The Plant Cell,
Год журнала:
2024,
Номер
36(6), С. 2410 - 2426
Опубликована: Март 26, 2024
DNA
repair
proteins
can
be
recruited
by
their
histone
reader
domains
to
specific
epigenomic
features,
with
consequences
on
intragenomic
mutation
rate
variation.
Here,
we
investigated
H3K4me1-associated
hypomutation
in
plants.
We
first
examined
2
which,
plants,
contain
Tudor
domains:
PRECOCIOUS
DISSOCIATION
OF
SISTERS
5
(PDS5C),
involved
homology-directed
repair,
and
MUTS
HOMOLOG
6
(MSH6),
a
mismatch
protein.
The
MSH6
domain
of
Arabidopsis
(Arabidopsis
thaliana)
binds
H3K4me1
as
previously
demonstrated
for
PDS5C,
which
localizes
H3K4me1-rich
gene
bodies
essential
genes.
Mutations
revealed
ultradeep
sequencing
wild-type
msh6
knockout
lines
show
that
functional
is
critical
the
reduced
single-base
substitution
(SBS)
mutations
regions.
explored
breadth
these
mechanisms
among
plants
examining
large
rice
(Oryza
sativa)
data
set.
conserved
are
H3K4me1-binding
residues
PDS5C
domains.
Recruitment
reveals
convergent,
but
distinct,
epigenome-recruited
from
those
well
described
humans.
emergent
model
H3K4me1-recruited
consistent
evolutionary
theory
regarding
modifier
systems
offers
mechanistic
insight
into
variation
Antioxidants,
Год журнала:
2024,
Номер
13(3), С. 312 - 312
Опубликована: Март 1, 2024
Since
the
evolution
of
aerobic
metabolism,
reactive
oxygen
species
(ROS)
have
represented
significant
challenges
to
diverse
life
forms.
In
recent
decades,
increasing
knowledge
has
revealed
a
dual
role
for
ROS
in
cell
physiology,
showing
they
serve
as
major
source
cellular
damage
while
also
functioning
important
signaling
molecules
various
biological
processes.
Our
understanding
homeostasis
and
ROS-mediated
pathways
presumed
that
are
ancient
highly
conserved
mechanisms
shared
by
most
organisms.
However,
emerging
evidence
highlights
complexity
plasticity
signaling,
particularly
animals
evolved
extreme
environments.
this
review,
we
focus
on
generation,
antioxidative
systems
main
influenced
ROS.
addition,
discuss
ROS’s
responsive
transcription
regulation
how
it
may
been
shaped
over
course
evolution.
Cancers,
Год журнала:
2022,
Номер
14(16), С. 3888 - 3888
Опубликована: Авг. 11, 2022
DNA
damage
repair
(DDR)
defects
are
common
in
different
cancer
types,
and
these
alterations
can
be
exploited
therapeutically.
Epithelial
ovarian
(EOC)
is
among
the
tumours
with
highest
percentage
of
hereditary
cases.
BRCA1
BRCA2
predisposing
pathogenic
variants
(PVs)
were
first
to
associated
EOC,
whereas
additional
genes
comprising
homologous
recombination
(HR)
pathway
have
been
discovered
sequencing
technologies.
The
incidence
DDR
patients
metastatic
prostate
much
higher
compared
those
localized
disease.
Genetic
testing
playing
an
increasingly
important
role
treatment
cancer.
development
poly
(ADP-ribose)
polymerase
(PARP)
inhibitors
offers
a
therapeutic
strategy
for
EOC.
One
mechanisms
PARP
exploits
concept
synthetic
lethality.
Tumours
or
mutations
highly
sensitive
inhibitors.
Moreover,
lethal
interaction
may
beyond
germline
BRCA
context
HR
deficiency,
this
area
ongoing
research.
advanced
stages
as
castration-resistant
However,
there
major
concern
regarding
need
identify
reliable
biomarkers
predictive
response.
In
review,
we
explore
DDR,
potential
genomic
analysis
cancer,
therapeutics
inhibitors,
along
biomarkers.
