Natural
history
collections
(NHCs)
represent
an
enormous
and
largely
untapped
wealth
of
information
on
the
Earth's
biota,
made
available
through
GBIF
as
digital
preserved
specimen
records.
Precise
knowledge
where
specimens
were
collected
is
paramount
to
rigorous
ecological
studies,
especially
in
field
species
distribution
modelling.
Here,
we
present
a
first
comprehensive
analysis
georeferencing
quality
for
all
records
served
by
GBIF,
illustrate
impact
that
coordinate
uncertainty
may
have
predicted
potential
distributions.
We
used
analyse
availability
coordinates
associated
spatial
across
geography,
resolution,
taxonomy,
publishing
institutions
collection
time.
three
plant
their
native
ranges
different
parts
world
show
found
38%
180+
million
provide
only
18%
uncertainty.
Georeferencing
determined
more
country
than
taxonomic
group.
Distinct
practices
are
determinant
implicit
characteristics
difficulty
specimens.
Availability
contrasts
regions.
Uncertainty
values
not
normally
distributed
but
peak
at
very
distinct
values,
which
can
be
traced
back
specific
regions
world.
leads
wide
spectrum
range
sizes
when
modelling
distributions,
potentially
affecting
conclusions
biogeographical
climate
change
studies.
In
summary,
digitised
fraction
world's
NHCs
far
from
optimal
terms
mainly
depends
hosted.
A
collective
effort
between
communities
around
NHC
institutions,
research
data
infrastructure
needed
bring
par
with
its
importance
relevance
research.
Nature Climate Change,
Год журнала:
2022,
Номер
12(6), С. 587 - 592
Опубликована: Июнь 1, 2022
Abstract
Climate
change
is
a
pervasive
threat
to
biodiversity.
While
range
shifts
are
known
consequence
of
climate
warming
contributing
regional
community
change,
less
about
how
species’
positions
shift
within
their
climatic
niches.
Furthermore,
whether
the
relative
importance
different
variables
prompting
such
varies
with
changing
remains
unclear.
Here
we
analysed
four
decades
data
for
1,478
species
birds,
mammals,
butterflies,
moths,
plants
and
phytoplankton
along
1,200
km
high
latitudinal
gradient.
The
drivers
varied
non-uniformly
progressing
change.
turnover
among
was
limited,
position
niche
shifted
substantially.
A
greater
proportion
responded
at
higher
latitudes,
where
changes
were
stronger.
These
diverging
imprints
restructure
full
biome,
making
it
difficult
generalize
biodiversity
responses
raising
concerns
ecosystem
integrity
in
face
accelerating
Methods in Ecology and Evolution,
Год журнала:
2022,
Номер
13(8), С. 1661 - 1669
Опубликована: Апрель 20, 2022
Abstract
Species
distribution
models
(SDM)
are
widely
used
in
diverse
research
areas
because
of
their
simple
data
requirements
and
application
versatility.
However,
SDM
outcomes
sensitive
to
input
methodological
choices.
Such
sensitivity
applications
mean
that
flexibility
is
necessary
create
SDMs
with
tailored
protocols
for
a
given
set
model
use.
We
introduce
the
r
package
flexsdm
supporting
flexible
species
modelling
workflows.
functions
arguments
serve
as
building
blocks
construct
specific
protocol
user's
needs.
The
main
features
flexibility,
integration
other
tools,
simplicity
objects
returned
function
speed.
As
an
illustration,
we
define
complete
workflow
California
red
fir
Abies
magnifica
.
This
provides
by
incorporating
comprehensive
tools
structured
three
steps:
(a)
Pre‐modelling
prepare
input,
example,
sampling
bias
correction,
pseudo‐absences
background
points,
partitioning,
reducing
collinearity
predictors.
(b)
Modelling
allow
fitting
evaluating
different
approaches,
including
individual
algorithms,
tuned
models,
ensembles
small
ensemble
models.
(c)
Post‐modelling
include
related
models'
predictions,
interpolation
overprediction
correction.
