Heliyon,
Год журнала:
2023,
Номер
10(1), С. e23495 - e23495
Опубликована: Дек. 9, 2023
BackgroundWe
aimed
to
identify
two
new
prognostic
subtypes
and
create
a
predictive
index
for
prostate
cancer
(PCa)
patients
based
on
ferroptosis
database.MethodsThe
nonnegative
matrix
factorization
approach
was
used
molecular
subtypes.
We
investigate
the
differences
between
cluster
1
2
in
terms
of
clinical
features,
functional
pathways,
tumour
stemness,
heterogeneity,
gene
mutation
immune
microenvironment
score
after
identifying
Colony
formation
assay
flow
cytometry
were
performed.ResultsThe
stratification
clusters
closely
connected
BCR-free
survival
using
method,
which
validated
other
three
datasets.
Furthermore,
multivariate
Cox
regression
analysis
revealed
that
this
classification
an
independent
risk
factor
with
PCa.
Ribosome,
aminoacyl
tRNA
production,
oxidative
phosphorylation,
Parkinson's
disease-related
pathways
shown
be
highly
enriched
1.
In
comparison
2,
exhibited
significantly
reduced
CD4+
T
cells,
CD8+
neutrophils,
dendritic
cells
tumor
scores.
Only
HHLA2
more
abundant
Moreover,
we
found
P4HB
downregulation
could
inhibit
colony
ability
contributed
cell
apoptosis
C4-2B
DU145
lines.ConclusionsWe
discovered
associated
immunological
dysfunction
PCa
ferroptosis-related
genes
lines.
Redox Biology,
Год журнала:
2024,
Номер
73, С. 103208 - 103208
Опубликована: Май 24, 2024
Recently,
numerous
studies
have
reported
the
interaction
between
senescence
and
oxidative
stress
in
cancer.
However,
there
is
a
lack
of
comprehensive
understanding
precise
mechanisms
involved.
Aging and Disease,
Год журнала:
2024,
Номер
unknown, С. 0 - 0
Опубликована: Янв. 1, 2024
Numerous
research
works
have
emphasized
the
critical
role
that
circadian
rhythm
plays
in
tumor
microenvironment
(TME).
The
goal
of
clarifying
chrono-pharmacological
strategies
for
improving
cancer
treatment
clinical
settings
is
a
continuous
endeavor.
Consequently,
to
enhance
use
time-based
pharmaceutical
therapies
oncology,
combining
existing
knowledge
on
rhythms'
roles
within
TME
essential.
This
perspective
elucidates
functions
rhythms
across
various
stages
development,
progression,
and
metastasis.
Specifically,
aging,
angiogenesis,
inflammation
are
implicated
modulating
TME.
Furthermore,
exerts
profound
influence
current
treatments
thereby
generates
chronotheray
manage
tumors.
From
perspective,
offers
promising
opportunities
prevention
treatment;
nevertheless,
further
study
needed
address
unanswered
scientific
problems.
Journal of Translational Medicine,
Год журнала:
2025,
Номер
23(1)
Опубликована: Янв. 4, 2025
CXCL14
is
a
highly
conserved
chemokine
expressed
in
various
cell
types,
playing
crucial
roles
both
physiological
and
pathological
processes,
including
immune
regulation
tumorigenesis.
Recently,
the
role
of
tumors
has
attracted
considerable
attention.
However,
previous
pan-cancer
studies
have
reported
inconsistencies
regarding
effects
on
tumors,
particularly
concerning
its
expression
levels
tumor
tissues
influence
phenotypes
cancer
cells.
This
variability
believed
to
stem
from
context-dependent
nature
CXCL14,
as
different
sources
secretion
within
distinct
microenvironments
may
mediate
diverse
biological
effects.
Such
phenomena
also
been
observed
prostate
research.
Despite
foundational
understanding
cancer,
there
remains
lack
comprehensive
reviews
summarizing
specific
this
systematically
analyzing
reasons
behind
complex
Therefore,
article
aims
discuss
microenvironment
explore
future
research
directions
potential
applications.
Scientific Reports,
Год журнала:
2023,
Номер
13(1)
Опубликована: Июнь 3, 2023
Abstract
Current
evidence
indicate
that
cancer-associated
fibroblasts
(CAFs)
play
an
important
role
in
prostate
cancer
(PCa)
development
and
progression.