Nature Genetics,
Год журнала:
2023,
Номер
55(2), С. 268 - 279
Опубликована: Янв. 19, 2023
Gene
expression
profiling
has
identified
numerous
processes
altered
in
aging,
but
how
these
changes
arise
is
largely
unknown.
Here
we
combined
nascent
RNA
sequencing
and
polymerase
II
chromatin
immunoprecipitation
followed
by
to
elucidate
the
underlying
mechanisms
triggering
gene
wild-type
aged
mice.
We
found
that
2-year-old
liver,
40%
of
elongating
polymerases
are
stalled,
lowering
productive
transcription
skewing
transcriptional
output
a
gene-length-dependent
fashion.
demonstrate
this
stress
caused
endogenous
DNA
damage
explains
majority
aging
most
mainly
postmitotic
organs,
specifically
affecting
hallmark
pathways
such
as
nutrient
sensing,
autophagy,
proteostasis,
energy
metabolism,
immune
function
cellular
resilience.
Age-related
evolutionary
conserved
from
nematodes
humans.
Thus,
accumulation
stochastic
during
deteriorates
basal
transcription,
which
establishes
age-related
transcriptome
causes
dysfunction
key
pathways,
disclosing
functionally
underlies
major
aspects
normal
aging.
Journal of Clinical Investigation,
Год журнала:
2022,
Номер
132(16)
Опубликована: Авг. 14, 2022
Over
the
course
of
a
human
lifespan,
genome
integrity
erodes,
leading
to
an
increased
abundance
several
types
chromatin
changes.
The
DNA
lesions
(chemical
perturbations
nucleotides)
increases
with
age,
as
does
number
genomic
mutations
and
transcriptional
disruptions
caused
by
replication
or
transcription
those
lesions,
respectively.
At
epigenetic
level,
precise
methylation
patterns
degrade,
likely
causing
increasingly
stochastic
variations
in
gene
expression.
Similarly,
tight
regulation
histone
modifications
begins
unravel.
instability
these
mechanisms
allows
transposon
element
reactivation
remobilization,
further
mutations,
dysregulation,
cytoplasmic
fragments.
This
cumulative
promotes
cell
signaling
events
that
drive
fate
decisions
extracellular
communications
known
disrupt
tissue
homeostasis
regeneration.
In
this
Review,
we
focus
on
age-related
changes
their
interactions
instigate
events.
Translational Neurodegeneration,
Год журнала:
2023,
Номер
12(1)
Опубликована: Апрель 14, 2023
Abstract
Redox
homeostasis
refers
to
the
balance
between
production
of
reactive
oxygen
species
(ROS)
as
well
nitrogen
(RNS),
and
their
elimination
by
antioxidants.
It
is
linked
all
important
cellular
activities
oxidative
stress
a
result
imbalance
pro-oxidants
antioxidant
species.
Oxidative
perturbs
many
activities,
including
processes
that
maintain
integrity
DNA.
Nucleic
acids
are
highly
therefore
particularly
susceptible
damage.
The
DNA
damage
response
detects
repairs
these
lesions.
Efficient
repair
essential
for
maintaining
viability,
but
they
decline
considerably
during
aging.
deficiencies
in
increasingly
described
age-related
neurodegenerative
diseases,
such
Alzheimer’s
disease,
Parkinson’s
amyotrophic
lateral
sclerosis
Huntington’s
disease.
Furthermore,
has
long
been
associated
with
conditions.
Moreover,
both
redox
dysregulation
increase
significantly
aging,
which
biggest
risk
factor
diseases.
However,
links
dysfunction
damage,
joint
contributions
pathophysiology
conditions,
only
just
emerging.
This
review
will
discuss
associations
address
increasing
evidence
an
major
source
disorders.
Understanding
connections
may
facilitate
better
understanding
disease
mechanisms,
ultimately
lead
design
therapeutic
strategies
based
on
preventing
Aging,
Год журнала:
2023,
Номер
15(13), С. 5966 - 5989
Опубликована: Июль 12, 2023
A
hallmark
of
eukaryotic
aging
is
a
loss
epigenetic
information,
process
that
can
be
reversed.
We
have
previously
shown
the
ectopic
induction
Yamanaka
factors
OCT4,
SOX2,
and
KLF4
(OSK)
in
mammals
restore
youthful
DNA
methylation
patterns,
transcript
profiles,
tissue
function,
without
erasing
cellular
identity,
requires
active
demethylation.
