Frontiers in Ecology and Evolution,
Год журнала:
2022,
Номер
10
Опубликована: Авг. 2, 2022
Animal
specimens
in
natural
history
collections
are
invaluable
resources
examining
the
historical
context
of
pathogen
dynamics
wildlife
and
spillovers
to
humans.
For
example,
may
reveal
new
associations
between
bat
species
coronaviruses.
However,
RNA
viruses
difficult
study
because
protocols
for
extracting
from
these
have
not
been
optimized.
Advances
made
our
ability
recover
nucleic
acids
formalin-fixed
paraffin-embedded
samples
(FFPE)
commonly
used
human
clinical
studies,
yet
other
types
formalin
preserved
received
less
attention.
Here,
we
optimize
recovery
ethanol-preserved
museum
order
improve
usability
surveys
zoonotic
diseases.
We
provide
quality
quantity
measures
replicate
tissues
subsamples
22
five
genera
(
Rhinolophus
,
Hipposideros
Megareops
Cynopterus
Nyctalus
)
collected
China
Myanmar
1886
2003.
As
a
single
specimen
were
variety
ways,
including
(8
bats),
frozen
(13
flash
(2
able
compare
yield
across
different
preservation
methods.
extracted
is
highly
fragmented,
but
usable
short-read
sequencing
targeted
amplification.
Incubation
with
Proteinase-K
following
thorough
homogenization
improves
yield.
This
optimized
protocol
extends
data
that
can
be
derived
existing
facilitates
future
examinations
host
specimens.
The Lancet Global Health,
Год журнала:
2022,
Номер
10(4), С. e579 - e584
Опубликована: Март 15, 2022
The
COVID-19
pandemic
has
underscored
the
need
to
strengthen
national
surveillance
systems
protect
a
globally
connected
world.
In
low-income
and
middle-income
countries,
zoonotic
disease
advanced
considerably
in
past
two
decades.
However,
efforts
often
prioritise
urban
adjacent
rural
communities.
Communities
remote
areas
have
had
far
less
support
despite
having
routine
exposure
diseases
due
frequent
contact
with
domestic
wild
animals,
restricted
access
health
care.
Limited
is
crucial
gap
global
security.
Although
this
point
been
made
past,
practical
solutions
on
how
implement
efficiently
these
resource-limited
logistically
challenging
settings
yet
be
discussed.
We
highlight
why
investing
of
countries
will
benefit
community
review
current
approaches.
Using
semi-arid
regions
Kenya
as
case
study,
we
provide
approach
by
which
can
strengthened
integrated
into
existing
systems.
This
Viewpoint
represents
transition
from
simply
highlighting
for
more
holistic
solid
plan
outcome
might
achieved.
Emerging
infectious
diseases,
biodiversity
loss,
and
anthropogenic
environmental
change
are
interconnected
crises
with
massive
social
ecological
costs.
In
this
Review,
we
discuss
how
pathogens
parasites
responding
to
global
change,
the
implications
for
pandemic
prevention
conservation.
Ecological
evolutionary
principles
help
explain
why
both
pandemics
wildlife
die-offs
becoming
more
common;
land-use
loss
often
followed
by
an
increase
in
zoonotic
vector-borne
diseases;
some
species,
such
as
bats,
host
so
many
emerging
pathogens.
To
prevent
next
pandemic,
scientists
should
focus
on
monitoring
limiting
spread
of
a
handful
high-risk
viruses,
especially
at
key
interfaces
farms
live-animal
markets.
But
address
much
broader
set
disease
risks
associated
Anthropocene,
decision-makers
will
need
develop
comprehensive
strategies
that
include
pathogen
surveillance
across
species
ecosystems;
conservation-based
interventions
reduce
human–animal
contact
protect
health;
health
system
strengthening;
improvements
epidemic
preparedness
response.
Scientists
can
contribute
these
efforts
filling
gaps
data,
expanding
evidence
base
disease–driver
relationships
interventions.
This
Review
explores
relationship
between
diseases
connected
changes
Anthropocene.
Annual Review of Genetics,
Год журнала:
2021,
Номер
55(1), С. 633 - 659
Опубликована: Сен. 23, 2021
Natural
history
collections
are
invaluable
repositories
of
biological
information
that
provide
an
unrivaled
record
Earth's
biodiversity.
Museum
genomics—genomics
research
using
traditional
museum
and
cryogenic
the
infrastructure
supporting
these
investigations—has
particularly
enhanced
in
ecology
evolutionary
biology,
study
extinct
organisms,
impact
anthropogenic
activity
on
However,
leveraging
genomics
has
exposed
challenges,
such
as
digitizing,
integrating,
sharing
data;
updating
practices
to
ensure
broadly
optimal
data
extraction
from
existing
new
collections;
modernizing
practices,
infrastructure,
policies
fair,
sustainable,
genomically
manifold
uses
by
increasingly
diverse
stakeholders.
poised
address
challenges
and,
with
sensitive
approaches,
will
catalyze
a
future
era
reproducibility,
innovation,
insight
made
possible
through
integrating
genome
sciences.
