Plant and pathogen genomics: essential approaches for stem rust resistance gene stacks in wheat DOI Creative Commons
Matthias Jost, Megan A. Outram, Katherine E. Dibley

и другие.

Frontiers in Plant Science, Год журнала: 2023, Номер 14

Опубликована: Сен. 1, 2023

The deployment of disease resistance genes is currently the most economical and environmentally sustainable method crop protection. However, can rapidly break down because constant pathogen evolution, particularly when they are deployed singularly. Polygenic is, therefore, considered durable, but combining maintaining these by breeding a laborious process as effective usually unlinked. polygenic with single-locus inheritance promising innovation that overcomes difficulties while enhancing durability. Because major advances in genomic technologies, increasing numbers plant have been cloned, enabling development transgene stacks (RTGSs) encode multiple all located at single genetic locus. Gene encoding five stem rust now developed transgenic wheat offer both simplicity potential similar resources phytopathogens has advanced effector gene isolation and, some instances, enabled functional validation individual RTGS. Here, pathosystem used an illustrative example how host instrumental RTGS, which strategy applicable to many other agricultural species.

Язык: Английский

Plant pangenomes for crop improvement, biodiversity and evolution DOI
Mona Schreiber, Murukarthick Jayakodi, Nils Stein

и другие.

Nature Reviews Genetics, Год журнала: 2024, Номер 25(8), С. 563 - 577

Опубликована: Фев. 20, 2024

Язык: Английский

Процитировано

32

Variation in TaSPL6-D confers salinity tolerance in bread wheat by activating TaHKT1;5-D while preserving yield-related traits DOI
Meng Wang, Jie Cheng, Jianhui Wu

и другие.

Nature Genetics, Год журнала: 2024, Номер 56(6), С. 1257 - 1269

Опубликована: Май 27, 2024

Язык: Английский

Процитировано

22

Origin and evolution of the bread wheat D genome DOI Creative Commons
Emile Cavalet-Giorsa, Andrea González-Muñoz, Naveenkumar Athiyannan

и другие.

Nature, Год журнала: 2024, Номер 633(8031), С. 848 - 855

Опубликована: Авг. 14, 2024

Bread wheat (Triticum aestivum) is a globally dominant crop and major source of calories proteins for the human diet. Compared with its wild ancestors, modern bread shows lower genetic diversity, caused by polyploidisation, domestication breeding bottlenecks

Язык: Английский

Процитировано

18

Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement DOI
Albert W. Schulthess, Sandip M. Kale, Fang Liu

и другие.

Nature Genetics, Год журнала: 2022, Номер 54(10), С. 1544 - 1552

Опубликована: Окт. 1, 2022

Язык: Английский

Процитировано

62

A catalogue of resistance gene homologs and a chromosome‐scale reference sequence support resistance gene mapping in winter wheat DOI Creative Commons
Sandip M. Kale, Albert W. Schulthess, Sudharsan Padmarasu

и другие.

Plant Biotechnology Journal, Год журнала: 2022, Номер 20(9), С. 1730 - 1742

Опубликована: Май 14, 2022

A resistance gene atlas is an integral component of the breeder's arsenal in fight against evolving pathogens. Thanks to high-throughput sequencing, catalogues genes can be assembled even crop species with large and polyploid genomes. Here, we report on capture sequencing assembly homologs a diversity panel 907 winter wheat genotypes comprising ex situ genebank accessions current elite cultivars. In addition, use accurate long-read chromosome conformation construct chromosome-scale genome sequence cv. Attraktion, variety representative European wheat. We illustrate value our resource for breeders geneticists by (i) comparing complements plant genetic resources varieties (ii) conducting genome-wide associations scans (GWAS) fungal diseases yellow rust leaf using reference-based reference-free GWAS approaches. The content under peaks was scrutinized Attraktion.

Язык: Английский

Процитировано

48

Genome resources for the elite bread wheat cultivar Aikang 58 and mining of elite homeologous haplotypes for accelerating wheat improvement DOI Creative Commons
Jizeng Jia,

Guangyao Zhao,

Danping Li

и другие.

Molecular Plant, Год журнала: 2023, Номер 16(12), С. 1893 - 1910

Опубликована: Окт. 28, 2023

Язык: Английский

Процитировано

29

Pan-genome bridges wheat structural variations with habitat and breeding DOI
Chengzhi Jiao, Xiaoming Xie,

Chenyang Hao

и другие.

