Bulletin of the Society of Systematic Biologists,
Год журнала:
2023,
Номер
2(1), С. 1 - 35
Опубликована: Дек. 8, 2023
Biologists
and
philosophers
of
science
have
been
unable
to
fully
resolve
the
decades-long
controversy
as
what
kind
unit
living
biodiversity
should
receive
valued
label
“species”:
reproductive
communities
(among
sexual
organisms),
genealogical
groups,
or
clusters
organisms
that
share
traits.
Among
these
choices,
which
represent
a
spectrum
from
process
history
observable
outcome
(respectively),
latter
(more
operationalist)
concepts
are
not
viable.
Species
must
embody
imply
cohesive
integrating
processes
such
interbreeding
shared
ecological
pressures
if
they
sufficient
power
bear
burden
we
give
them:
predict
explain
traits
across
genome
among
organisms.
This
commitment
is
needed
whether
biologists
use
species
taxonomic
containers
synthesize
data,
minimal
phylogenetic
units,
actors
in
evolutionary
diversification.
These
varied
uses
can
be
satisfied
via
concept
community,
but
strict
Biological
Concept
(BSC).
Its
two
drawbacks
focus
on
contemporary
restriction
intrinsic
factors.
Current
compatibility
may
future
matings,
it
does
well
genes
already
have.
The
alive
today
were
shaped
by
isolating
factors
past,
those
present,
whatever
extent
differ.
most
broadly-useful
therefore
see
retrospectively,
past.
As
well,
BSC’s
exclusion
extrinsic
renders
each
its
units
incomplete
explanation
synthesis.
Reproductive
nature
isolated
just
(genetic)
differences,
also
purely
(e.g.,
geographic)
Such
real,
natural
entities
whose
integrated
self-reinforcing
constrained
descent
aligned
distribution
many
Retrospective
Community
(RRCC),
formalized
mathematically
multispecies
coalescent
models,
justifies
traditional
practice
taxonomists
using
morphological
data
seek
echoes
past
cohesion.
However,
naturally
deserve
ranked
species,
demes
populations,
vexing
question.
There
no
natural,
discrete
broadly
informative
rank
applies
universally,
perhaps
even
usually.
To
justified,
justified
for
asexual
sexuals.
presence
absence
sex
one
example
variability
confront.
Because
vary
clades,
useful
broadly-applicable
cannot
specify
detailed
mechanisms.
Nor
perfectly
align
named
taxonomy
with
evolution,
because
structured
match
taxonomy’s
partition
boxes.
Taxonomic
approximate,
only
units.
Settling
retrospection,
letting
go
meaning
rank,
accepting
approximation
allow
biology
turn
far
more
daunting
task:
listening
world
understand
interacting
built
distinction
identity,
emerging
out
into
present
day.
Evolutionary Applications,
Год журнала:
2025,
Номер
18(4)
Опубликована: Март 31, 2025
ABSTRACT
Tree
species
are
often
locally
adapted
to
their
environments,
but
the
extent
which
environmental
adaptation
contributes
incipient
speciation
is
unclear.
One
of
rarest
pines
in
world,
Torrey
pine
(
Pinus
torreyana
Parry),
persists
naturally
across
one
island
and
mainland
population
southern
California.
The
two
populations
morphologically
genetically
differentiated
experience
some
connectivity,
making
it
an
ideal
system
for
assessing
evolution
reproductive
isolation.
Previous
work
has
found
evidence
heterosis
F1
mainland‐island
hybrids,
suggesting
genetic
rescue
could
be
beneficial
absence
barriers.
Using
ddRADseq
GWAS
a
common
garden
experiment
island,
mainland,
individuals,
we
identified
candidate
loci
environmentally
driven
isolation,
function,
relationship
fitness
proxies.
By
simulating
neutral
admixture
between
populations,
that
exhibited
reduced
heterozygosity
F1s,
selection
against
admixture.
SNPs
with
were
enriched
growth
pollination
functions,
variants
involved
barriers
populations.
locus
strong
associations
proxies
garden,
allele
conferring
increased
fitness.
If
this
experiences
divergent
natural
promote
Finally,
although
hybridization
largely
fixation
F1s
initially,
indicating
likely
due
masking
deleterious
alleles,
emergence
isolation
may
diminish
longer‐term
benefits
F2
or
advanced‐generation
hybrids.
As
interpopulation
rescue,
caution
warranted
where
gene
flow
diverged
result
if
have
evolved.
Abstract
Speciation
has
been
termed
Darwin’s
mystery
of
mysteries.
I
suggest
that
whether
speciation
is
deemed
mysterious
species-concept
dependent.
review
under
the
biological
species
concept
(BSC)
and
phylogenetic
(PSC)
with
a
focus
on
geography
evolutionary
processes
avian
speciation.
In
birds,
dominant
geographic
mode
allopatry.
Under
BSC,
requires
intrinsic
reproductive
isolation
between
taxa,
an
epiphenomenon,
process
appeared
because
varied
ways
can
arise
sister
taxa.