Because
comprises
large
part
process,
from
outlier
detection
users
can
delineate
partial
or
workflows
based
on
combination
meet
Biological reviews/Biological reviews of the Cambridge Philosophical Society,
Год журнала:
2022,
Номер
98(1), С. 19 - 33
Опубликована: Авг. 21, 2022
Understanding
how
species
respond
to
climate
change
is
key
informing
vulnerability
assessments
and
designing
effective
conservation
strategies,
yet
research
efforts
on
wildlife
responses
fail
deliver
a
representative
overview
due
inherent
biases.
Bats
are
species-rich,
globally
distributed
group
of
organisms
that
thought
be
particularly
sensitive
the
effects
because
their
high
surface-to-volume
ratios
low
reproductive
rates.
We
systematically
reviewed
literature
bat
provide
an
current
state
knowledge,
identify
gaps
biases
highlight
future
needs.
found
studies
geographically
biased
towards
Europe,
North
America
Australia,
temperate
Mediterranean
biomes,
thus
missing
substantial
proportion
diversity
thermal
responses.
Less
than
half
published
concrete
evidence
for
change.
For
over
third
studied
species,
response
only
based
predictive
distribution
models.
Consequently,
most
frequently
reported
involve
range
shifts
(57%
species)
changes
in
patterns
(26%).
showed
variety
responses,
including
both
positive
(e.g.
expansion
population
increase)
negative
(range
contraction
decrease),
although
extreme
events
were
always
or
neutral.
Spatial
varied
outcome
across
families,
with
almost
all
taxonomic
groups
featuring
expansions
contractions,
while
demographic
strongly
outcomes,
among
Pteropodidae
Molossidae.
The
commonly
used
correlative
modelling
approaches
can
applied
many
but
do
not
mechanistic
insight
into
behavioural,
physiological,
phenological
genetic
There
was
paucity
experimental
(26%),
small
396
covered
examined
using
long-term
and/or
(11%),
even
though
they
more
informative
about
emphasise
need
empirical
unravel
multifaceted
nature
bats'
standardised
study
designs
will
enable
synthesis
meta-analysis
literature.
Finally,
we
stress
importance
overcoming
geographic
disparities
through
strengthening
capacity
Global
South
comprehensive
view
terrestrial
biodiversity
Journal of Biogeography,
Год журнала:
2023,
Номер
50(9), С. 1533 - 1545
Опубликована: Апрель 10, 2023
Abstract
Species
distribution
modelling
(SDM),
also
called
environmental
or
ecological
niche
modelling,
has
developed
over
the
last
30
years
as
a
widely
used
tool
in
core
areas
of
biogeography
including
historical
biogeography,
studies
diversity
patterns,
species
ranges,
ecoregional
classification,
conservation
assessment
and
projecting
future
global
change
impacts.
In
50th
anniversary
year
Journal
Biogeography
,
I
reflect
on
developments
illustrate
how
embedded
methodology
become
all
speculate
directions
field.
Challenges
to
raised
this
journal
2006
have
been
addressed
significant
degree.
Those
challenges
are
clarification
concept;
improved
sample
design
for
occurrence
data;
model
parameterization;
predictor
selection;
assessing
performance
transferability;
integrating
correlative
process
models
distributions.
SDM
is
used,
often
conjunction
with
other
evidence,
understand
past
range
dynamics,
identify
patterns
drivers
biological
diversity,
limits,
define
delineate
ecoregions,
estimate
distributions
biodiversity
elements
relation
protected
status
prioritize
action,
forecast
shifts
response
climate
scenarios.
Areas
progress
that
may
more
accessible
useful
tools
include
genetically
informed
community
models.
Biological reviews/Biological reviews of the Cambridge Philosophical Society,
Год журнала:
2023,
Номер
98(6), С. 2243 - 2270
Опубликована: Авг. 9, 2023
ABSTRACT
In
an
epoch
of
rapid
environmental
change,
understanding
and
predicting
how
biodiversity
will
respond
to
a
changing
climate
is
urgent
challenge.
Since
we
seldom
have
sufficient
long‐term
biological
data
use
the
past
anticipate
future,
spatial
climate–biotic
relationships
are
often
used
as
proxy
for
biotic
responses
change
over
time.
