bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Фев. 12, 2024
Abstract
Despite
being
among
the
most
abundant
biological
entities
on
earth,
bacteriophage
(phage)
remain
an
understudied
component
of
host-associated
systems.
One
limitation
to
studying
phage
is
lack
consensus
methods
for
sampling
communities.
Here,
we
compare
paired
total
metagenomes
and
viral
size
fraction
(viromes)
as
investigating
dsDNA
communities
associated
with
GI
tract
two
bee
species:
European
honey
Apis
mellifera
eastern
bumble
Bombus
impatiens
.
We
find
that
viromes
successfully
enriched
phage,
thereby
increasing
recovery,
but
only
in
bees.
In
contrast,
bees,
recovered
greater
diversity.
Across
both
species,
better
sampled
low
abundance
occupancy
while
were
biased
towards
temperate
prominent
phage.
Additionally,
many
captured
by
absent
altogether
from
viromes.
Comparing
between
show
commercially
reared
bees
are
significantly
reduced
diversity
compared
likely
reflecting
differences
bacterial
titer
a
broader
context,
these
results
highlight
complementary
nature
targeted
viromes,
especially
when
applied
environments.
Overall,
suggest
studies
interested
assessing
should
consider
using
approaches.
However,
given
constraints
virome
sampling,
may
serve
sample
understanding
they
will
preferentially
dominant
FEMS Microbiology Ecology,
Год журнала:
2023,
Номер
99(8)
Опубликована: Июль 7, 2023
Abstract
Bee–fungus
associations
are
common,
and
while
most
studies
focus
on
entomopathogens,
emerging
evidence
suggests
that
bees
associate
with
a
variety
of
symbiotic
fungi
can
influence
bee
behavior
health.
Here,
we
review
nonpathogenic
fungal
taxa
associated
different
species
bee-related
habitats.
We
synthesize
results
examining
effects
behavior,
development,
survival,
fitness.
find
communities
differ
across
habitats,
some
groups
restricted
mostly
to
flowers
(Metschnikowia),
others
present
almost
exclusively
in
stored
provisions
(Zygosaccharomyces).
Starmerella
yeasts
found
multiple
habitats
association
many
species.
Bee
widely
the
abundance
identity
hosted.
Functional
suggest
affect
foraging,
pathogen
interactions,
though
few
have
been
examined
this
context.
Rarely,
obligately
beneficial
symbionts
bees,
whereas
facultative
associates
unknown
or
ecologically
contextual
effects.
Fungicides
reduce
alter
potentially
disrupting
bee–fungi
associations.
recommend
future
study
non-honeybee
examine
life
stages
document
composition,
abundance,
mechanistic
bees.
Abstract
Rising
temperatures
negatively
affect
bumble
bee
fitness
directly
through
physiological
impacts
and
indirectly
by
disrupting
mutualistic
interactions
between
bees
other
organisms,
which
are
crucial
in
determining
species‐specific
responses
to
climate
change.
Gut
microbial
symbionts,
key
regulators
of
host
nutrition
health,
may
be
the
Achilles'
heel
thermal
insects.
They
not
only
modulate
biotic
with
plants
pathogens
but
also
exhibit
varying
sensitivity
themselves.
Understanding
how
environmental
changes
disrupt
microbiome
communities
is
a
first
step
determine
potential
consequences
for
population
responses.
We
analyzed
gut
bacterial
six
species
inhabiting
different
climatic
niches
along
an
elevational
gradient
German
Alps
using
16S
ribosomal
DNA
amplicon
sequencing.
investigated
whether
inter‐
intraspecific
differences
can
linked
species'
niches,
differ
temperature,
flower
resource
composition,
likely
pathogen
pressure.
A
reciprocal
translocation
experiment
distinct
regions
tested
Bombus
terrestris
lucorum
change
short‐term
when
exposed
new
environments.
Finally,
we
these
heat
cold
wave
scenarios
within
chambers
disentangle
pure
temperature‐driven
effects
on
from
effects.
Interspecific
variation
composition
exceeded
variation.
Species
levels
stability,
where
stability
defined
as
within‐group
variance:
lower
indicated
greater
variance,
predominantly
observed
higher
elevations.
Transplanted
showed
subtle
adjustments,
marked
increase
Lactobacillaceae
upon
exposure
warmer
regions;
however,
microbiomes
did
under
laboratory
temperature
scenarios.
conclude
that
could
lead
For
example,
less
stable
elevations
might
indicate
increased
pathogens.
Short‐term
following
relatively
microbiomes,
such
B.
,
rapidly
integrate
bacteria,
their
capacity
cope
environments
Molecular Ecology,
Год журнала:
2022,
Номер
32(3), С. 724 - 740
Опубликована: Ноя. 5, 2022
Abstract
How
a
host's
microbiome
changes
over
its
lifespan
can
influence
development
and
ageing.
As
these
temporal
patterns
have
only
been
described
in
detail
for
handful
of
hosts,
an
important
next
step
is
to
compare
succession
more
broadly
investigate
why
it
varies.
Here
we
characterize
the
dynamics
stability
bumble
bee
worker
gut
microbiome.
Bumble
bees
simple
host‐specific
microbiomes,
their
microbial
may
health
pollination
services.
We
used
16S
rRNA
gene
sequencing,
quantitative
PCR
metagenomics
microbiomes
Bombus
impatiens
workers.
also
sequenced
transcriptomes
examine
host
factors
that
control
At
community
level,
assembly
highly
predictable
similar
primary
observed
human
gut.
