Linking Plant Secondary Metabolites and Plant Microbiomes: A Review

Frontiers in Plant Science, Год журнала: 2021, Номер 12

Опубликована: Март 2, 2021

Plant secondary metabolites (PSMs) play many roles including defense against pathogens, pests, and herbivores; response to environmental stresses, mediating organismal interactions. Similarly, plant microbiomes participate in of the above-mentioned processes directly or indirectly by regulating metabolism. Studies have shown that plants can influence their microbiome secreting various and, turn, may also impact metabolome host plant. However, not much is known about communications between interacting partners phenotypic changes. In this article, we review patterns potential underlying mechanisms interactions PSMs microbiomes. We describe recent developments analytical approaches methods field. The applications these new increased our understanding relationships Though current studies primarily focused on model organisms, results obtained so far should help future agriculturally important facilitate development manipulate PSMs–microbiome with predictive outcomes for sustainable crop productions.

Язык: Английский

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A single bacterial genus maintains root growth in a complex microbiome

Nature, Год журнала: 2020, Номер 587(7832), С. 103 - 108

Опубликована: Сен. 30, 2020

Язык: Английский

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The Plant Microbiome: From Ecology to Reductionism and Beyond

Annual Review of Microbiology, Год журнала: 2020, Номер 74(1), С. 81 - 100

Опубликована: Июнь 12, 2020

Methodological advances over the past two decades have propelled plant microbiome research, allowing field to comprehensively test ideas proposed a century ago and generate many new hypotheses. Studying distribution of microbial taxa genes across habitats has revealed importance various ecological evolutionary forces shaping microbiota. In particular, selection imposed by strongly shapes diversity composition microbiota leads adaptation associated with navigating immune system utilizing plant-derived resources. Reductionist approaches demonstrated that interaction between immunity is, in fact, bidirectional plants, microbiota, environment shape complex chemical dialogue collectively orchestrates plantmicrobiome. The next stage research will require integration reductionist establish general understanding assembly function both natural managed environments.

Язык: Английский

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Interactions between plants and soil shaping the root microbiome under abiotic stress

Biochemical Journal, Год журнала: 2019, Номер 476(19), С. 2705 - 2724

Опубликована: Окт. 11, 2019

Abstract Plants growing in soil develop close associations with microorganisms, which inhabit the areas around, on, and inside their roots. These microbial communities associated genes — collectively termed root microbiome are diverse have been shown to play an important role conferring abiotic stress tolerance plant hosts. In light of concerns over threat water nutrient facing terrestrial ecosystems, especially those used for agricultural production, increased emphasis has placed on understanding how conditions influence composition functioning ultimate consequences health. However, under will not only reflect shifts greater bulk community from plants recruit but also responses stress, include changes exudate profiles morphology. Exploring relative contributions these direct plant-mediated effects focus many studies recent years. Here, we review impacts affecting specifically flooding, drought, nitrogen phosphorus availability, that interact ultimately shape microbiome. We conclude a perspective outlining possible directions future research needed advance our complex molecular biochemical interactions between soil, plants, microbes determine stress.

Язык: Английский

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Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

Nature Ecology & Evolution, Год журнала: 2019, Номер 4(1), С. 122 - 131

Опубликована: Дек. 23, 2019

Язык: Английский

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Enabling sustainable agriculture through understanding and enhancement of microbiomes

New Phytologist, Год журнала: 2021, Номер 230(6), С. 2129 - 2147

Опубликована: Март 4, 2021

Summary Harnessing plant‐associated microbiomes offers an invaluable strategy to help agricultural production become more sustainable while also meeting growing demands for food, feed and fiber. A plethora of interconnected interactions among the host, environment microbes, occurring both above below ground, drive recognition, recruitment colonization resulting in activation downstream host responses functionality. Dissecting these complex by integrating multiomic approaches, high‐throughput culturing, computational synthetic biology advances is providing deeper understanding structure function native microbial communities. Such insights are paving way towards development products as well engineered with communities capable delivering agronomic solutions. While there a market microbial‐based solutions improve crop productivity, challenges commercialization remain. The continued translation microbiome knowledge into real‐world scenarios will require concerted transdisciplinary research, cross‐training next generation scientists, targeted educational efforts prime growers general public successful adoption innovative technologies.

