Agricultural science and practice,
Год журнала:
2024,
Номер
10(3)
Опубликована: Фев. 28, 2024
Aim.The
aim
was
to
gain
experience
of
the
animal
health
services
detect
and
properly
identify
SARS-CoV-2
virus
with
whole-genome
sequencing
method
its
genetic
variability
in
Ukraine
relation
possible
future
spread
animals.Methods.Sixteen
positive
samples,
not
sequenced
before,
were
provided
by
Center
for
Public
Health
Ministry
Ukraine.These
samples
obtained
from
hospitalized
patients
early
October
mid-November
2021.The
viral
RNA
isolated
nasopharyngeal
swab
qPCR
(Ct
21-28)
(males
females)
moderate
severe
symptoms
who
being
hospitalized.The
fully
anonymized.The
Ion
Torrent
S5
instrument
(Oxford
Nanopore,
USA)
used
sequence
mentioned
isolates,
originating
Ukraine.TorrentSuite
5.16.1
data
processing
analysis.Nextclade
2.3.0
phylogenetic
analysis
locate
6
on
global
tree.It
determined
relations
between
tested
sequences
495
verifi
ed
high
quality,
reported
deposited
GI-SAID
EpiCoV™
database,
(https://gisaid.org/)for
period
January
2020
-December
2022.In
comparison
obtained,
isolate
Wuhan-Hu-1
(GenBank
NC_045512.2)
as
a
reference
sequence,
according
which
aligned.All
studies
carried
out
laboratory
Research
Training
Animal
Disease
Diagnostics
at
Institute
Veterinary
Medicine
National
Academy
Sciences
Ukraine.Results.Among
16
isolates
tested,
all
confi
rmed
contain
RNA,
only
six
suffi
cient
quality
could
be
classifi
ed,
fi
ve
them
Delta
variants
(two
belong
lineage
AY.126
(B.1.617.2.33),
two
AY.122
(B.1.617.2.122),
one
AY.4.2.3
(B.1.617.2.4.2)),
an
Omicron
variant
(BA.1.18).Important
mutations
detected
our
S:N501Y
substitution
S:H69
deletion
gene
envelope
spike
protein.Among
examined
(BA.1.18)was
found
exhibit
greater
variability,
over
60
compared
previous
variants.In
investigation,
we
identifi
too,
ranging
35
(B.1.617.2.122)
41
(B.1.617.2.33)
genome
(MN908947)
variant.Important
regarding
infectivity
1)
variants:
T478K,
L452R
RBD
region,
2)
variant:
S371L,
G339D,
S375F,
S373P,
K417N,
N440K,
S477N,
G446S,
E484A,
Q493R,
Q498R,
G496S,
N501Y,
Y505H
region.Conclusions.The
performed,
three
sublines
found:
(B.1.617.2.4.2)
subline
(BA.1.18),all
international
database
GISAID
EPI_SET_230516yp.The
this
study
add
existing
ones
delivered
can
laboratories,
(including
veterinary
ones),
detecting
risk
populations,
order
prevent
disease
humans
animals,
well
mutational
changes
pathogen
that
may
affect
pathogenicity.
Abstract
The
epidemiological
situation
of
SARS-CoV-2
in
humans
and
animals
is
continually
evolving.
To
date,
animal
species
known
to
transmit
are
American
mink,
raccoon
dog,
cat,
ferret,
hamster,
house
mouse,
Egyptian
fruit
bat,
deer
mouse
white-tailed
deer.
Among
farmed
animals,
mink
have
the
highest
likelihood
become
infected
from
or
further
SARS-CoV-2.
In
EU,
44
outbreaks
were
reported
2021
farms
seven
MSs,
while
only
six
2022
two
thus
representing
a
decreasing
trend.
introduction
into
usually
via
humans;
this
can
be
controlled
by
systematically
testing
people
entering
adequate
biosecurity.
current
most
appropriate
monitoring
approach
for
outbreak
confirmation
based
on
suspicion,
dead
clinically
sick
case
increased
mortality
positive
farm
personnel
genomic
surveillance
virus
variants.
analysis
showed
mink-specific
clusters
with
potential
spill
back
human
population.
companion
cats,
ferrets
hamsters
those
at
risk
infection,
which
likely
originates
an
human,
has
no
very
low
impact
circulation
wild
(including
zoo
animals),
mostly
carnivores,
great
apes
been
naturally
cases
wildlife
so
far.
