Metabolomics, Год журнала: 2025, Номер 21(2)
Опубликована: Фев. 20, 2025
Язык: Английский
Genes, Год журнала: 2023, Номер 14(6), С. 1281 - 1281
Опубликована: Июнь 16, 2023
The present day's ongoing global warming and climate change adversely affect plants through imposing environmental (abiotic) stresses disease pressure. major abiotic factors such as drought, heat, cold, salinity, etc., hamper a plant's innate growth development, resulting in reduced yield quality, with the possibility of undesired traits. In 21st century, advent high-throughput sequencing tools, state-of-the-art biotechnological techniques bioinformatic analyzing pipelines led to easy characterization plant traits for stress response tolerance mechanisms by applying 'omics' toolbox. Panomics pipeline including genomics, transcriptomics, proteomics, metabolomics, epigenomics, proteogenomics, interactomics, ionomics, phenomics, have become very handy nowadays. This is important produce climate-smart future crops proper understanding molecular responses genes, transcripts, proteins, epigenome, cellular metabolic circuits resultant phenotype. Instead mono-omics, two or more (hence 'multi-omics') integrated-omics approaches can decipher well. Multi-omics-characterized be used potent genetic resources incorporate into breeding program. For practical utility crop improvement, multi-omics particular combined genome-assisted (GAB) being pyramided improved yield, food quality associated agronomic open new era omics-assisted breeding. Thus, together are able processes, biomarkers, targets engineering, regulatory networks precision agriculture solutions crop's variable ensure security under changing circumstances.
Язык: Английский
Процитировано
92
Frontiers in Plant Science, Год журнала: 2024, Номер 14
Опубликована: Янв. 5, 2024
Global agricultural production must double by 2050 to meet the demands of an increasing world human population but this challenge is further exacerbated climate change. Environmental stress, heat, and drought are key drivers in food security strongly impacts on crop productivity. Moreover, global warming threatening survival many species including those which we rely for production, forcing migration cultivation areas with impoverishing environment genetic variability fall out effects security. This review considers relationship climatic changes their bearing sustainability natural ecosystems, as well role omics-technologies, genomics, proteomics, metabolomics, phenomics ionomics. The use resource saving technologies such precision agriculture new fertilization discussed a focus breeding plants higher tolerance adaptability mitigation tools changes. Nevertheless, exposed multiple stresses. study lays basis proposition novel research paradigm referred holistic approach that went beyond exclusive concept yield, included sustainability, socio-economic commercialization, agroecosystem management.
Язык: Английский
Процитировано
47
Biotechnology Advances, Год журнала: 2025, Номер unknown, С. 108520 - 108520
Опубликована: Янв. 1, 2025
Язык: Английский
Процитировано
3
South African Journal of Botany, Год журнала: 2023, Номер 161, С. 258 - 268
Опубликована: Авг. 18, 2023
Язык: Английский
Процитировано
38
Nucleic Acids Research, Год журнала: 2023, Номер 52(D1), С. D1639 - D1650
Опубликована: Окт. 9, 2023
Abstract Advanced multi-omics technologies offer much information that can uncover the regulatory mechanisms from genotype to phenotype. In soybean, numerous databases have been published. Although they cover multiple omics, there are still limitations when it comes types and scales of omics datasets analysis methods utilized. This study aims address these by collecting integrating a comprehensive set datasets. includes 38 genomes, transcriptomes 435 tissue samples, 125 phenotypes 6686 accessions, epigenome data involving histone modification, transcription factor binding, chromosomal accessibility interaction, as well genetic variation 24 501 soybean accessions. Then, common pipelines statistical were applied mine datasets, resulting in successful establishment user-friendly database called SoyMD (https://yanglab.hzau.edu.cn/SoyMD/#/). provides researchers with efficient query options tools, allowing them swiftly access relevant conduct analyses. Another notable feature is its capability facilitate candidate genes, demonstrated case on seed oil content. highlights immense potential breeding functional genomics research.
Язык: Английский
Процитировано
25
New Crops, Год журнала: 2024, Номер 1, С. 100030 - 100030
Опубликована: Июнь 2, 2024
Root system architecture, a crucial agronomic trait for sustainable crop production, is influenced by variety of internal developmental signals and external environmental factors. In this review, we highlight recent advancements in understanding the molecular mechanisms behind root meristem maintenance, cell differentiation, lateral growth, hair development, crown formation. Additionally, explore how abiotic stresses such as drought, salinity, nitrate deficiency, aluminum toxicity impact architecture. We identify key target genes that regulate offering potential targets genome editing future improvement. Finally, discuss opportunities challenges de novo design
Язык: Английский
Процитировано
17
The Plant Journal, Год журнала: 2024, Номер 119(5), С. 2168 - 2180
Опубликована: Июль 11, 2024
SUMMARY Mass spectrometry imaging (MSI) has become increasingly popular in plant science due to its ability characterize complex chemical, spatial, and temporal aspects of metabolism. Over the past decade, as emerging unique features various MSI techniques have continued support new discoveries studies metabolism closely associated with function physiology, spatial metabolomics based on positioned it at forefront metabolic studies, providing opportunity for far higher resolution than was previously available. Despite these efforts, profound challenges levels resolution, sensitivity, quantitative ability, chemical confidence, isomer discrimination, multi‐omics integration, undoubtedly remain. In this Perspective, we provide a contemporary overview emergent widely used sciences, particular emphasis recent advances methodological breakthroughs. Having established detailed context MSI, outline both golden opportunities key currently facing metabolomics, presenting our vision how enormous potential technologies will contribute progress coming years.
Язык: Английский
Процитировано
14
Molecular Plant, Год журнала: 2025, Номер unknown
Опубликована: Янв. 1, 2025
Язык: Английский
Процитировано
1
Frontiers in Plant Science, Год журнала: 2024, Номер 15
Опубликована: Май 22, 2024
Editorial: Applications of artificial intelligence, machine learning, and deep learning in plant breeding
Язык: Английский
Процитировано
8
Опубликована: Янв. 1, 2024
Язык: Английский
Процитировано
8