BioScience,
Год журнала:
2022,
Номер
72(10), С. 978 - 987
Опубликована: Авг. 3, 2022
The
early
twenty-first
century
has
witnessed
massive
expansions
in
availability
and
accessibility
of
digital
data
virtually
all
domains
the
biodiversity
sciences.
Led
by
an
array
asynchronous
digitization
activities
spanning
ecological,
environmental,
climatological,
biological
collections
data,
these
initiatives
have
resulted
a
plethora
mostly
disconnected
siloed
leaving
to
researchers
tedious
time-consuming
manual
task
finding
connecting
them
usable
ways,
integrating
into
coherent
sets,
making
interoperable.
focus
date
been
on
elevating
analog
physical
records
replicas
local
databases
prior
ever-growing
aggregations
essentially
discipline-specific
information.
In
present
article,
we
propose
new
interconnected
network
objects
Internet-the
Digital
Extended
Specimen
(DES)
network-that
transcends
existing
aggregator
technology,
augments
DES
with
third-party
through
machine
algorithms,
provides
platform
for
more
efficient
research
robust
interdisciplinary
discovery.
Royal Society Open Science,
Год журнала:
2022,
Номер
9(2)
Опубликована: Фев. 1, 2022
Climate
change,
emerging
infectious
diseases
(EIDs)
and
food
security
create
a
dangerous
nexus.
Habitat
interfaces,
assumed
to
be
efficient
buffers,
are
being
disrupted
by
human
activities
which
in
turn
accelerate
the
movement
of
pathogens.
EIDs
threaten
directly
indirectly
availability
access
nutritious
food,
affecting
global
health.
In
next
70
years,
food-secure
food-insecure
countries
will
face
driving
increasingly
unsustainable
costs
production,
predicted
exceed
national
gross
domestic
products.
Our
modern
challenge
is
transform
this
business
as
usual
embrace
an
alternative
vision
biosphere
formalized
Stockholm
paradigm
(SP).
First,
pathogen-centric
focus
shifts
our
risk
space,
determining
how
pathogens
circulate
realized
potential
fitness
space.
Risk
space
pathogen
exchange
always
heightened
at
habitat
interfaces.
Second,
apply
document-assess-monitor-act
(DAMA)
protocol
developing
strategic
data
for
EID
risk,
translated,
synthesized
broadcast
actionable
information.
management
through
targeted
interventions
focused
around
information
exchanged
among
community
scientists,
policy
practitioners
public
health
local
populations.
Ultimately,
SP
DAMA
protect
rights,
supporting
security,
environmental
integrity.
PLoS Biology,
Год журнала:
2023,
Номер
21(11), С. e3002318 - e3002318
Опубликована: Ноя. 22, 2023
Natural
history
museums
are
vital
repositories
of
specimens,
samples
and
data
that
inform
about
the
natural
world;
this
Formal
Comment
revisits
a
Perspective
advocated
for
adoption
compassionate
collection
practices,
querying
whether
it
will
ever
be
possible
to
completely
do
away
with
whole
animal
specimen
collection.
Transboundary and Emerging Diseases,
Год журнала:
2023,
Номер
2023, С. 1 - 17
Опубликована: Март 27, 2023
Bats
have
received
considerable
recent
attention
for
infectious
disease
research
because
of
their
potential
to
host
and
transmit
viruses,
including
Ebola,
Hendra,
Nipah,
multiple
coronaviruses.
These
pathogens
are
occasionally
transmitted
from
bats
wildlife,
livestock,
humans,
directly
or
through
other
bridging
(intermediate)
hosts.
Due
public
health
relevance,
zoonotic
viruses
a
primary
focus
attention.
In
contrast,
emerging
bats,
such
as
bacteria,
vastly
understudied
despite
ubiquity
diversity.
Here,
we
describe
the
currently
known
ranges
geographic
distributional
patterns
potentially
bacterial
genera
in
using
published
presence-absence
data
pathogen
occurrence.
We
identify
apparent
gaps
our
understanding
distribution
these
on
global
scale.
The
most
frequently
detected
Bartonella,
Leptospira,
Mycoplasma.
However,
wide
variety
also
found
Anaplasma,
Brucella,
Borrelia,
Coxiella,
Ehrlichia,
Francisella,
Neorickettsia,
Rickettsia.
bat
families
Phyllostomidae,
Vespertilionidae,
Pteropodidae
reported
hosts
pathogens;
however,
presence
at
least
one
genus
was
confirmed
all
15
tested.
