Accurate aging clocks based on accumulating stochastic variation DOI Creative Commons
Björn Schumacher, David H. Meyer

Research Square (Research Square), Год журнала: 2023, Номер unknown

Опубликована: Окт. 2, 2023

Abstract Aging clocks have provided one of the most significant recent breakthroughs in biology aging. Such allow determination chronological and increasingly also biological age, which is a prerequisite for assessing effectiveness interventions aging process preventive treatments age-related diseases. The advanced are based on age-dependent changes DNA methylation pattern. reproducibility such over life course has reinvigorated debate whether programmed underlies A process, however, incompatible with evolutionary theory occurs as consequence vanishing force selective pressure post-reproduction no fitness benefit by immortality soma. In fact, stochastic events been observed to occur during process. Here, we test could be built entirely variation. We find that accumulating variation sufficient accurately predict age. Moreover, current compatible random alterations or transcriptomic patterns. Our analysis unifies clock measure predicts any set data ground state at age zero used building accurate clocks.

Язык: Английский

Transcriptomic reprogramming for neuronal age reversal DOI Creative Commons
Alexandru M. Pleşa,

Michael Shadpour,

Ed Boyden

и другие.

Human Genetics, Год журнала: 2023, Номер 142(8), С. 1293 - 1302

Опубликована: Апрель 1, 2023

Aging is a progressive multifaceted functional decline of biological system. Chronic age-related conditions such as neurodegenerative diseases are leading causes death worldwide, and they becoming pressing problem for our society. To address this global challenge, there need novel, safe, effective rejuvenation therapies aimed at reversing phenotypes improving human health. With gene expression being key determinant cell identity function, in light recent studies reporting effects through genetic perturbations, we propose an age reversal strategy focused on reprogramming the transcriptome to youthful state. end, suggest using transcriptomic data from primary cells predict targets develop high-throughput aging assays, which can be used large perturbation screens. We neural particularly relevant due substantial impact neurodegeneration frailty. Of all types brain, argue that glutamatergic neurons, neuronal stem cells, oligodendrocytes represent most impactful tractable targets. Lastly, provide experimental designs anti-aging screens will likely enable development therapies, hold promise dramatically

Язык: Английский

Процитировано

7

LipidClock: A Lipid-Based Predictor of Biological Age DOI Creative Commons
Maximilian Unfried,

Li Fang Ng,

Amaury Cazenave‐Gassiot

и другие.

Frontiers in Aging, Год журнала: 2022, Номер 3

Опубликована: Май 27, 2022

Complexity is a fundamental feature of biological systems. Omics techniques like lipidomics can simultaneously quantify many thousands molecules, thereby directly capturing the underlying complexity. However, this approach transfers original complexity to resulting datasets, posing challenges in data reduction and analysis. Aging prime example process that exhibits complex behaviour across multiple scales organisation. The aging characterised by slow, cumulative detrimental changes are driven intrinsic stochasticity mediated through non-linear interactions feedback within between these levels organization (ranging from metabolites, macromolecules, organelles cells tissue organs). Only collectively over long timeframes do manifest as exponential increases morbidity mortality define aging, making problem more difficult study than aetiologies specific diseases. But aging's time dependence also be exploited extract key insights into its biology. Here we explore idea using on lipid composition lifespan an organism construct test LipidClock predict age nematode

Язык: Английский

Процитировано

11

A Year at the Forefront of Proteostasis and Aging DOI Creative Commons
Maximillian A. Thompson, Evandro A. De‐Souza

Biology Open, Год журнала: 2023, Номер 12(2)

Опубликована: Фев. 15, 2023

ABSTRACT During aging, animals experience a decline in proteostasis activity, including loss of stress-response activation, culminating the accumulation misfolded proteins and toxic aggregates, which are causal onset some chronic diseases. Finding genetic pharmaceutical treatments that can increase organismal lengthen life is an ongoing goal current research. The regulation stress responses by cell non-autonomous mechanisms appears to be potent way impact healthspan. In this Review, we cover recent findings intersection with special focus on articles preprints published between November 2021 October 2022. A significant number papers during time increased our understanding how cells communicate each other proteotoxic stress. Finally, also draw attention emerging datasets explored generate new hypotheses explain age-related collapse.

Язык: Английский

Процитировано

6

Dynamical network stability analysis of multiple biological ages provides a framework for understanding the aging process DOI Creative Commons
Glen Pridham, Andrew D. Rutenberg

The Journals of Gerontology Series A, Год журнала: 2024, Номер 79(10)

Опубликована: Янв. 11, 2024

Abstract Widespread interest in nondestructive biomarkers of aging has led to a multitude biological ages that each proffers “true” health-adjusted individual age. Although measure provides salient information on the process, they are univariate, contrast “hallmark” and “pillar” theories aging, which explicitly multidimensional, multicausal, multiscale. Fortunately, multiple can be systematically combined into multidimensional network representation. The interaction between these permits analysis effects as well quantification causal influences during both natural and, potentially, after anti-aging intervention. behavior system whole then explored using dynamical stability analysis, identifies new, efficient quantify long-term resilience scores timescale measurements (years). We demonstrate this approach set 8 from longitudinal Swedish Adoption/Twin Study Aging (SATSA). After extracting an ages, we observed physiological age, proxy for cardiometabolic health, serves central node network, implicating it key vulnerability slow, age-related decline. furthermore show while is stable, there weakly stable direction along recovery slow—on human lifespan. This slow biomarker, correlates strongly with chronological age predicts decline health—suggesting estimates important driver changes.

