Key Advances in the New Era of Genomics-Assisted Disease Resistance Improvement of Brassica Species DOI
Junrey C. Amas, William J. W. Thomas, Yueqi Zhang

и другие.

Phytopathology, Год журнала: 2022, Номер 113(5), С. 771 - 785

Опубликована: Ноя. 3, 2022

Disease resistance improvement remains a major focus in breeding programs as diseases continue to devastate Brassica production systems due intensive cultivation and climate change. Genomics has paved the way understand complex genomes of Brassicas, which been pivotal dissection genetic underpinnings agronomic traits driving development superior cultivars. The new era genomics-assisted disease marked by high-quality genome references, accelerating identification genes controlling both qualitative (major) gene quantitative resistance. This facilitates molecular markers for marker assisted selection enables editing approaches targeted manipulation enhance value traits. review summarizes key advances genomic resources species, focusing on improved based long-read sequencing technologies pangenome assemblies. is further supported pathogen genomics, have resulted discovery pathogenicity factors, complementing mining host. Recognizing co-evolutionary arms race between host pathogen, it critical identify novel using crop wild relatives synthetic cultivars or through via genome-editing sustain Integrating these with techniques phenotyping advanced data analysis platforms will make species more efficient responsive current future demands.

Язык: Английский

Peptide hormones in plants DOI Creative Commons
Zhenbiao Zhang, Huibin Han,

Junxiang Zhao

и другие.

Molecular Horticulture, Год журнала: 2025, Номер 5(1)

Опубликована: Янв. 23, 2025

Abstract Peptide hormones are defined as small secreted polypeptide-based intercellular communication signal molecules. Such peptide encoded by nuclear genes, and often go through proteolytic processing of preproproteins post-translational modifications. Most out the cell to interact with membrane-associated receptors in neighboring cells, subsequently activate transductions, leading changes gene expression cellular responses. Since discovery first plant hormone, systemin, tomato 1991, putative have continuously been identified different species, showing their importance both short- long-range transductions. The roles implicated in, but not limited to, processes such self-incompatibility, pollination, fertilization, embryogenesis, endosperm development, stem regulation, architecture, tissue differentiation, organogenesis, dehiscence, senescence, plant-pathogen plant-insect interactions, stress This article, collectively written researchers this field, aims provide a general overview for discoveries, functions, chemical natures, transcriptional regulations, modifications plants. We also updated recent discoveries receptor kinases underlying hormone sensing down-stream pathways. Future prospective challenges will be discussed at end article.

Язык: Английский

Процитировано

2
From Gene to Transcript and Peptide: A Deep Overview on Non-Specific Lipid Transfer Proteins (nsLTPs) DOI Creative Commons
Carlos André dos Santos-Silva, José Ribamar Costa Ferreira‐Neto, Vinícius Costa Amador

и другие.

Antibiotics, Год журнала: 2023, Номер 12(5), С. 939 - 939

Опубликована: Май 21, 2023

Non-specific lipid transfer proteins (nsLTPs) stand out among plant-specific peptide superfamilies due to their multifaceted roles in plant molecular physiology and development, including protective functions against pathogens. These antimicrobial agents have demonstrated remarkable efficacy bacterial fungal The discovery of plant-originated, cysteine-rich peptides such as nsLTPs has paved the way for exploring mentioned organisms potential biofactories synthesizing compounds. Recently, been focus a plethora research reviews, providing functional overview activity. present work compiles relevant information on nsLTP omics evolution, it adds meta-analysis nsLTPs, including: (1) genome-wide mining 12 genomes not studied before; (2) latest common ancestor analysis (LCA) expansion mechanisms; (3) structural proteomics, scrutinizing nsLTPs’ three-dimensional structure/physicochemical characteristics context classification; (4) broad spatiotemporal transcriptional using soybean study case. Combining critical review with original results, we aim integrate high-quality single source clarify unexplored aspects this important gene/peptide family.

Язык: Английский

Процитировано

8
Pathogenesis-related proteins and plant defense response DOI

Ikram Zribi,

Mouna Ghorbel, Faïçal Brini

и другие.

Elsevier eBooks, Год журнала: 2024, Номер unknown, С. 53 - 97

Опубликована: Янв. 1, 2024

Язык: Английский

Процитировано

2
Longer Duration of Active Oil Biosynthesis during Seed Development Is Crucial for High Oil Yield—Lessons from Genome-Wide In Silico Mining and RNA-Seq Validation in Sesame DOI Creative Commons
Bhagwat Nawade, Ajay Kumar, Rasna Maurya

и другие.