These
‘space‐for‐time
substitutions’
(SFTS)
become
near
ubiquitous
in
global
biology,
but
with
different
subfields
largely
developing
methods
isolation.
We
review
climate‐focussed
SFTS
four
ecology
evolution,
each
focussed
on
type
variable
–
population
phenotypes,
genotypes,
species'
distributions,
ecological
communities.
then
examine
similarities
differences
between
terms
methods,
limitations
opportunities.
While
wide
range
applications,
two
main
approaches
applied
across
subfields:
situ
gradient
transplant
experiments.
find
that
share
common
relating
(
i
)
causality
identified
ii
transferability
these
relationships,
i.e.
whether
observed
space
equivalent
those
occurring
Moreover,
despite
widespread
application
research,
key
assumptions
remain
untested.
highlight
opportunities
enhance
robustness
by
addressing
limitations,
particular
emphasis
where
could
be
shared
subfields.
Global Change Biology,
Год журнала:
2023,
Номер
29(19), С. 5509 - 5523
Опубликована: Авг. 7, 2023
Abstract
Citizen
science
initiatives
have
been
increasingly
used
by
researchers
as
a
source
of
occurrence
data
to
model
the
distribution
alien
species.
Since
citizen
presence‐only
suffer
from
some
fundamental
issues,
efforts
made
combine
these
with
those
provided
scientifically
structured
surveys.
Surprisingly,
only
few
studies
proposing
integration
evaluated
contribution
this
process
effective
sampling
species'
environmental
niches
and,
consequently,
its
effect
on
predictions
new
time
intervals.
We
relied
niche
overlap
analyses,
machine
learning
classification
algorithms
and
ecological
models
compare
ability
scientific
surveys,
along
their
integration,
in
capturing
realized
13
invasive
species
Italy.
Moreover,
we
assessed
differences
current
future
invasion
risk
predicted
each
set
under
multiple
global
change
scenarios.
showed
that
surveys
captured
similar
though
highlighting
exclusive
portions
associated
clearly
identifiable
conditions.
In
terrestrial
species,
granted
highest
gain
space
pooled
niches,
determining
an
increased
biological
risk.
A
aquatic
modelled
at
regional
scale
reported
net
loss
compared
survey
suggesting
may
also
lead
contraction
niches.
For
lower
These
findings
indicate
represent
valuable
predicting
spread
especially
within
national‐scale
programmes.
At
same
time,
collected
poorly
known
scientists,
or
strictly
local
contexts,
strongly
affect
quantification
taxa
prediction
Diversity and Distributions,
Год журнала:
2022,
Номер
29(1), С. 39 - 50
Опубликована: Окт. 30, 2022
Abstract
Ecosystem
structure,
especially
vertical
vegetation
is
one
of
the
six
essential
biodiversity
variable
classes
and
an
important
aspect
habitat
heterogeneity,
affecting
species
distributions
diversity
by
providing
shelter,
foraging,
nesting
sites.
Point
clouds
from
airborne
laser
scanning
(ALS)
can
be
used
to
derive
such
detailed
information
on
structure.
However,
public
agencies
usually
only
provide
digital
elevation
models,
which
do
not
Calculating
structure
variables
ALS
point
requires
extensive
data
processing
remote
sensing
skills
that
most
ecologists
have.
extremely
valuable
for
many
analyses
use
distribution.
We
here
propose
10
should
easily
accessible
researchers
stakeholders
through
national
portals.
In
addition,
we
argue
a
consistent
selection
their
systematic
testing,
would
allow
continuous
improvement
list
keep
it
up‐to‐date
with
latest
evidence.
This
initiative
particularly
needed
advance
ecological
research
open
datasets
but
also
guide
potential
users
in
face
increasing
availability
global
products.
Ecology Letters,
Год журнала:
2022,
Номер
25(3), С. 673 - 685
Опубликована: Фев. 24, 2022
Climate
change
is
predicted
to
drive
geographical
range
shifts,
leading
fluctuations
in
species
richness
(SR)
worldwide.
However,
the
effect
of
these
changes
on
functional
diversity
(FD)
remains
unclear,
part
because
comprehensive
species-level
trait
data
are
generally
lacking
at
global
scales.