Nature, Год журнала: 2024, Номер unknown

Опубликована: Ноя. 27, 2024

Язык: Английский

Процитировано

16

FIND-IT: Accelerated trait development for a green evolution DOI Creative Commons
Søren Knudsen, Toni Wendt, Christoph Dockter

и другие.

Science Advances, Год журнала: 2022, Номер 8(34)

Опубликована: Авг. 24, 2022

Improved agricultural and industrial production organisms are required to meet the future global food demands minimize effects of climate change. A new resource for crop microbe improvement, designated FIND-IT (Fast Identification Nucleotide variants by droplet DigITal PCR), provides ultrafast identification isolation predetermined, targeted genetic in a screening cycle less than 10 days. Using large-scale sample pooling combination with digital PCR (ddPCR) greatly increases size low–mutation density screenable variant libraries probability identifying interest. The method is validated totaling 500,000 barley ( Hordeum vulgare ) individuals isolating more 125 gene knockout lines miRNA or promoter enabling functional analysis. directly applicable elite breeding pipelines time-consuming technical steps accelerate evolution germplasm.

Язык: Английский

Процитировано

30

Two functional CC‐NBS‐LRR proteins from rye chromosome 6RS confer differential age‐related powdery mildew resistance to wheat DOI Creative Commons
Guohao Han, Liu Hong, Shanying Zhu

и другие.

Plant Biotechnology Journal, Год журнала: 2023, Номер 22(1), С. 66 - 81

Опубликована: Авг. 24, 2023

Summary Rye ( Secale cereale ), a valuable relative of wheat, contains abundant powdery mildew resistance Pm ) genes. Using physical mapping, transcriptome sequencing, barley stripe mosaic virus‐induced gene silencing, ethyl methane sulfonate mutagenesis, and stable transformation, we isolated validated two coiled‐coil, nucleotide‐binding site leucine‐rich repeat (CC‐NBS‐LRR) alleles, PmTR1 PmTR3 , located on rye chromosome 6RS from different triticale lines. confers age‐related starting the three‐leaf stage, whereas its allele, typical all‐stage resistance, which may be associated with their differential expression patterns. Overexpression in Nicotiana benthamiana showed that CC, CC‐NBS, CC‐LRR fragments PMTR1 induce cell death, PMTR3 CC full‐length perform this function. Luciferase complementation imaging pull‐down assays revealed distinct interaction activities between NBS fragments. Our study elucidates novel rye‐derived genes derivative germplasm resources provides insights into mechanism can aid improvement against wheat mildew.

Язык: Английский

Процитировано

18

Genetic Dissection of Triple Rust Resistance (Leaf, Yellow, and Stem Rust) in Kenyan Wheat Cultivar, “Kasuku” DOI Creative Commons
Naeela Qureshi, Ravi P. Singh, Sridhar Bhavani

и другие.

Plants, Год журнала: 2025, Номер 14(7), С. 1007 - 1007

Опубликована: Март 23, 2025

Climate change is driving the spread of transboundary wheat diseases, necessitating development resilient varieties for sustainable agriculture. Wheat rusts, including leaf rust (LR), yellow (YR), and stem (SR), remain among most economically significant causing substantial yield losses worldwide. Enhancing genetic diversity by identifying deploying resistance genes crucial durable in breeding programs. This study aimed to identify quantitative trait loci (QTL) associated with CIMMYT line Kasuku, released Kenya 2018. A recombinant inbred (RIL) population (181 lines) derived from Kasuku (triple rust-resistant) Apav#1 rust-susceptible) was evaluated under artificial LR YR epidemics Mexico SR Kenya. QTL mapping using genotyping-by-sequencing (DArTSeq) phenotypic data identified four major loci: QLrYrSr.cim-1BL (Lr46/Yr29/Sr58) on 1BL, conferring LR, YR, SR; QLrYr.cim-2AS (Yr17/Lr37) 2AS, providing resistance; QLrYr.cim-3AL 3AL; QLrYrSr.cim-6AL 6AL, representing novel multiple resistances. Additionally, minor were also identified: (QLr.cim-2DS 2DS, QLr.cim-6DS 6DS), (QYrKen.cim-3DS 3DS, QYrKen.cim-6BS 6BS), (QSr.cim-2BS 2BS, QSr.cim-5AL 5AL, QSr.cim-6AS 6AS). RILs carrying these combinations exhibited reductions severity. Flanking markers are being used develop Kompetitive Allele-Specific PCR (KASP) fine marker-assisted selection (MAS). These findings contribute strategic deployment programs, facilitating pathogens.

Язык: Английский

Процитировано

1