BMC Genomic Data, Год журнала: 2025, Номер 26(1)
Опубликована: Апрель 18, 2025
Язык: Английский
Nature Communications, Год журнала: 2025, Номер 16(1)
Опубликована: Март 12, 2025
Comparative genomic studies can identify genes under evolutionary constraint or specialized for trait innovation. Growing evidence suggests that also acts on non-coding regulatory sequences, exerting significant impacts fitness-related traits, although it has yet to be thoroughly explored in plants. Using the assay transposase-accessible chromatin by sequencing (ATAC-seq), we profile over 80,000 maize accessible regions (ACRs), revealing ACRs evolve faster than coding genes, with about one-third being maize-specific and regulating associated speciation. We highlight role of transposable elements (TEs) driving intraspecific innovation hundreds candidate potentially involved transcriptional rewiring during domestication. Additionally, demonstrate importance maintaining subgenome dominance controlling complex variations. This study establishes a framework analyzing trajectory plant sequences offers loci downstream exploration application breeding. Intricate regulation gene expression is important execution biology processes. Here, authors generate comprehensive map integrating ATAC-seq data 12 major tissues explore their interspecific constraints multiple Poaceae genomes.
Язык: Английский
Процитировано
0
European Journal of Pharmacology, Год журнала: 2025, Номер unknown, С. 177511 - 177511
Опубликована: Март 1, 2025
Язык: Английский
Процитировано
0
Cell Genomics, Год журнала: 2025, Номер unknown, С. 100819 - 100819
Опубликована: Март 1, 2025
Язык: Английский
Процитировано
0
BMC Genomic Data, Год журнала: 2025, Номер 26(1)
Опубликована: Апрель 18, 2025
Язык: Английский
Процитировано
0