Molecular Ecology,
Год журнала:
2021,
Номер
31(4), С. 1142 - 1159
Опубликована: Ноя. 28, 2021
The
rapid
invasion
of
the
non-native
Phragmites
australis
(Poaceae,
subfamily
Arundinoideae)
is
a
major
threat
to
native
wetland
ecosystems
in
North
America
and
elsewhere.
We
describe
first
reference
genome
for
P.
compare
invasive
(ssp.
australis)
americanus)
genotypes
collected
from
replicated
populations
across
Laurentian
Great
Lakes
deduce
genomic
bases
driving
its
success.
Here,
we
report
novel
features
including
lineage-specific
whole
duplication,
followed
by
gene
loss
preferential
retention
genes
associated
with
transcription
factors
regulatory
functions
remaining
duplicates.
Comparative
transcriptomic
analyses
revealed
that
biotic
stress
defence
responses
were
expressed
at
higher
basal
level
genotypes,
but
showed
stronger
induction
when
challenged
fungal
endophyte.
transcriptomes,
combined
previous
ecological
environmental
data,
add
our
understanding
mechanisms
leading
invasiveness
support
development
novel,
genomics-assisted
management
approaches
Phragmites.
Philosophical Transactions of the Royal Society B Biological Sciences,
Год журнала:
2021,
Номер
376(1826), С. 20200111 - 20200111
Опубликована: Апрель 17, 2021
Epigenetics
is
the
study
of
changes
in
gene
activity
that
can
be
transmitted
through
cell
divisions
but
cannot
explained
by
DNA
sequence.
Epigenetic
mechanisms
are
central
to
regulation,
phenotypic
plasticity,
development
and
preservation
genome
integrity.
often
held
make
a
minor
contribution
evolutionary
change
because
epigenetic
states
typically
erased
reset
at
every
generation,
therefore,
not
heritable.
Nonetheless,
there
growing
appreciation
variation
makes
direct
indirect
contributions
processes.
First,
some
intergenerationally
affect
phenotype
offspring.
Moreover,
Annual Review of Plant Biology,
Год журнала:
2023,
Номер
74(1), С. 635 - 670
Опубликована: Фев. 8, 2023
Plant
invasions,
a
byproduct
of
globalization,
are
increasing
worldwide.
Because
their
ecological
and
economic
impacts,
considerable
efforts
have
been
made
to
understand
predict
the
success
non-native
plants.
Numerous
frameworks,
hypotheses,
theories
advanced
conceptualize
interactions
multiple
drivers
context
dependence
invasion
with
aim
achieving
robust
explanations
predictive
power.
We
review
these
from
community-level
perspective
rather
than
biogeographical
one,
focusing
on
terrestrial
systems,
explore
roles
intrinsic
plant
properties
in
determining
species
invasiveness,
as
well
effects
biotic
abiotic
conditions
mediating
ecosystem
invasibility
(or
resistance)
evolutionary
processes.
also
consider
fundamental
influences
human-induced
changes
at
scales
ranging
local
global
triggering,
promoting,
sustaining
invasions
discuss
how
could
alter
future
trajectories.
With
the
advent
of
Anthropocene,
biological
invasions
have
reached
an
unprecedented
level,
and
number
species
introductions
is
still
increasing
in
ever‐changing
world.
Despite
major
advances
invasion
science,
significant
debate
lack
clarity
remain
surrounding
determinants
success
introduced
species,
magnitude
dimensions
their
impact,
mechanisms
sustaining
successful
invasions.
Empirical
studies
show
divergent
impacts
alien
populations
on
ecosystems
contrasting
effects
biotic
abiotic
factors
dynamics
populations,
which
hinders
creation
a
unified
theory
Compounding
these
issues
plethora
hypotheses
that
aim
to
explain
success,
can
be
unclear
contradictory.
We
propose
synthesis
categorizes
along
timeline
invasion.
sorted
timeline,
considered
population,
community
ecosystem
levels.
This
temporal
sorting
concepts
shows
each
relevant
at
specific
stage
Although
empirical
findings
may
appear
contradictory,
when
mapped
onto
they
combined
complementary
way.
An
overall
scheme
proposed
summarise
theoretical
subjected
For
any
given
case
study,
this
framework
provides
guide
through
maze
theories
should
help
choose
appropriate
according
Biological reviews/Biological reviews of the Cambridge Philosophical Society,
Год журнала:
2024,
Номер
99(3), С. 753 - 777
Опубликована: Янв. 4, 2024
ABSTRACT
Weed
communities
influence
the
dynamics
of
ecosystems,
particularly
in
disturbed
environments
where
anthropogenic
activities
often
result
higher
pollution.
Understanding
existing
between
native
weed
and
invasive
species
is
crucial
for
effective
management
normal
ecosystem
functioning.
Recognising
potential
resistance
to
invasion
can
help
identify
suitable
plants
restoration
operations.
This
review
aims
investigate
adaptations
exhibited
by
non‐native
weeds
that
may
affect
invasions
within
environments.
Factors
such
as
ecological
characteristics,
altered
soil
conditions,
potentially
confer
a
competitive
advantage
relative
or
are
analysed.
Moreover,
roles
biotic
interactions
competition,
mutualistic
relationships,
allelopathy
shaping
described.
Emphasis
given
consideration
key
factor
provides
insights
conservation
efforts
Additionally,
this
underscores
need
further
research
unravel
underlying
mechanisms
devise
targeted
strategies.
These
strategies
aim
promote
mitigate
negative
effects
By
delving
deeper
into
these
insights,
we
gain
an
understanding
ecosystems
develop
valuable
species,
restore
long‐term
sustainability.