Using
to
rank
taxa
as
lead
paraphyletic
which
are
inappropriate
for
comparative
studies.
PSC,
involves
evolution
diagnostic
characteristics
allopatric
populations
via
genetic
or
phenotypic
drift,
natural
selection,
sexual
not
mysterious.
Here
place
pairs
New
World
warblers
along
continuum,
revealed
some
currently
considered
actually
retain
ancestral
ability
hybridize.
A
BSC
PSC
classification
Galapagos
finches
reveals
differences
owing
hybridization.
Any
study
should
declare
concept,
criteria
recognizing
species,
research
program
identify
lineage
divergence
isolation.
Molecular Ecology,
Год журнала:
2025,
Номер
unknown
Опубликована: Июнь 4, 2025
ABSTRACT
The
spatial
distribution
of
the
European
anchovy
has
expanded
in
northern
part
its
range
Northeast
Atlantic
recent
decades.
However,
whether
this
results
from
a
northward
shift
southern
conspecifics
or
expansion
local
population
is
unknown.
Using
for
first
time
whole‐genome
sequencing,
we
explore
current
patterns
genetic
diversity
and
sub‐structuring
Atlantic,
with
special
focus
on
recently
North
Sea
areas.
Genomic
data
suggested
three
distinct
groups:
Northern
(North
Kattegat),
Southern
(Ireland
Central
Portugal)
Cadis
(South
Portugal).
Despite
most
genome
being
homogenised
by
high
levels
gene
flow
characteristic
small
pelagic
fish,
several
large
regions
differentiation
were
observed.
This
suggests
that
genomic
boundaries
might
be
maintained
adaptation
within
chromosome
structural
variants
(inversions).
Admixture
analysis
indicates
ongoing
involves
both
migrants
origin
population.
Historical
demographic
inference
anchovies
survived
last
glacial
period
sizes,
followed
split
into
groups
at
end
maximum.
group
then
as
ice
sheets
retreated,
an
involving
number
individuals,
which
consistent
retention
diversity.
In
comparison
other
found
(deeply
divergent
groups,
no
loss
during
expansion,
mixing
between
groups)
align
well
those
sprat,
while
sardines
fit
pattern
leading‐edge
population,
reduced
much
shallower
divergence
populations.
study
contributes
to
better
understanding
structure,
shifts
fish
under
climate
change,
informing
conservation
management
efforts.
Bulletin of the Society of Systematic Biologists,
Год журнала:
2023,
Номер
2(1), С. 1 - 35
Опубликована: Дек. 8, 2023
Biologists
and
philosophers
of
science
have
been
unable
to
fully
resolve
the
decades-long
controversy
as
what
kind
unit
living
biodiversity
should
receive
valued
label
“species”:
reproductive
communities
(among
sexual
organisms),
genealogical
groups,
or
clusters
organisms
that
share
traits.
Among
these
choices,
which
represent
a
spectrum
from
process
history
observable
outcome
(respectively),
latter
(more
operationalist)
concepts
are
not
viable.
Species
must
embody
imply
cohesive
integrating
processes
such
interbreeding
shared
ecological
pressures
if
they
sufficient
power
bear
burden
we
give
them:
predict
explain
traits
across
genome
among
organisms.
This
commitment
is
needed
whether
biologists
use
species
taxonomic
containers
synthesize
data,
minimal
phylogenetic
units,
actors
in
evolutionary
diversification.
These
varied
uses
can
be
satisfied
via
concept
community,
but
strict
Biological
Concept
(BSC).
Its
two
drawbacks
focus
on
contemporary
restriction
intrinsic
factors.
Current
compatibility
may
future
matings,
it
does
well
genes
already
have.
The
alive
today
were
shaped
by
isolating
factors
past,
those
present,
whatever
extent
differ.
most
broadly-useful
therefore
see
retrospectively,
past.
As
well,
BSC’s
exclusion
extrinsic
renders
each
its
units
incomplete
explanation
synthesis.
Reproductive
nature
isolated
just
(genetic)
differences,
also
purely
(e.g.,
geographic)
Such
real,
natural
entities
whose
integrated
self-reinforcing
constrained
descent
aligned
distribution
many
Retrospective
Community
(RRCC),
formalized
mathematically
multispecies
coalescent
models,
justifies
traditional
practice
taxonomists
using
morphological
data
seek
echoes
past
cohesion.
However,
naturally
deserve
ranked
species,
demes
populations,
vexing
question.
There
no
natural,
discrete
broadly
informative
rank
applies
universally,
perhaps
even
usually.
To
justified,
justified
for
asexual
sexuals.
presence
absence
sex
one
example
variability
confront.
Because
vary
clades,
useful
broadly-applicable
cannot
specify
detailed
mechanisms.
Nor
perfectly
align
named
taxonomy
with
evolution,
because
structured
match
taxonomy’s
partition
boxes.
Taxonomic
approximate,
only
units.
Settling
retrospection,
letting
go
meaning
rank,
accepting
approximation
allow
biology
turn
far
more
daunting
task:
listening
world
understand
interacting
built
distinction
identity,
emerging
out
into
present
day.