Here,
we
use
morphometric
and
ecological
traits
for
8268
bird
estimate
impact
climate
avian
FD.
We
show
that
future
assemblages
likely
undergo
substantial
shifts
structure,
with
a
magnitude
greater
than
from
SR
alone,
direction
varying
according
location
trophic
guild.
For
example,
our
models
predict
FD
insect
predators
will
increase
higher
latitudes
concurrent
losses
mid-latitudes,
whereas
seed
dispersing
birds
fluctuate
across
tropics.
Our
findings
highlight
potential
continental-scale
implications
ecosystem
function
resilience.
Global Change Biology,
Год журнала:
2022,
Номер
28(22), С. 6586 - 6601
Опубликована: Авг. 5, 2022
Projecting
the
future
distributions
of
commercially
and
ecologically
important
species
has
become
a
critical
approach
for
ecosystem
managers
to
strategically
anticipate
change,
but
large
uncertainties
in
projections
limit
climate
adaptation
planning.
Although
distribution
are
primarily
used
understand
scope
potential
change-rather
than
accurately
predict
specific
outcomes-it
is
nonetheless
essential
where
why
can
give
implausible
results
identify
which
processes
contribute
uncertainty.
Here,
we
use
series
simulated
distributions,
an
ensemble
252
models,
three
regional
ocean
projections,
isolate
influences
uncertainty
from
earth
system
model
spread
ecological
modeling.
The
simulations
encompass
marine
with
different
functional
traits
preferences
more
broadly
address
resource
manager
fishery
stakeholder
needs,
provide
true
state
evaluate
projections.
We
present
our
relative
degree
environmental
extrapolation
historical
conditions,
helps
facilitate
interpretation
by
modelers
working
diverse
systems.
found
associated
models
exceed
generated
diverging
(up
70%
total
2100),
that
this
result
was
consistent
across
traits.
Species
increased
through
time
related
extrapolated
into
novel
conditions
moderated
how
well
captured
underlying
dynamics
driving
distributions.
predictive
power
remained
relatively
high
first
30
years
alignment
period
stakeholders
make
strategic
decisions
based
on
information.
By
understanding
sources
uncertainty,
they
change
at
forecast
horizons,
recommendations
projecting
under
global
change.
Ecology and Evolution,
Год журнала:
2022,
Номер
12(2)
Опубликована: Фев. 1, 2022
The
influence
of
climate
on
the
distribution
taxa
has
been
extensively
investigated
in
last
two
decades
through
Habitat
Suitability
Models
(HSMs).
In
this
context,
Worldclim
database
represents
an
invaluable
data
source
as
it
provides
worldwide
surfaces
for
both
historical
and
future
time
horizons.
Thousands
HSMs-based
papers
have
published
taking
advantage
1.4,
first
online
version
repository.
2017,
2.1
was
released.
Here,
we
evaluated
spatially
explicit
prediction
mismatch
at
continental
scale,
focusing
Europe,
between
HSMs
fitted
using
from
versions
(between-version
differences).
To
aim,
simulated
occurrence
probability
presence-absence
across
Europe
four
virtual
species
(VS)
with
differing
climate-occurrence
relationships.
For
each
VS,
upon
uncorrelated
bioclimatic
variables
derived
three
grid
resolutions.
factor
combination,
attaining
sufficient
discrimination
performance
independent
test
were
projected
under
current
conditions
various
scenarios,
importance
scores
single
computed.
failed
accurately
retrieving
relationships
climate-tolerant
VS
one
occurring
a
narrow
combination
climatic
conditions.
Under
climate,
noticeable
between-version
emerged
most
these
VSs,
whose
suitability
mainly
depended
diurnal
or
yearly
variability
temperature;
differently,
differences
more
clustered
toward
areas
showing
extreme
values,
like
mountainous
massifs
southern
regions,
VSs
responding
to
average
temperature
precipitation
trends.
chosen
emission
scenarios
Global
Climate
did
not
evidently
discrepancies,
while
resolution
synergistically
interacted
VSs'
niche
characteristics
determining
extent
such
differences.
Our
findings
could
help
re-evaluating
previous
biodiversity-related
works
relying
geographical
predictions
Worldclim-based
HSMs.