Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes DOI Creative Commons
Delphine Giraud, Nathalie Choisne, Marilyne Summo

et al.

BMC Genomic Data, Journal Year: 2025, Volume and Issue: 26(1)

Published: April 18, 2025

Language: Английский

Constraint of accessible chromatins maps regulatory loci involved in maize speciation and domestication DOI Creative Commons
Y Liu, Xiang Gao, Hongjun Liu

et al.

Nature Communications, Journal Year: 2025, Volume and Issue: 16(1)

Published: March 12, 2025

Comparative genomic studies can identify genes under evolutionary constraint or specialized for trait innovation. Growing evidence suggests that also acts on non-coding regulatory sequences, exerting significant impacts fitness-related traits, although it has yet to be thoroughly explored in plants. Using the assay transposase-accessible chromatin by sequencing (ATAC-seq), we profile over 80,000 maize accessible regions (ACRs), revealing ACRs evolve faster than coding genes, with about one-third being maize-specific and regulating associated speciation. We highlight role of transposable elements (TEs) driving intraspecific innovation hundreds candidate potentially involved transcriptional rewiring during domestication. Additionally, demonstrate importance maintaining subgenome dominance controlling complex variations. This study establishes a framework analyzing trajectory plant sequences offers loci downstream exploration application breeding. Intricate regulation gene expression is important execution biology processes. Here, authors generate comprehensive map integrating ATAC-seq data 12 major tissues explore their interspecific constraints multiple Poaceae genomes.

Language: Английский

Citations

0
Exploring the Intricacies of Antimicrobial Resistance: Understanding Mechanisms, Overcoming Challenges, and Pioneering Innovative Solutions DOI

Shahbaz Ul Haq,

Lingchong Wang, Amjad Islam Aqib

et al.

European Journal of Pharmacology, Journal Year: 2025, Volume and Issue: unknown, P. 177511 - 177511

Published: March 1, 2025

Language: Английский

Citations

0
Conservation of dichromatin organization along regional centromeres DOI Creative Commons
Danilo Dubocanin, Gabrielle A. Hartley, Adriana E. Sedeño-Cortés

et al.

Cell Genomics, Journal Year: 2025, Volume and Issue: unknown, P. 100819 - 100819

Published: March 1, 2025

Language: Английский

Citations

0
Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes DOI Creative Commons
Delphine Giraud, Nathalie Choisne, Marilyne Summo

et al.

BMC Genomic Data, Journal Year: 2025, Volume and Issue: 26(1)

Published: April 18, 2025

Language: Английский

Citations

0