Advances in ecological research/Advances in Ecological Research, Год журнала: 2022, Номер unknown, С. 27 - 99
Опубликована: Янв. 1, 2022
Язык: Английский
Horticulture Research, Год журнала: 2022, Номер 9
Опубликована: Янв. 1, 2022
Abstract Soil microbiota has increasingly been shown to play an integral role in viticulture resilience. The emergence of new metagenomic and culturomic technologies led significant advances the study microbial biodiversity. In agricultural sector, soil plant microbiomes have found significantly improve resistance environmental stressors diseases, as well influencing crop yields fruit quality thus improving sustainability under shifting environments. Grapevines are usually cultivated a scion grafted on rootstocks, which selected according pedoclimatic conditions cultural practices, known terroir. rootstock connects surrounding vine’s aerial part impacts growth berry quality. Understanding microbiome dynamics is relevant important field study, may be critical This review aims highlight relationship between grapevine roots telluric diversity activity. addition, this explores concept core regarding potential applications engineering with goal enhancing adaptation biotic abiotic stress.
Язык: Английский
Процитировано
66
Microbiology Spectrum, Год журнала: 2022, Номер 10(5)
Опубликована: Сен. 22, 2022
Fermented foods often have attractive flavor characteristics to meet various human demands. An ever-challenging target is the production of fermented with equal profiles outside product's origin. However, formation geography-dependent in high-complexity fermentations remains poorly understood. Here, taking Chinese liquor (baijiu) fermentation as an example, we collected 403 samples from 9 different locations China across a latitude range 27°N 37°N. We revealed and validated patterns by using culture-independent (metabolomics, metagenomics, metatranscriptomics) culture-dependent tools. found that baijiu microbiomes along their metabolites were related geography dependent. The geographical determined mainly 20 40 differentiated chemical markers latitude-dependent fungal structure microbiome. About 48 156 core microbiota members out 735 bacterial genera 290 contributed markers. contributions both fungi bacteria greater than those either or alone. Representatively, dynamic interdependent interactions between yeasts Lactobacillus facilitated metabolism heterocyclic chemicals such 2-acetylpyrrole, 2,3,5-trimethylpyrazine, 2-acetylfuran. Moreover, intraspecific genomic diversity microbial two biotic factors microbiome assembly. Based on assembly pattern, adjusting composition distribution initial species was one option regulate diverse characteristics. Our study provided rationale for developing design achieve defined goal. IMPORTANCE People consume many spontaneously beverages flavors daily basis. One crucial hotly discussed question how reproduce food without limitations constantly enriched knowledge contribution offers valuable insights into biotechnological development. still poor understanding what limit reproduction origin spontaneous fermentations. fungus-bacterium cooperative metabolism. distinct composition, distribution, limited reproducible areas. abundant resources predicted enable us synthetic community desired future.
Язык: Английский
Процитировано
52
Environmental Microbiome, Год журнала: 2022, Номер 17(1)
Опубликована: Апрель 28, 2022
Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during different stages storage using amplicon sequencing, qPCR, microscopic approaches.Strawberry carried a highly diverse microbiome, therein bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), Burkholderiaceae (11%); fungal family Mycosphaerella (45%) were most abundant. All compartments colonized high number bacteria fungi (107-1010 marker gene copies per g fresh weight), characterized microbial diversity (6049 1501 ASVs); both higher belowground samples than in phyllosphere. Compartment type main driver diversity, structure, abundance (bacterial: 45%; fungal: 61%) when compared to cultivar (1.6%; 2.2%). strongly divided habitats phyllosphere; only low proportion transferred from soil via rhizosphere During development, observed highest rates transfer leaves flowers ripe fruits, where occured inside pulp. In postharvest decreased while overall increased. Developing decay caused Botrytis cinerea well, induced reduction potentially beneficial taxa.Our findings provide insights into highlight importance microbe development with potential implications food health safety.
