Integrative Analysis of Hepatopancreas Transcriptome and Proteome in Female Eriocheir sinensis under Thermal Stress

International Journal of Molecular Sciences, Год журнала: 2024, Номер 25(13), С. 7249 - 7249

Опубликована: Июнь 30, 2024

The Chinese mitten crab (

Язык: Английский

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Unraveling the Stress Response: How Low Temperature and Nanoparticles Impact the Chinese Mitten Crab (Eriocheir sinensis)

Journal of Hazardous Materials, Год журнала: 2025, Номер 494, С. 138775 - 138775

Опубликована: Май 29, 2025

Язык: Английский

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Tire microplastics exposure in soil induces changes in expression profile of immune-related genes in terrestrial crustacean Porcellio scaber

Environmental Pollution, Год журнала: 2022, Номер 314, С. 120233 - 120233

Опубликована: Сен. 21, 2022

Язык: Английский

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Molecular pathways of osmoregulation in response to salinity stress in the gills of the scalloped spiny lobster (Panulirus homarus) within survival salinity

Comparative Biochemistry and Physiology Part D Genomics and Proteomics, Год журнала: 2024, Номер 52, С. 101308 - 101308

Опубликована: Авг. 10, 2024

Язык: Английский

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Race to the poles: the thermal response of the transcriptome of two range-expanding pelagic amphipod species

Frontiers in Marine Science, Год журнала: 2024, Номер 11

Опубликована: Март 21, 2024

Introduction Hyperiid amphipods of the genus Themisto are a key polar zooplankton group in terms biomass and play an important role as prey for higher trophic levels. They prone to undergo changes abundance distribution course ongoing environmental changes. In Southern Ocean, gaudichaudii is predicted expand its poleward. Arctic, boreal-Atlantic T. abyssorum increases abundance, resulting increased competition with genuine congener. It not known, however, whether have potential efficiently adapt changing water temperatures at their current range or they will be shifting ranges Methods We exposed two species from different geographic populations temperature-change experiments, cold treatment heat-shock treatment. After that, we carried out transcriptome sequencing compare gene expression patterns treatments species. Results show that under similar heat conditions, differentially expressed more genes (26-fold change) than . Furthermore, observed qualitative differences between genetic clusters Discussion The suggest evolutionary divergence can linked regulatory pathways involved temperature stress. These could influence capacity each cluster cope differently contrast congeneric species, showed pronounced adaptive flexibility thermal stress; it appears ability continue poleward expansion but may also increasing environments. Our findings contribute understand response range-shifting stress view gradients encounter throughout future ranges.

Язык: Английский

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Positive selection in cilia-related genes may facilitate deep-sea adaptation of Thermocollonia jamsteci

The Science of The Total Environment, Год журнала: 2024, Номер 950, С. 175358 - 175358

Опубликована: Авг. 8, 2024

Язык: Английский

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Salinity Fluctuation on the Genetic Regulatory Mechanisms of the Crustacean, Charybdis japonica

Frontiers in Marine Science, Год журнала: 2022, Номер 9

Опубликована: Июль 7, 2022

The intertidal salinity fluctuations provide pose a significant physical challenge for the crustaceans that live here. In present study, Charybdis japonica was selected as research species to explore genetic regulatory mechanisms of responding fluctuations. We cultured C. s with three gradients (the 15‰, 25‰, and 35‰) 68.90 Gb clean transcriptome reads were obtained by RNA-seq. All then de novo assembled 41,058 unigene mean length 1,179.39 bp an N50 2,033 bp. Furthermore, total 18,100 (24.74%) unigenes successfully matched sequences from at least one database. further analyzed structure 26,853 CDSs 12,190 SSRs predicted. gene expression levels 25‰ used control, 204 5,392 DEGs found 35‰ respectively. Based on annotated information DEGs, we speculated japonicas subjected greater stress under isotonic intracellular regulation activated. neuronal activity, oxidation response, activity osmotic regulation-related genes be critical cope results will fundamental revealing fluctuation-related other crustaceans, help us predict how future changes affect survival crustaceans.

Язык: Английский

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Transcriptome analysis and identification of differentially expressed genes between early and mature ovarian stages in the female mantis shrimp (Harpiosquilla raphidea) using RNA-Seq

Aquaculture Reports, Год журнала: 2024, Номер 34, С. 101910 - 101910

Опубликована: Янв. 8, 2024

Harpiosquilla raphidea, the largest of mantis shrimps, is a commercially important crustacean species widely distributed in many countries Pacific Ocean. However, no data are currently available regarding molecular mechanisms that regulate reproduction this species. To address knowledge gap, we performed transcriptome sequencing (RNA-Seq) previtellogenic and vitellogenic ovaries female H. compared expression patterns transcripts from two resulting libraries to identify genes involved ovarian development. A total 418,635,748 clean reads were retrieved after removing adapter sequences filtering out low-quality data. The assembled into 242,861 unigenes with an average length 585.27 base pairs (bp) N50 829 bp. search all against NR (non-redundant protein), SwissProt, KEGG, GO, COG databases yielded 53,111; 25,460; 27,255; 26,793; 3838 unigene matches, respectively). Of 53,111 identified database, 30,441 could be functionally annotated, 59.49% which significantly matched L. vannamei. 13,867 full-length 11,441 partial retrieved. In addition, using all-unigenes as reference, 12,765 simple sequence repeats (SSRs) identified. DESeq2 analysis 962 differentially expressed (DEGs) between ovaries, 456 upregulated 506 downregulated. Five validated by quantitative real-time PCR (qPCR). results both RNA-Seq qPCR revealed raphidea vitellogenin gene (HrVtg) was ovaries. open reading frame HrVtg found 7455 bp long, corresponding polypeptide 2485 amino acids. functional pathways here provide valuable dataset for understanding controlling development raphidea.

Язык: Английский

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Identification and construction of lncRNA-miRNA-mRNA ceRNA networks associated with temperature changes in Sebastiscus marmoratus

Journal of Oceanology and Limnology, Год журнала: 2024, Номер unknown

Опубликована: Июль 6, 2024

Язык: Английский

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Comparative transcriptome analysis of low- and high-latitude populations of Charybdis japonica under temperature stress

Frontiers in Marine Science, Год журнала: 2024, Номер 11

Опубликована: Ноя. 4, 2024

Global climate change has caused rapid temperature changes in marine environments. Understanding how organisms respond to can help predict their richness of future biodiversity. In this study, we examined the gene expression levels and difference pathways that are responsive acute stress low- high-latitude populations shore swimming crab, Charybdis japonica . The two C. were exposed high-temperature stresses (15°C 28°C) used for transcriptome sequencing. Genetic regulatory ability compared determine diverse response crab change. functional enrichment analysis showed low-latitude regulated more genes (938) mainly enriched DNA replication metabolic pathways, whereas less (309) genetic information processing at low-temperature stress. Furthermore, (33) processing, (280) signal transduction cellular process These results implied population was resilient stress, while This study enhances our understanding different geographic varying environments living zone, which could be helpful predicting biodiversity trends intertidal crustaceans under global

Язык: Английский

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