Plants, Год журнала: 2022, Номер 11(21), С. 2980 - 2980

Опубликована: Ноя. 4, 2022

Sesame, one of the ancient oil crops, is an important oilseed due to its nutritionally rich seeds with high protein content. Genomic scale information for sesame has become available in public databases recent years. The genes and their families involved biosynthesis are less studied than other crops. Therefore, we retrieved a total 69 translated amino acid sequences, associated gene linked biosynthetic pathway. Genome-wide silico mining helped identify key regulatory biosynthesis, though findings require functional validation. Comparing sequences SiSAD (stearoyl-acyl carrier (ACP)-desaturase) coding known SADs two family members that may be palmitoyl-ACP-specific. Based on homology lysophosphatidic acyltransferase (LPAAT) uncharacterized been identified as SiLPAAT1. Identified content were also validated using publicly transcriptome datasets genotypes contrasting at different developmental stages. Our study provides evidence longer duration active crucial accumulation during seed development. This underscores importance early onset developing seeds. Up-regulating, development, should help increase yields.

Язык: Английский

Процитировано

9
Systematic and functional analysis of non-specific lipid transfer protein family genes in sugarcane under Xanthomonas albilineans infection and salicylic acid treatment DOI Creative Commons
Juan Li, Jianying Zhao, Yang Shi

и другие.

Frontiers in Plant Science, Год журнала: 2022, Номер 13

Опубликована: Окт. 5, 2022

Plant non-specific lipid transfer proteins (nsLTPs) are small basic that play a significant regulatory role in wide range of physiological processes. To date, no genome-wide survey and expression analysis this gene family sugarcane has been performed. In study we identified the nsLTP Saccharum spontaneum carried out profiling nsLTPs two cultivars (Saccharum spp.) have different resistance to leaf scald caused by Xanthomonas albilineans (Xa) infection. The effect stress related exogenous salicylic acid (SA) treatment was also examined. At level, S. AP85-441 had 71 SsnsLTP genes including 66 alleles. Tandem (9 pairs) segmental (36 duplication events contributed expansion. Five were predicted interact with five other proteins. Expression ShnsLTPI.8/10/Gb.1 significantly upregulated LCP85-384 (resistant cultivar), but downregulated ROC20 (susceptible suggesting these positive response Xa Conversely, ShnsLTPGa.4/Ge.3 appears act as negative regulator majority (16/17) tested positively induced 72 h after SA treatment. both cultivars, particularly LCP85-384, ShnsLTPIV.3/VIII.1 at all time-points, might regulators under stress. Meanwhile, showed ShnsLTPGb.1 expression, indicating its potential responses. Notably, contrasting effects, regulation infection Together, our results provide valuable information for elucidating function ShnsLTP members stressors novel sources development tolerant environmental stimuli.

Язык: Английский

Процитировано

7
Key Advances in the New Era of Genomics-Assisted Disease Resistance Improvement of Brassica Species DOI
Junrey C. Amas, William J. W. Thomas, Yueqi Zhang

и другие.

Phytopathology, Год журнала: 2022, Номер 113(5), С. 771 - 785

Опубликована: Ноя. 3, 2022

Disease resistance improvement remains a major focus in breeding programs as diseases continue to devastate Brassica production systems due intensive cultivation and climate change. Genomics has paved the way understand complex genomes of Brassicas, which been pivotal dissection genetic underpinnings agronomic traits driving development superior cultivars. The new era genomics-assisted disease marked by high-quality genome references, accelerating identification genes controlling both qualitative (major) gene quantitative resistance. This facilitates molecular markers for marker assisted selection enables editing approaches targeted manipulation enhance value traits. review summarizes key advances genomic resources species, focusing on improved based long-read sequencing technologies pangenome assemblies. is further supported pathogen genomics, have resulted discovery pathogenicity factors, complementing mining host. Recognizing co-evolutionary arms race between host pathogen, it critical identify novel using crop wild relatives synthetic cultivars or through via genome-editing sustain Integrating these with techniques phenotyping advanced data analysis platforms will make species more efficient responsive current future demands.

Язык: Английский

Процитировано

4