Язык: Английский
Процитировано
45
Foods, Год журнала: 2023, Номер 12(3), С. 673 - 673
Опубликована: Фев. 3, 2023
Spontaneous fermentations that do not rely on backslopping or industrial starter cultures were especially important to the early development of society and are still practiced around world today. While current literature spontaneous is observational descriptive, it understand underlying mechanism microbial community assembly how this correlates with changes observed in succession, composition, interaction, metabolite production. food beverage home autochthonous bacteria fungi naturally inoculated from raw materials, environment, equipment. This review discusses factors play an role assembly, particularly focusing commonly reported yeasts isolated spontaneously fermenting beverages, affects fermentation dynamics. A wide range studies have been conducted fermented foods highlight some mechanisms involved interactions, niche adaptation, lifestyle these microorganisms. Moreover, we will also controlled culture experiments provide greater insight into understanding a modest attempt decoding complexity fermentations. Further research using specific vitro models core microbiota needed fill knowledge gap currently exists phenotypic genotypic expression microorganisms aid their successful adaptation shape outcomes. Furthermore, there vast opportunity strain level implications assembly. Translating findings help improving other systems gain more control over process maintain consistent superior product quality.
Язык: Английский
Процитировано
33
Trends in Food Science & Technology, Год журнала: 2024, Номер 150, С. 104569 - 104569
Опубликована: Июнь 1, 2024
Язык: Английский
Процитировано
15
Journal of Fungi, Год журнала: 2022, Номер 8(7), С. 737 - 737
Опубликована: Июль 16, 2022
The fast and continued progress of high-throughput sequencing (HTS) the drastic reduction its costs have boosted new unpredictable developments in field plant pathology. cost whole-genome sequencing, which, until few years ago, was prohibitive for many projects, is now so affordable that a branch, phylogenomics, being developed. Fungal taxonomy deeply influenced by genome comparison, too. It easier to discover genes as potential targets an accurate diagnosis or emerging pathogens, notably those quarantine concern. Similarly, with development metabarcoding metagenomics techniques, it possible unravel complex diseases answer crucial questions, such “What’s my soil?”, good approximation, including fungi, bacteria, nematodes, etc. technologies allow redraw approach disease control strategies considering pathogens within their environment deciphering interactions between microorganisms cultivated crops. This kind analysis usually generates big data need sophisticated bioinformatic tools (machine learning, artificial intelligence) management. Herein, examples use research fungal diversity some are reported.
Язык: Английский
Процитировано
37
Microbiome, Год журнала: 2022, Номер 10(1)
Опубликована: Дек. 9, 2022
From a theoretical ecology point of view, microbiomes are far more complex than expected. Besides competition and competitive exclusion, cooperative microbe-microbe interactions have to be carefully considered. Metabolic dependencies among microbes likely explain co-existence in microbiota.
Язык: Английский
Процитировано
30
Agronomy, Год журнала: 2024, Номер 14(1), С. 131 - 131
Опубликована: Янв. 4, 2024
The domestication of vines started in Asia 11,000 years ago, although it was not until the 19th century that oenology established as a scientific discipline thanks to research Louis Pasteur on role microorganisms wine fermentation. At present time, progression next-generation sequencing (NGS) technologies is helping facilitate identification microbial dynamics during winemaking. These advancements have aided winemakers gaining more comprehensive understanding microbiota fermentation process, which, turn, ultimately responsible for delivery provisioning (wine features and its production), regulating (such carbon storage by vineyards, regulation soil quality, biocontrol pests diseases) or cultural aesthetic values vineyard landscapes, scholarly enjoyment wine, sense belonging wine-growing regions) ecosystem services. To our knowledge, this first review state knowledge services sector, well possibility valuing them monetary terms operating logic chains, such those suggested SEEA-EA framework. This paper concludes with management practices may enhance value smart farming task.
Язык: Английский
Процитировано
7
Agriculture Ecosystems & Environment, Год журнала: 2025, Номер 382, С. 109506 - 109506
Опубликована: Янв. 21, 2025
Язык: Английский
Процитировано
1
International Journal of Food Microbiology, Год журнала: 2025, Номер 433, С. 111111 - 111111
Опубликована: Фев. 16, 2025
Язык: Английский
Процитировано
1