Язык: Английский

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Coordination between microbiota and root endodermis supports plant mineral nutrient homeostasis

Science, Год журнала: 2020, Номер 371(6525)

Опубликована: Ноя. 20, 2020

Plant roots and animal guts have evolved specialized cell layers to control mineral nutrient homeostasis. These must tolerate the resident microbiota while keeping homeostatic integrity. Whether how root diffusion barriers in endodermis, which are critical for balance of plants, coordinate with is unknown. We demonstrate that genes controlling endodermal function model plant Arabidopsis thaliana contribute microbiome assembly. characterized a regulatory mechanism differentiation driven by profound effects on Furthermore, we this linked microbiota's capacity repress responses phytohormone abscisic acid root. Our findings establish endodermis as hub coordinating assembly mechanisms.

Язык: Английский

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Tailoring plant-associated microbial inoculants in agriculture: a roadmap for successful application

Journal of Experimental Botany, Год журнала: 2020, Номер 71(13), С. 3878 - 3901

Опубликована: Март 9, 2020

Abstract Plants are now recognized as metaorganisms which composed of a host plant associated with multitude microbes that provide the variety essential functions to adapt local environment. Recent research showed remarkable importance and range microbial partners for enhancing growth health plants. However, plant–microbe holobionts influenced by many different factors, generating complex interactive systems. In this review, we summarize insights from emerging field, highlighting factors contribute recruitment, selection, enrichment, dynamic interactions plant-associated microbiota. We then propose roadmap synthetic community application aim establishing sustainable agricultural systems use communities enhance productivity plants independently chemical fertilizers pesticides. Considering global warming climate change, suggest desert can serve suitable pool potentially beneficial maintain under abiotic stress conditions. Finally, framework advancing inoculants in agriculture.

Язык: Английский

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Coumarin Communication Along the Microbiome–Root–Shoot Axis

Trends in Plant Science, Год журнала: 2020, Номер 26(2), С. 169 - 183

Опубликована: Окт. 3, 2020

Язык: Английский

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Two unequally redundant "helper" immune receptor families mediate Arabidopsis thaliana intracellular "sensor" immune receptor functions

PLoS Biology, Год журнала: 2020, Номер 18(9), С. e3000783 - e3000783

Опубликована: Сен. 14, 2020

Plant nucleotide-binding (NB) leucine-rich repeat (LRR) receptor (NLR) proteins function as intracellular immune receptors that perceive the presence of pathogen-derived virulence (effectors) to induce responses. The 2 major types plant NLRs "sense" pathogen effectors differ in their N-terminal domains: these are Toll/interleukin-1 resistance (TIR) domain-containing (TNLs) and coiled-coil (CC) (CNLs). In many angiosperms, RESISTANCE TO POWDERY MILDEW 8 (RPW8)-CC domain containing NLR (RNL) subclass CNLs is encoded by gene families, ACTIVATED DISEASE 1 (ADR1) N REQUIREMENT GENE (NRG1), act "helper" during multiple sensor NLR-mediated Despite important role immunity, knowledge specific, redundant, synergistic functions helper RNLs limited. We demonstrate ADR1 NRG1 families an unequally redundant manner basal resistance, effector-triggered immunity (ETI) regulation defense expression. define RNL redundancy ETI conferred some TNLs against virulent pathogens. that, Arabidopsis thaliana, contribute specific initiated TNLs. Time-resolved whole genome expression profiling revealed "classical" trigger similar transcriptome changes, suggesting like other mediate downstream activation. Together, our genetic data confirm fully required for TNL signaling, can also support activation CNL-mediated ETI.

Язык: Английский

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