In
this
study,
we
identified
CAF-related
molecular
subtypes
prognostic
index
for
PCa
patients
undergoing
radical
prostatectomy
through
integrating
single-cell
bulk
RNA
sequencing
data.
We
completed
analyses
using
software
R
3.6.3
its
suitable
packages.
Through
analysis,
NDRG2,
TSPAN1,
PTN,
APOE,
OR51E2,
P4HB,
STEAP1
ABCC4
were
used
to
construct
gene
(CRGPI).
These
genes
could
clearly
divide
the
into
two
TCGA
database
BCR
risk
of
subtype
1
was
13.27
times
higher
than
2
with
statistical
significance.
Similar
results
observed
MSKCC2010
GSE46602
cohorts.
addtion,
molucular
independent
factor
patients.
orchestrated
CRGPI
based
on
above
divided
430
high-
low-
groups
according
median
value
score.
found
high-risk
group
had
significant
low-risk
(HR:
5.45).
For
functional
protein
secretion
highly
enriched
while
snare
interactions
vesicular
transport
1.
terms
tumor
heterogeneity
stemness,
showd
levels
TMB
2.
addition,
activated
dendritic
cell
score
Based
eight
genes,
developed
constructed
a
index,
which
predict
prognosis
very
well.
International Journal of Surgery,
Год журнала:
2024,
Номер
110(4), С. 2323 - 2337
Опубликована: Янв. 18, 2024
Spindle
and
kinetochore-associated
complex
subunit
3
(SKA3)
is
a
microtubule-binding
subcomplex
of
the
outer
kinetochore,
which
plays
vital
role
in
proper
chromosomal
segregation
cell
division.
Recently,
SKA3
have
been
demonstrated
its
oncogenic
tumorigenesis
development
cancers.
In
this
review,
authors
comprehensively
deciphered
human
cancer
from
various
aspects,
including
bibliometrics,
pan-cancer
analysis,
narrative
summary.
The
also
provided
top
10
predicted
drugs
targeting
SKA3.
proposed
that
was
potential
target
brought
new
therapeutic
opportunities
for
patients.
Journal of Cancer Research and Clinical Oncology,
Год журнала:
2024,
Номер
150(3)
Опубликована: Март 12, 2024
Abstract
Background
There
is
currently
a
limited
number
of
studies
on
transglutaminase
type
1
(TGM1)
in
tumors.
The
objective
this
study
to
perform
comprehensive
analysis
across
various
types
cancer
determine
the
prognostic
significance
TGM1
tumors
and
investigate
its
role
immune
environment.
Method
Pan-cancer
mutational
data
were
retrieved
from
TCGA
database
analyzed
using
R
(version
3.6.4)
associated
software
package.
expression
difference
prognosis
examined,
along
with
correlation
tumor
heterogeneity,
stemness,
mutation
landscape,
RNA
modification.
Additionally,
relationship
between
immunity
was
investigated
TIMER
method.
Results
expressed
differently
normal
samples
overall
survival
progression-free
time
KIRC,
ACC,
SKCM,
LIHC,
STES.
In
LICH,
we
found
negative
6
indicators
stemness.
frequencies
BLCA,
KIRC
1.7%,
0.3%,
0.3%
respectively.
BLCA
BRCA,
there
significant
infiltration
CD4
+
T
cells,
CD8
neutrophils,
dendritic
cells.
Conclusion
has
potential
serve
as
both
marker
drug
target.
Frontiers in Pharmacology,
Год журнала:
2023,
Номер
14
Опубликована: Фев. 28, 2023
Background:
Colon
adenocarcinoma
(COAD)
is
a
heterogeneous
tumor
and
senescence
crucial
in
the
occurrence
of
cancer.
This
study
aimed
to
identify
senescence-based
subtypes
construct
prognostic
signature
predict
prognosis
guide
immunotherapy
or
chemotherapy
decisions
for
COAD
patients.
Methods:
Based
on
single-cell
RNA
sequencing
(scRNA-seq)
data
13
samples
from
Gene
Expression
Omnibus
(GEO)
database,
we
assessed
cellular
characteristics.