Proper
disposal
waste
advised
reduce
risks
spill-over
wildlife.
Furthermore,
contact
wildlife,
especially
if
dead,
should
minimised.
No
specific
recommended
apart
hunter-harvested
clinical
signs
found-dead.
Bats
monitored
as
natural
host
many
coronaviruses.
Journal of Virology,
Год журнала:
2023,
Номер
97(4)
Опубликована: Март 10, 2023
When
humans
experience
a
new,
devastating
viral
infection
such
as
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2),
significant
challenges
arise.
How
should
individuals
well
societies
respond
to
the
situation?
One
of
primary
questions
concerns
origin
SARS-CoV-2
virus
that
infected
and
was
transmitted
efficiently
among
humans,
resulting
in
pandemic.
At
first
glance,
question
appears
straightforward
answer.
However,
has
been
topic
substantial
debate
primarily
because
we
do
not
have
access
some
relevant
data.
least
two
major
hypotheses
suggested:
natural
through
zoonosis
followed
by
sustained
human-to-human
spread
or
introduction
into
from
laboratory
source.
Here,
summarize
scientific
evidence
informs
this
provide
our
fellow
scientists
public
with
tools
join
discussion
constructive
informed
manner.
Our
goal
is
dissect
make
it
more
accessible
those
interested
important
problem.
The
engagement
broad
representation
critical
ensure
policy-makers
can
draw
on
expertise
navigating
controversy.
Veterinary Microbiology,
Год журнала:
2024,
Номер
290, С. 110001 - 110001
Опубликована: Янв. 21, 2024
The
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
is
an
emerging
zoonotic
virus
of
public
and
animal
health
concern,
which
felids
have
been
suggested
as
potential
reservoirs.
Although
SARS-CoV-2
exposure
has
detected
in
domestic
wild
captive
animals
belonging
to
Felidae
family,
surveillance
not
carried
out
free-ranging
so
far.
aim
the
present
study
was
assess
Iberian
lynx
(Lynx
pardinus),
most
endangered
felid
world.
Between
2019
2022,
we
conducted
a
seroepidemiological
276
lynxes.
Our
results
evidenced
limited
(0.4%;
95%CI:
0.0-1.1)
but
negligible
this
species,
increasing
host
range.
circulation
wildlife
evidences
need
integrated
European
monitoring.
Microbial Biotechnology,
Год журнала:
2023,
Номер
16(7), С. 1397 - 1411
Опубликована: Май 8, 2023
Abstract
This
Lilliput
explores
the
current
epidemiological
and
virological
arguments
for
a
zoonotic
origin
of
COVID‐19
pandemic.
While
role
bats,
pangolins
racoon
dogs
as
viral
reservoirs
has
not
yet
been
proven,
spill‐over
coronavirus
infection
from
animals
into
humans
at
Huanan
food
market
in
Wuhan
much
greater
plausibility
than
alternative
hypotheses
such
laboratory
virus
escape,
deliberate
genetic
engineering
or
introduction
by
cold
chain
products.
highlights
dynamic
nature
animal‐human
interface
cross‐infections
feral
white
tail
deer
farmed
minks
(reverse
zoonosis).
Surveillance
infections
is
an
urgent
task
since
live
animal
markets
are
only
risks
future
spill‐overs.
Climate
change
will
induce
migration
which
leads
to
exchanges
between
species
that
have
met
past.
Environmental
deforestation
also
increase
contact
humans.
Developing
early
warning
system
emerging
becomes
thus
societal
necessity
human
but
environmental
health
(One
Health
concept).
Microbiologists
developed
tools
ranging
virome
analysis
key
suspects
(bats,
wild
game
animals,
bushmeat)
exposed
wastewater
detect
known
unknown
viruses
circulating
population
sentinel
studies
animal‐exposed
patients
with
fever.
Criteria
need
be
assess
virulence
transmissibility
viruses.
An
costly
political
lobbying.
The
accelerating
number
pandemic
potential
over
last
decades
should
provide
public
pressure
extend
preparedness
inclusion
alert
systems.
ABSTRACT
In
late
2019,
SARS-CoV-2
spilled
over
from
an
animal
host
into
humans,
where
it
efficiently
spread,
resulting
in
the
COVID-19
pandemic.
Through
both
natural
and
experimental
infections,
we
learned
that
many
species
are
susceptible
to
SARS-CoV-2.
