Genome-wide circadian gating of a cold temperature response in bread wheat DOI Creative Commons
Calum A. Graham, Pirita Paajanen, Keith J. Edwards

и другие.

PLoS Genetics, Год журнала: 2023, Номер 19(9), С. e1010947 - e1010947

Опубликована: Сен. 18, 2023

Circadian rhythms coordinate the responses of organisms with their daily fluctuating environments, by establishing a temporal program gene expression. This schedules aspects metabolism, physiology, development and behaviour according to time day. regulation in plants is extremely pervasive, important because it underpins both productivity seasonal reproduction. extends control environmental through regulatory process known as circadian gating. gating whereby clock regulates response an cue, such that magnitude identical cue varies day cue. Here, we show there genome-wide cold temperatures plants. By using bread wheat experimental model, establish crucial programs expression underlie crop major socioeconomic importance. Furthermore, identify temperature are distributed unevenly across three subgenomes, which might reflect geographical origins ancestors modern wheat.

Язык: Английский

Transcriptional regulatory network of plant cold-stress responses DOI Creative Commons
Satoshi Kidokoro, Kazuo Shinozaki, Kazuko Yamaguchi‐Shinozaki

и другие.

Trends in Plant Science, Год журнала: 2022, Номер 27(9), С. 922 - 935

Опубликована: Фев. 21, 2022

Язык: Английский

Процитировано

275
Emerging satellite observations for diurnal cycling of ecosystem processes DOI
Jingfeng Xiao, Joshua B. Fisher, Hirofumi Hashimoto

и другие.

Nature Plants, Год журнала: 2021, Номер 7(7), С. 877 - 887

Опубликована: Июль 1, 2021

Язык: Английский

Процитировано

135
Predictive genetic circuit design for phenotype reprogramming in plants DOI Creative Commons
Ci Kong, Yin Yang, Tiancong Qi

и другие.

Nature Communications, Год журнала: 2025, Номер 16(1)

Опубликована: Янв. 16, 2025

Plants, with intricate molecular networks for environmental adaptation, offer groundbreaking potential reprogramming predictive genetic circuits. However, realizing this goal is challenging due to the long cultivation cycle of plants, as well lack reproducible, quantitative methods and well-characterized parts. Here, we establish a rapid (~10 days), quantitative, framework in plants. A group orthogonal sensors, modular synthetic promoters, NOT gates are constructed quantitatively characterized. model developed predict designed circuits' behavior accurately. Our versatile robust framework, validated by constructing 21 two-input circuits high prediction accuracy (R2 = 0.81), enables multi-state phenotype control both Arabidopsis thaliana Nicotiana benthamiana response chemical inducers. study achieves predictable design application offering valuable tools engineering plant traits biotechnology agriculture. The gene plants has been lagging behind other organisms. authors report designing reprograming expression hypersensitive response.

Язык: Английский

Процитировано

3
Enhancing crop diversity for food security in the face of climate uncertainty DOI
Agustín Zsögön, Lázaro Eustáquio Pereira Peres, Yingjie Xiao

и другие.

The Plant Journal, Год журнала: 2021, Номер 109(2), С. 402 - 414

Опубликована: Дек. 9, 2021

Global agriculture is dominated by a handful of species that currently supply huge proportion our food and feed. It additionally faces the massive challenge providing for 10 billion people 2050, despite increasing environmental deterioration. One way to better plan production in face current continuing climate change understand how domestication these crops included their adaptation environments were highly distinct from those centre origin. There are many prominent examples this, including development temperate Zea mays (maize) alteration day-length requirements Solanum tuberosum (potato). Despite pre-eminence some 15 crops, more than 50 000 edible, with 7000 considered semi-cultivated. Opportunities afforded next-generation sequencing technologies alongside other methods, metabolomics high-throughput phenotyping, starting contribute characterization species. Moreover, first de novo have appeared, whereby key target genes modified wild order confer predictable traits agronomic value. Here, we review scale challenge, drawing extensively on past suggest informed strategies upon which breeding future climate-resilient can be based.

Язык: Английский

Процитировано

90
Underwater CAM photosynthesis elucidated by Isoetes genome DOI Creative Commons
David Wickell, Li‐Yaung Kuo,

Hsiao‐Pei Yang

и другие.

Nature Communications, Год журнала: 2021, Номер 12(1)

Опубликована: Ноя. 3, 2021

To conserve water in arid environments, numerous plant lineages have independently evolved Crassulacean Acid Metabolism (CAM). Interestingly, Isoetes, an aquatic lycophyte, can also perform CAM as adaptation to low CO

Язык: Английский

Процитировано

86
Circadian clock in plants: Linking timing to fitness DOI Open Access
Xiaodong Xu, Yuan Li, Xin Yang

и другие.