Язык: Английский

Процитировано

1

Epigenetic profiling and incidence of disrupted development point to gastrulation as aging ground zero in Xenopus laevis DOI Creative Commons
Bohan Zhang, Andrei E. Tarkhov, William J. Ratzan

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2022, Номер unknown

Опубликована: Авг. 4, 2022

Abstract Recent studies suggest the existence of a natural rejuvenation event during early embryonic development mice, followed by epigenetic aging. Here, profiling DNA methylation in African clawed frog, Xenopus laevis , we found that entropy basepoint maps to gastrulation stage embryogenesis and corresponds rapid increase embryo transcript abundance. We further developed frog aging clock, revealing this species epigenetically ages. Application clock developmental stages identified decrease age embryogenesis, with minimal reached around gastrulation. By examining individual trajectories 6,457 embryos, is also accompanied higher incidence disrupted development. Taken together, our data point as critical for rejuvenation, characterized lowest age, increased mortality, nadir abundance, defining ground zero where ends process begins.

Язык: Английский

Процитировано

7

Histone mark age of human tissues and cells DOI Creative Commons
Lucas Paulo de Lima Camillo, Muhammad Asif, Steve Horvath

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2023, Номер unknown

Опубликована: Авг. 22, 2023

Background Aging involves intricate epigenetic changes, with histone modifications playing a pivotal role in dynamically regulating gene expression. Our research comprehensively analyzes seven key across various tissues to understand their behavior during human aging and formulate age prediction models. Results These histone-centric models exhibit remarkable accuracy resilience against experimental artificial noise. They showcase comparable efficacy when compared DNA methylation predictors through simulation experiments. Intriguingly, our set enrichment analysis pinpoints vital developmental pathways crucial for prediction. Unlike predictors, genes previously recognized animal studies as integral are amongst the most important features of We also introduce pan-histone-mark, pan-tissue predictor that operates multiple marks, reinforcing age-related markers not restricted particular modifications. Conclusion findings underscore potential marks crafting robust shed light on tapestry alterations aging.

Язык: Английский

Процитировано

3

Relation of Known Hallmarks of Aging to the Ontogenesis Program DOI Open Access
Lev Salnikov

Open Access Journal of Gerontology & Geriatric Medicine, Год журнала: 2023, Номер 7(2)

Опубликована: Март 31, 2023

A brief assessment of the current state use Hallmarks aging is given in article. It noted that biological clock based on registration DNA methylation process only a statistical indicator and has no direct connection to known mechanisms aging, reflecting fact genome regulation during ontogenesis. In other words, not leading program, but rather it fixes result main program The same problems are inherent markers changes RNA synthesis levels different genes. our opinion, should primarily be connected with or directly reflect most fundamental bases processes which universal for any organisms.

Язык: Английский

Процитировано

2

Biological Age and Aging Clock: Aging Clock DOI
Hidekazu Yamada

ANTI-AGING MEDICINE, Год журнала: 2024, Номер unknown, С. 49 - 51

Опубликована: Янв. 1, 2024

Язык: Английский

Процитировано

0

Dynamical network stability analysis of multiple biological ages provides a framework for understanding the aging process DOI Creative Commons
Glen Pridham, Andrew D. Rutenberg

arXiv (Cornell University), Год журнала: 2023, Номер unknown

Опубликована: Янв. 1, 2023

Widespread interest in non-destructive biomarkers of aging has led to a curse plenty: multitude biological ages that each proffers 'true' health-adjusted age an individual. While measure provides salient information on the process, they are univariate, contrast "hallmark" and "pillar" theories which explicitly multidimensional, multicausal multiscale. Fortunately, multiple can be systematically combined into multidimensional network representation. The interaction between these permits analysis effects aging, as well quantification causal influences during both natural and, potentially, after anti-aging intervention. behaviour system whole then explored using dynamical stability identifies new, efficient quantify long term resilience scores timescale measurements (years). We demonstrate this approach set 8 from longitudinal Swedish Adoption/Twin Study Aging (SATSA). After extracting ages, we observed physiological age, proxy for cardiometabolic health, serves central node network, implicating it key vulnerability slow, age-related decline. furthermore show while is stable, there weakly stable direction along recovery slow - human lifespan. This biomarker correlates strongly with chronological predicts decline health suggesting estimates important driver changes.

Язык: Английский

Процитировано

0

Accurate aging clocks based on accumulating stochastic variation DOI Creative Commons
Björn Schumacher, David H. Meyer

Research Square (Research Square), Год журнала: 2023, Номер unknown

Опубликована: Окт. 2, 2023

Abstract Aging clocks have provided one of the most significant recent breakthroughs in biology aging. Such allow determination chronological and increasingly also biological age, which is a prerequisite for assessing effectiveness interventions aging process preventive treatments age-related diseases. The advanced are based on age-dependent changes DNA methylation pattern. reproducibility such over life course has reinvigorated debate whether programmed underlies A process, however, incompatible with evolutionary theory occurs as consequence vanishing force selective pressure post-reproduction no fitness benefit by immortality soma. In fact, stochastic events been observed to occur during process. Here, we test could be built entirely variation. We find that accumulating variation sufficient accurately predict age. Moreover, current compatible random alterations or transcriptomic patterns. Our analysis unifies clock measure predicts any set data ground state at age zero used building accurate clocks.

Язык: Английский

Процитировано

0