Frontiers in Plant Science,
Год журнала:
2023,
Номер
14
Опубликована: Май 30, 2023
Epigenetic
modifications
play
a
vital
role
in
the
preservation
of
genome
integrity
and
regulation
gene
expression.
DNA
methylation,
one
key
mechanisms
epigenetic
control,
impacts
growth,
development,
stress
response
adaptability
all
organisms,
including
plants.
The
detection
methylation
marks
is
crucial
for
understanding
underlying
these
processes
developing
strategies
to
improve
productivity
resistance
crop
There
are
different
methods
detecting
plant
such
as
bisulfite
sequencing,
methylation-sensitive
amplified
polymorphism,
genome-wide
analysis,
methylated
immunoprecipitation
reduced
representation
MS
immuno-based
techniques.
These
profiling
approaches
vary
many
aspects,
input,
resolution,
genomic
region
coverage,
bioinformatics
analysis.
Selecting
an
appropriate
screening
approach
requires
This
review
provides
overview
plants,
along
with
comparisons
efficacy
techniques
between
model
strengths
limitations
each
methodological
outlined,
importance
considering
both
technical
biological
factors
highlighted.
Additionally,
modulating
species
presented.
Overall,
this
will
assist
scientists
making
informed
decisions
when
selecting
method.
Philosophical Transactions of the Royal Society B Biological Sciences,
Год журнала:
2021,
Номер
376(1826), С. 20200123 - 20200123
Опубликована: Апрель 17, 2021
DNA
provides
the
fundamental
framework
for
heritability,
yet
heritable
trait
variation
need
not
be
completely
'hard-wired'
into
sequence.
In
plants,
epigenetic
machinery
that
controls
transposable
element
(TE)
activity,
and
which
includes
methylation,
underpins
most
known
cases
of
inherited
variants
are
independent
sequence
changes.
Here,
we
review
our
current
knowledge
extent,
mechanisms
potential
adaptive
contribution
epiallelic
at
TE-containing
alleles
in
this
group
species.
For
purpose
review,
focus
mainly
on
as
it
an
easily
quantifiable
readout
such
variation.
The
picture
emerges
is
complex.
On
one
hand,
pronounced
differences
methylation
TE
sequences
can
either
occur
spontaneously
or
induced
experimentally
en
masse
across
genome
through
genetic
means.
Many
these
epivariants
stably
over
multiple
sexual
generations,
thus
leading
to
transgenerational
inheritance.
Functional
consequences
significant,
they
typically
limited
magnitude
although
same
found
nature,
factors
involved
their
generation
setting
remain
determined.
other
moderate
reproducibly
by
environment,
again
usually
with
mild
effects,
tends
lost
generations.
Based
considerations,
argue
alleles,
rather
than
variants,
main
targets
natural
selection.
Thus,
propose
TE-associated
epivariation,
whether
stable
not,
lies
predominantly
its
capacity
modulate
mobilization
response
hence
providing
hard-wired
opportunities
flexible
exploration
phenotypic
space.
This
article
part
theme
issue
'How
does
epigenetics
influence
course
evolution?'
Genome Biology and Evolution,
Год журнала:
2023,
Номер
16(1)
Опубликована: Дек. 18, 2023
Human
activities
are
accelerating
rates
of
biological
invasions
and
climate-driven
range
expansions
globally,
yet
we
understand
little
how
genomic
processes
facilitate
the
invasion
process.
Although
most
literature
has
focused
on
underlying
phenotypic
correlates
invasiveness,
advances
in
technologies
showing
a
strong
link
between
variation
success.
Here,
consider
ability
tools
to
(i)
inform
mechanistic
understanding
(ii)
solve
real-world
issues
predicting
managing
invasions.
For
both,
examine
current
state
field
discuss
genomics
can
be
leveraged
future.
In
addition,
make
recommendations
pertinent
broader
research
issues,
such
as
data
sovereignty,
metadata
standards,
collaboration,
science
communication
best
practices
that
will
require
concerted
efforts
from
global
community.
Biological reviews/Biological reviews of the Cambridge Philosophical Society,
Год журнала:
2024,
Номер
unknown
Опубликована: Авг. 27, 2024
ABSTRACT
In
long‐lived
tree
populations,
when
environmental
change
outpaces
rates
of
evolutionary
adaptation,
plasticity
in
traits
related
to
stress
tolerance,
dormancy,
and
dispersal
may
be
vital
for
preventing
extinction.
While
a
population's
genetic
background
partly
determines
its
ability
adapt
changing
environment,
so
too
do
the
many
types
epigenetic
modifications
that
occur
within
among
which
vary
on
timescales
orders
magnitude
faster
than
emergence
new
beneficial
alleles.
Consequently,
phenotypic
driven
by
modification
especially
critical
sessile,
organisms
such
as
trees
must
rely
this
keep
pace
with
rapid
anthropogenic
change.
studies
have
reported
large
effects
DNA
methylation,
histone
modification,
non‐coding
RNAs
expression
stress‐tolerance
genes
resulting
responses,
little
is
known
about
role
these
non‐model
plants
particularly
trees.
Here,
we
review
findings
plant
epigenetics
particular
relevance
or
escape
stressors
associated
climate
Such
include
specific
influences
over
drought,
heat,
salinity
well
dormancy
traits.
We
also
highlight
promising
concerning
transgenerational
inheritance
an
‘stress
memory’
plants.
As
information
becoming
increasingly
easy
obtain,
close
outlining
ways
ecologists
can
use
better
inform
population
management
forecasting
efforts.
Understanding
molecular
mechanisms
behind
memory
species
offers
path
towards
mechanistic
understanding
trees'
responses