Journal of Integrative Plant Biology, Год журнала: 2022, Номер 64(4), С. 792 - 811

Опубликована: Янв. 28, 2022

Endogenous circadian clock integrates cyclic signals of environment and daily seasonal behaviors organisms to achieve spatiotemporal synchronization, which greatly improves genetic diversity fitness species. This review addresses recent studies on the plant system in field chronobiology, covering topics molecular mechanisms, internal external Zeitgebers, hierarchical regulation physiological outputs. The architecture involves autoregulatory transcriptional feedback loops, post-translational modifications core oscillators, epigenetic DNA histones. Here, light, temperature, humidity, elemental nutrients are summarized illustrate sensitivity timing cues. In addition, runs cell-autonomously, driving independent rhythms various tissues. oscillators responds each other with biochemical factors including calcium ions, mineral nutrients, photosynthetic products, hormones. We describe components sequentially expressed during a 24-h day that regulate rhythmic growth, aging, immune response, resistance biotic abiotic stresses. Notably, more data have suggested links chrono-culture key agronomic traits crops.

Язык: Английский

Процитировано

56
The circadian clock ticks in plant stress responses DOI Creative Commons
Xiaodong Xu, Yuan Li, Qiguang Xie

и другие.

Stress Biology, Год журнала: 2022, Номер 2(1)

Опубликована: Март 1, 2022

Abstract The circadian clock, a time-keeping mechanism, drives nearly 24-h self-sustaining rhythms at the physiological, cellular, and molecular levels, keeping them synchronized with cyclic changes of environmental signals. plant clock is sensitive to external internal stress signals that act as timing cues influence through input pathways system. In order cope stresses, many core oscillators are involved in defense while maintaining daily growth various ways. Recent studies have shown hierarchical multi-oscillator network orchestrates rhythmic accumulation gene transcripts, alternative splicing mRNA precursors, modification turnover proteins, subcellular localization, stimuli-induced phase separation, long-distance transport proteins. This review summarizes essential role response stresses Arabidopsis thaliana crops, including seasonal abiotic (low or high temperature, drought, salinity, nutrition deficiency) biotic (pathogens herbivorous insects). By integrating mechanisms, resistance, we provide temporal perspective for scientists better understand adaptation breed high-quality crop germplasm agricultural production.

Язык: Английский

Процитировано

41
Rice CIRCADIAN CLOCK ASSOCIATED 1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance DOI Open Access
Hua Wei, Hang Xu, Su Chen

и другие.

PLANT PHYSIOLOGY, Год журнала: 2022, Номер 190(2), С. 1057 - 1073

Опубликована: Апрель 29, 2022

The circadian clock facilitates the survival and reproduction of crop plants under harsh environmental conditions such as drought osmotic salinity stresses, mainly by reprogramming endogenous transcriptional landscape. Nevertheless, genome-wide roles core components in rice (Oryza sativa L.) abiotic stress tolerance are largely uncharacterized. Here, we report that CIRCADIAN CLOCK ASSOCIATED1 (OsCCA1), a vital component rice, is required for to salinity, osmotic, stresses. DNA affinity purification sequencing coupled with transcriptome analysis identified 692 direct target genes OsCCA1. Among them, involved abscisic acid (ABA) signaling, including group A protein phosphatase 2C basic region leucine zipper 46 (OsbZIP46), were substantially enriched. Moreover, OsCCA1 could directly bind promoters OsPP108 OsbZIP46 activate their expression. Consistently, oscca1 null mutants generated via genome editing displayed enhanced sensitivities ABA signaling. Together, our findings illustrate confers multiple likely orchestrating which links signaling rice.

Язык: Английский

Процитировано

41
BioClocks UK: driving robust cycles of discovery to impact DOI Creative Commons
Hannah Rees, Nina M. Rzechorzek,

Rebecca Hughes

и другие.

Philosophical Transactions of the Royal Society B Biological Sciences, Год журнала: 2025, Номер 380(1918)

Опубликована: Янв. 23, 2025

Chronobiology is a multidisciplinary field that extends across the tree of life, transcends all scales biological organization, and has huge translational potential. For UK to harness opportunities presented within applied chronobiology, we need build our network outwards reach stakeholders can directly benefit from discoveries. In this article, discuss importance rhythms health, society, economy environment, with particular focus on circadian rhythms. We subsequently introduce vision objectives BioClocks UK, newly formed research network, whose mission stimulate researcher interactions sustain discovery-impact cycles between chronobiologists, wider communities multiple industry sectors. This article part Theo Murphy meeting issue ‘Circadian in infection immunity’.

Язык: Английский

Процитировано

1
Circadian gating: concepts, processes, and opportunities DOI
Pirita Paajanen, Jacqueline M. Kimmey, Antony N. Dodd

и другие.

Philosophical Transactions of the Royal Society B Biological Sciences, Год журнала: 2025, Номер 380(1918)

Опубликована: Янв. 23, 2025

Circadian clocks provide a biological measure of time that coordinates metabolism, physiology and behaviour with 24 h cycles in the environment. systems have variety characteristic properties, such as entrainment to environmental cues, self-sustaining rhythm about temperature compensation circadian rhythm. In this perspective, we discuss process gating, which refers restriction event particular times day by clock. We introduce principles processes associated gating organisms, including some mechanisms. highlight socioeconomic opportunities presented investigation using selected examples from medicine agricultural crop production illustrate its importance. This article is part Theo Murphy meeting issue ‘Circadian rhythms infection immunity’.

Язык: Английский

Процитировано

1