Importantly,
animals
close
proximity
including
companion,
farmed,
those
at
zoos
aquariums,
became
infected,
studies
demonstrated
transmission
to/from
humans
these
settings.
this
study,
first
review
literature
of
infections
tigers
lions
compare
species,
sex,
age,
virus
antibody
detection
assay,
types,
frequency,
length
clinical
signs,
demonstrating
broad
heterogeneity
among
infections.
We
then
describe
a
outbreak
lions,
tigers,
hyenas
Denver
Zoo
2021.
Animals
were
tested
for
viral
RNA
(vRNA)
4
months.
Lions
had
significantly
more
vRNA
nasal
swabs
than
hyenas,
individual
experienced
recrudescence
after
weeks
undetectable
vRNA.
Infectious
was
correlated
with
high
levels
likely
be
detected
earlier
during
infection.
Four
months
post-infection,
all
generated
robust
neutralizing
titers.
infected
Delta
lineage
AY.20
identical
variant
circulating
less
1%
Colorado
time,
suggesting
single
spillover
event
human
spread
within
between
housed
zoo.
Better
understanding
epidemiology
susceptibility
is
critical
limit
current
future
protect
health.
IMPORTANCE
Surveillance
testing
have
shown
wildlife,
conservatory,
Early
pandemic,
big
cats
zoological
institutions
documented
cases
naturally
animals;
however,
challenges
ability
collect
longitudinal
samples
zoo
limited
our
kinetics
clearance
measured
RNA,
infectious
virus,
antibodies,
initial
clearance.
found
longer
higher
compared
other
species.
All
by
rare
population,
followed
interspecies
transmission.
These
data
important
better
spillover,
infection
multiple
animals.
Viruses,
Год журнала:
2023,
Номер
15(4), С. 837 - 837
Опубликована: Март 24, 2023
On
a
global
scale,
the
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
poses
serious
threat
to
health
of
human
population.
Not
only
humans
can
be
infected,
but
also
their
companion
animals.
The
antibody
status
115
cats
and
170
dogs,
originating
from
177
German
households
known
have
been
SARS-CoV-2
positive,
was
determined
by
enzyme-linked
immunosorbent
assay
(ELISA),
results
were
combined
with
information
gathered
questionnaire
that
completed
owner(s)
true
seroprevalences
among
dogs
42.5%
(95%
CI
33.5–51.9)
56.8%
49.1–64.4),
respectively.
In
multivariable
logistic
regression
accounting
for
data
clustered
in
households,
cats,
number
infected
household
an
above-average
contact
intensity
turned
out
significant
risk
factors;
outside
protective
factor.
For
on
contrary,
factor,
reduced
contact,
once
infection
known,
No
association
found
between
reported
clinical
signs
animals
status,
no
spatial
clustering
positive
test
identified.
Journal of General Virology,
Год журнала:
2023,
Номер
104(12)
Опубликована: Дек. 7, 2023
Repeat
spillover
of
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
into
new
hosts
has
highlighted
the
critical
role
cross-species
transmission
coronaviruses
and
establishment
reservoirs
virus
in
pandemic
epizootic
spread
coronaviruses.
Species
particularly
susceptible
to
SARS-CoV-2
include
Mustelidae
(mink,
ferrets
related
animals),
cricetid
rodents
(hamsters
felids
(domestic
cats
animals)
white-tailed
deer.
These
predispositions
led
us
screen
British
wildlife
with
sarbecovirus-specific
quantitative
PCR
pan
assays
for
using
samples
collected
during
human
establish
if
widespread
was
occurring.
Fourteen
species
(
Antiviral Research,
Год журнала:
2024,
Номер
231, С. 105969 - 105969
Опубликована: Июль 23, 2024
In
the
SARS-CoV-2
pandemic,
so
far
two
most
effective
approved
antivirals
are
protease
inhibitors
nirmatrelvir,
in
combination
with
ritonavir
(Paxlovid)
and
ensitrelvir
(Xocova).
However,
indeed
all
antimicrobial
drugs
sooner
or
later
challenged
by
resistance
mutations.
Studying
such
mutations
is
essential
for
treatment
decisions
pandemic
preparedness.
At
same
time,
generating
resistant
viruses
to
assess
mutants
controversial,
especially
pathogens
of
potential
like
SARS-CoV-2.