Transcriptome
data,
copy
number
variations
(CNVs)
single
nucleotide
(SNVs)
were
obtained
The
Cancer
Genome
Atlas
(TCGA)
database.
GSE39582
GSE17537
used
validation.
Senescence
identified
using
unsupervised
consensus
clustering
analysis,
was
developed
univariate
Cox
analysis
least
absolute
shrinkage
selection
operator
(LASSO).
Response
risk
groups
predicted
half-maximal
inhibitory
concentration
(IC50)
values.
We
further
analyzed
relationship
between
gene
expression
methylation
level.
prediction
performance
by
nomogram.
Results:
Senescence-related
pathways
highly
enriched
malignant
cells
bulk
RNA-seq
verified
senescence.
Three
identified,
which
patients
clust3
had
poorest
higher
T
stage,
accompanied
with
mutation
burden
(TMB)
mutations,
activated
inflammatory
response,
more
immune
cell
infiltration,
escape
tendency.
A
11
genes
(MFNG,
GPRC5B,
TNNT1,
CCL22,
NOXA1,
PABPC1L,
PCOLCE2,
MID2,
CPA3,
HSPA1A,
CALB1)
established,
accurately
lower
high
Its
robustness
validated
external
cohort.
Low
sensitive
small
molecule
drugs
including
Erlotinib,
Sunitinib,
MG-132,
CGP-082996,
AZ628,
Sorafenib,
VX-680,
Z-LLNle-CHO.
Risk
score
an
independent
factor
nomogram
confirmed
its
reliability.
Four
(CALB1,
TNNT1)
significant
positive
correlation
their
level,
while
six
(CCL22,
MFNG,
PCOLCE2)
negatively
correlated
Conclusion:
provides
novel
understanding
heterogeneity
perspective
senescence,
develops
signatures
COAD.
European journal of medical research,
Год журнала:
2023,
Номер
28(1)
Опубликована: Июнь 14, 2023
Apolipoprotein
F
(APOF)
has
been
less
studied
in
cancers.
Thus,
we
aimed
to
perform
a
pan-cancer
analysis
of
the
oncogenic
and
immunological
effects
APOF
on
human
cancer.A
standardized
TCGA
dataset
was
downloaded.
Differential
expression,
clinical
prognosis,
genetic
mutations,
immune
infiltration,
epigenetic
modifications,
tumor
stemness
heterogeneity
were
analyzed.
We
conducted
all
analyses
through
software
R
(version
3.6.3)
its
suitable
packages.Overall,
found
that
common
cancers
differentially
expressed
between
normal
samples
prognostic-associated
BRCA,
PRAD,
KIRP,
LIHC
terms
overall
survival
(OS),
disease-free
(DFS)
progression-free
(PFS).
The
Spearman
showed
mRNA
expression
negatively
correlated
with
four
indexes
(DMPss,
DNAss,
ENHss,
EREG-METHss)
statistical
significance
for
PRAD
positively
LIHC.
In
BRCA
patients,
negative
correlation
TMB,
MSI,
neo,
HRD
LOH.
mutation
frequencies
0.3%.
infiltration
purity
patients.
associated
most
TILs
LIHC,
B
cells,
CD4+
T
neutrophils,
macrophages
dendritic
but
CD8+
cells.Our
study
offered
relatively
comprehensive
understanding
roles
Aging and Disease,
Год журнала:
2023,
Номер
unknown
Опубликована: Янв. 1, 2023
Prolyl
4-hydroxylase
subunit
beta
(P4HB)
can
catalyze
the
formation,
breakage
and
rearrangement
of
disulfide
bonds
through
two
thioredoxin
domains,
which
is
important
for
maintenance
oxidizing
environment
in
endoplasmic
reticulum.
Recently,
P4HB
has
been
demonstrated
its
oncogenic
role
tumorigenesis
development
cancers.
Therefore,
we
comprehensively
deciphered
human
cancer
from
various
aspects,
including
pan-cancer
analysis
narrative
summary.
We
also
provided
some
possible
interacted
molecules
top
10
predicted
drugs
targeting
to
contribute
future
research.
proposed
that
was
a
potential
target
brought
new
therapeutic
opportunities
patients.