCA
IX.Communicated
by
Ramaswamy
H.
Sarma.