To
circumvent
gain-of-function
research
non-attenuated
SARS-CoV-2,
a
previously
developed
safe
system
based
on
chimeric
vesicular
stomatitis
virus
dependent
main
(VSV-Mpro)
was
used
select
against
ensitrelvir.
Ensitrelvir
clinically
relevant
due
its
single-substance
formulation,
avoiding
drug-drug
interactions
co-formulated
CYP3A4
inhibitor
Paxlovid.
By
treating
VSV-Mpro
ensitrelvir,
several
highly-specific
this
were
selected,
while
being
still
fully
largely
susceptible
nirmatrelvir.
We
then
confirmed
ensitrelvir-specific
gold
standard
enzymatic
assays
replicons.
These
findings
indicate
that
can
have
distinct
viral
profiles,
which
could
determine
decisions.
Veterinary Science Today,
Год журнала:
2025,
Номер
14(1), С. 69 - 75
Опубликована: Март 22, 2025
Introduction
.
The
new
coronavirus
infection
(COVID-19)
agent
SARS-CoV-2
has
become
widespread
in
the
world
and
caused
pandemic
that
started
2019.
virus
is
a
zooanthroponotic
infectious
causes
humans
as
well
many
mammal
species.
To
date,
been
reported
both
domestic
wild
animals.
Moreover,
successful
experimental
of
certain
animal
species
was
during
studies.
There
also
evidence
infected
animals
can
transmit
to
other
natural
settings
through
contactincluding
transmission
between
different
Currently,
some
researchers
fear
may
spread
mammalian
will
reservoir
responsible
for
this
outbreaks
humans.
Furthermore,
effect
on
potentially
susceptible
species,
including
endangered
currently
not
fully
understood.
Therefore,
requires
further
study.
This
highly
sensitive
specific
diagnostic
methods.
Enzyme-linked
immunosorbent
assay
(ELISA)
using
nucleocapsid
protein
an
antigen
be
used
serological
surveillance
Recombinant
most
preferable
because
its
safety.
Objective
study
aimed
at
preparing
concentrated
recombinant
testing
it
antigenic
activity
specificity.
Materials
methods
following
study:
SARS-CoV-2,
pQE
plasmid,
Escherichia
coli
JM109
strain.
performed:
reverse
transcription
polymerase
chain
reaction,
molecular
cloning,
synthesis,
purification,
indirect
ELISA
used.
Results
Molecular
cloning
N-gene
carried
out
prokaryotic
expression
system.
clones
producing
33
kDa
SARSCoV-2
were
prepared.
Optimal
purification
conditions
preparation
determined.
It
shown
optimal
inducer
concentration
0.5
mМ,
period
4
hours.
Urea
8
M
denaturing
imidazole
0.4
elution
buffer
selected
based
results
purification.
Use
procedure
allowed
us
prepare
1.5
mg
purified
from
100
mL
culture.
demonstrated
high
specificity
when
tested
with
ELISA.
Conclusion
Preparation
enables
use
test
system
detection
antibodies
against
sera.
PLoS Computational Biology,
Год журнала:
2024,
Номер
20(7), С. e1012263 - e1012263
Опубликована: Июль 12, 2024
Emerging
infectious
diseases
with
zoonotic
potential
often
have
complex
socioecological
dynamics
and
limited
ecological
data,
requiring
integration
of
epidemiological
modeling
surveillance.
Although
our
understanding
SARS-CoV-2
has
advanced
considerably
since
its
detection
in
late
2019,
the
factors
influencing
introduction
transmission
wildlife
hosts,
particularly
white-tailed
deer
(
Odocoileus
virginianus
),
remain
poorly
understood.
We
use
a
Susceptible-Infected-Recovered-Susceptible
model
to
investigate
spillover
risk
wild
captive
populations
across
various
simulated
scenarios.
found
that
scenarios
pose
higher
from
humans
into
herds
subsequent
among
deer,
compared
herds.
However,
even
herds,
is
substantial
enough
sustain
infections.
Furthermore,
we
demonstrate
strength
influences
outbreak
characteristics
only
certain
extent.
Transmission
was
frequently
sufficient
for
widespread
outbreaks
populations,
regardless
initial
level
introduction.
also
explore
fence
line
interactions
between
elevate
metrics
lowest
sustained
transmission.
Our
results
indicate
could
be
introduced
maintained
range
circumstances
based
on
testing
risks
approach
findings
will
aid
One
Health
strategies
mitigate
persistent
spillback
humans.