On
spatial
scale,
molecular
diagnostics
samples
58
countries
four
overseas
departments
island
states
(French
Guiana,
Mayotte,
New
Caledonia,
Réunion
Island)
testing
bats.
identified
geographical
areas
that
been
mostly
neglected
during
Afrotropical
region
Southern
Asia.
Current
knowledge
is
strongly
biased
by
effort
towards
certain
taxonomic
groups
regions.
Identifying
biases
can
guide
future
surveillance
efforts,
contributing
better
ecoepidemiology
Proceedings of the National Academy of Sciences,
Год журнала:
2025,
Номер
122(6)
Опубликована: Янв. 30, 2025
Amid
global
challenges
like
climate
change,
extinctions,
and
disease
epidemics,
science
society
require
nuanced,
international
solutions
that
are
grounded
in
robust,
interdisciplinary
perspectives
datasets
span
deep
time.
Natural
history
collections,
from
modern
biological
specimens
to
the
archaeological
fossil
records,
crucial
tools
for
understanding
cultural
processes
shape
our
world.
At
same
time,
natural
collections
low
middle-income
countries
at-risk
underresourced,
imperiling
efforts
build
infrastructure
scientific
capacity
necessary
tackle
critical
challenges.
The
case
of
Mongolia
exemplifies
unique
preserving
a
country
with
limited
financial
resources
under
thumb
colonialism.
Specifically,
lack
biorepository
throughout
stymies
study
or
respond
large-scale
environmental
changes
era.
Investment
museum
training
develop
locally-accessible
characterize
communities
over
time
space
must
be
key
priority
future
where
scenarios,
predicting,
responding
zoonotic
disease,
making
informed
conservation
choices,
adapting
agricultural
challenges,
will
all
but
impossible
without
relevant
accessible
collections.
Collections’
digitisation
is
a
priority
in
many
natural
history
collections,
and
publicly
available
datasets
are
expanding
rapidly.
The
potential
value
of
collections
remains
largely
untapped
even
modern
research,
because
the
vast
scope
dwarfs
current
efforts
at
data
mobilisation.
Collections
continually
expanding,
there
an
estimated
3
billion
undigitised
specimen
records
worldwide.
In
this
review,
we
use
simple
model
to
illustrate
that
global
will
not
succeed
until
late
21
st
century
earliest,
unless
new
technologies
harnessed
commitments
by
funding
bodies
society
made.
As
advance
toward
digitisation,
equally
important
consideration
majority
these
digital
only
represent
fraction
information
potentially
from
collection
objects.
term
“collectomics”
was
coined
discussions
within
Senckenberg
institution
as
phrase
for
frameworks
embrace
all
future
knowledge
derived
specimens.
This
expands
on
concept
museomics,
which
originally
defined
focus
molecular
generated
museum
Rooted
extended
specimen,
collectomics
encompasses
metadata,
images,
traits,
DNA,
further
extracted
with
yet
unknown
applications,
connected
environmental
other
historical
contextual
information.
Thus,
view
under
limited
but
directly
integrates
evolutionary,
ecosystem
social
sciences,
including
human
contributions
collectors,
donors,
researchers
past
future.
A
envisions
seamless
integration
multidimensional
specimen-based
data,
interoperability
among
historical,
artistic,
ethnographic,
generate
needed
tackle
challenges.
PLoS ONE,
Год журнала:
2024,
Номер
19(5), С. e0296478 - e0296478
Опубликована: Май 31, 2024
More
than
tools
for
managing
physical
and
digital
objects,
museum
collection
management
systems
(CMS)
serve
as
platforms
structuring,
integrating,
making
accessible
the
rich
data
embodied
by
natural
history
collections.
Here
we
describe
Arctos,
a
scalable
community
solution
publishing
global
biological,
geological,
cultural
collections
research
education.
Specific
goals
are
to:
(1)
Describe
core
features
implementation
of
Arctos
broad
audience
with
respect
to
biodiversity
informatics
principles
that
enable
high
quality
research;
(2)
Highlight
unique
aspects
Arctos;
(3)
Illustrate
model
supporting
enhancing
Digital
Extended
Specimen
concept;
(4)
Emphasize
role
improving
discovery
enabling
cross-disciplinary,
integrative
studies
within
sustainable
governance
model.
In
addition
detailing
both
professionals
database
platform,
discuss
how
achieves
its
richly
annotated
creating
web
knowledge
deep
connections
between
catalog
records
derived
or
associated
data.
We
also
highlight
value
an
educational
resource.
Finally,
present
financial
fiscal
sponsorship
nonprofit
organization,
implemented
in
2022,
ensure
long-term
success
sustainability
Arctos.