However,
at
strain
partitioning
bacterial
variants
among
colonies
suggests
stochastic
colonization
events
those
flies
nematodes.
find
strong
differences
symbiont
species,
suggesting
ecological
members
persistence.
Finally,
show
both
transcriptome—including
expression
key
immunity
genes—stabilize,
as
opposed
senesce,
with
age.
suggest
social
groups
such
bees,
maintenance
contribute
inclusive
fitness,
thus
remain
under
selection
even
old
Our
findings
provide
foundation
exploring
mechanisms
functional
outcomes
succession.
Social
bees
are
an
important
model
for
the
ecology
and
evolution
of
gut
microbiomes.
These
harbor
ancient,
specific,
beneficial
microbiomes
crucial
pollinators.
However,
most
research
has
concentrated
on
managed
honeybees
bumblebees
in
temperate
zone.
Here
we
used
16S
rRNA
gene
sequencing
to
characterize
wild
neotropical
bumblebee
communities
from
Colombia.
We
also
analyzed
drivers
microbiome
structure
across
our
data
previously
published
bumblebees.
Our
results
show
that
lineages
not
only
retained
their
ancient
bacterial
symbionts
during
dispersal
North
America
but
prone
major
disruption,
a
shift
is
strongly
associated
with
parasite
infection.
Finally,
found
much
more
structured
by
host
phylogeny
than
geography,
despite
very
different
environmental
conditions
plant
two
regions.
Applied and Environmental Microbiology,
Год журнала:
2024,
Номер
90(2)
Опубликована: Янв. 19, 2024
Social
bees
are
frequently
exposed
to
pesticides
when
foraging
on
nectar
and
pollen.
Recent
research
has
shown
that
pesticide
exposure
not
only
impacts
social
bee
host
health
but
can
also
alter
the
community
structure
of
gut
microbiotas.
However,
most
pesticide-bee
microbiota
interactions
been
conducted
in
honey
bees;
bumble
bees,
native
North
American
pollinators,
have
received
less
attention
and,
due
differences
their
ecology,
may
be
certain
for
shorter
durations
than
bees.
Here,
we
examine
how
fungicide
chlorothalonil
a
short,
field-realistic
duration
alters
fecal
microbiotas
(used
as
proxy
microbiotas)
performance.
We
expose
small
groups
ISME Communications,
Год журнала:
2024,
Номер
4(1)
Опубликована: Янв. 1, 2024
Abstract
Insects
typically
acquire
their
beneficial
microbes
early
in
development.
Endosymbionts
housed
intracellularly
are
commonly
integrated
during
oogenesis
or
embryogenesis,
whereas
extracellular
only
known
to
be
acquired
after
hatching
by
immature
instars
such
as
larvae
nymphs.
Here,
however,
we
report
on
an
symbiont
that
colonizes
its
host
embryo
Tortoise
beetles
(Chrysomelidae:
Cassidinae)
digestive
bacterial
Stammera
extracellularly
within
foregut
symbiotic
organs
and
ovary-associated
glands
ensure
vertical
transmission.
We
outline
the
initial
stages
of
colonization
observe
although
develop
3
days
prior
larval
emergence,
they
remain
empty
until
final
24
h
Infection
occurs
timeframe
hatching.
By
experimentally
manipulating
availability
embryos
egg,
describe
a
12-h
developmental
window
governing
Stammera.
Symbiotic
form
normally
aposymbiotic
larvae,
demonstrating
these
Stammera-bearing
structures
autonomously.
In
adults,
already
colonized
following
metamorphosis
stable
population
facilitate
folivory.
The
glands,
initially
lack
Symbiont
abundance
subsequently
increases
transmission
organs,
thereby
ensuring
sufficient
titers
at
onset
oviposition
~29
metamorphosis.
Collectively,
our
findings
reveal
precedes
where
proliferation
is
eventually
decoupled
adult
match
nutritional
reproductive
requirements
host.
Honeybees
and
bumblebees
play
a
crucial
role
as
essential
pollinators.
The
special
gut
microbiome
of
social
bees
is
key
factor
in
determining
the
overall
fitness
health
host.
Although
harbor
relatively
simple
microbial
communities
at
genus
level,
recent
studies
have
unveiled
significant
genetic
divergence
variations
gene
content
within
each
bacterial
genus.
However,
comprehensive
refined
genomics-based
taxonomic
database
specific
to
bee
microbiomes
remains
lacking.
Here,
we
first
provided
an
overview
current
knowledge
on
distribution
function
bacteria,
well
factors
that
influence
population
dynamics.
We
then
consolidated
all
available
genomes
bacteria
species-level
taxonomy,
by
constructing
maximum-likelihood
core
genome
phylogeny
calculating
genome-wide
pairwise
average
nucleotide
identity.
On
basis
species
constructed
curated
genomic
reference
database,
named
microbe
sequence
(BGM-GDb).
To
evaluate
species-profiling
performance
BGM-GDb,
retrieved
series
metagenomic
data
inferred
composition
using
intra-species
diversity
analysis
system
(MIDAS),
compared
results
with
those
obtained
from
prebuilt
MIDAS
database.
found
default
BGM-GDb
excelled
aligned
read
counts
richness.
Overall,
this
high-resolution
precise
will
facilitate
research
understanding
community
structure
bees.