To
screen
for
molecules
reverse
rejuvenate
human
cells
altering
genome,
we
developed
high-throughput
cell-based
assays
distinguish
young
from
old
senescent
cells,
including
transcription-based
clocks
real-time
nucleocytoplasmic
compartmentalization
(NCC)
assay.
identify
six
chemical
cocktails,
which,
less
than
week
compromising
genome-wide
profile
transcriptomic
age.
Thus,
rejuvenation
by
age
reversal
achieved,
not
only
genetic,
but
also
means.
Human Reproduction Update,
Год журнала:
2023,
Номер
29(6), С. 773 - 793
Опубликована: Июль 19, 2023
Abstract
BACKGROUND
Modern
lifestyle
has
led
to
an
increase
in
the
age
at
conception.
Advanced
is
one
of
critical
risk
factors
for
female-related
infertility.
It
well
known
that
maternal
positively
correlates
with
deterioration
oocyte
quality
and
chromosomal
abnormalities
oocytes
embryos.
The
effect
on
endometrial
function
may
be
equally
important
factor
influencing
implantation
rate,
pregnancy
overall
female
fertility.
However,
there
are
only
a
few
published
studies
this
topic,
suggesting
area
been
under-explored.
Improving
our
knowledge
aging
from
biological
(cellular,
molecular,
histological)
clinical
perspectives
would
broaden
understanding
risks
age-related
OBJECTIVE
AND
RATIONALE
objective
narrative
review
critically
evaluate
existing
literature
focus
synthesizing
evidence
impact
conception
success.
This
provide
insights
into
gaps
application
research
findings
promote
development
treatment
options
field.
SEARCH
METHODS
was
prepared
using
PubMed
(Medline)
until
February
2023
keywords
such
as
‘endometrial
aging’,
‘receptivity’,
‘decidualization’,
‘hormone’,
‘senescence’,
‘cellular’,
‘molecular’,
‘methylation’,
‘biological
age’,
‘epigenetic’,
‘oocyte
recipient’,
donation’,
‘embryo
transfer’,
‘pregnancy
rate’.
Articles
language
other
than
English
were
excluded.
OUTCOMES
In
endometrium,
alterations
occur
cellular,
histological
levels
negative
biology
impair
receptivity.
Additionally,
advanced
influences
cellular
senescence,
which
plays
role
during
initial
phase
major
obstacle
suitable
senolytic
agents
aging.
Aging
also
accountable
chronic
conditions
associated
inflammaging,
eventually
can
lead
increased
pro-inflammation
tissue
fibrosis.
Furthermore,
epigenetic
regulation
thus
altering
relation
between
its
chronological
age.
donation
cycles
determine
receptivity
respect
rates
implantation,
pregnancy,
miscarriage,
live
birth
have
revealed
contradictory
inferences
indicating
need
future
mechanisms
corresponding
causal
effects
women’s
WIDER
IMPLICATIONS
Increasing
infertility
IVF
failures.
Based
complied
observations
synthesized
conclusions
review,
shown
functioning.
information
recommendations
focusing
molecular
composition,
transcriptomic
changes
further
prospective
needed
explore
newly
emerging
therapeutic
options,
target
without
affecting
decidualization.
Moreover,
trial
protocols,
cycles,
beneficial
direct
implications
outcomes.
International Journal of Molecular Sciences,
Год журнала:
2023,
Номер
24(18), С. 14279 - 14279
Опубликована: Сен. 19, 2023
Aging
is
considered
the
deterioration
of
physiological
functions
along
with
an
increased
mortality
rate.
This
scientific
review
focuses
on
central
importance
genomic
instability
during
aging
process,
encompassing
a
range
cellular
and
molecular
changes
that
occur
advancing
age.
In
particular,
this
revision
addresses
genetic
epigenetic
alterations
contribute
to
instability,
such
as
telomere
shortening,
DNA
damage
accumulation,
decreased
repair
capacity.
Furthermore,
explores
aging,
including
modifications
histones,
methylation
patterns,
role
non-coding
RNAs.
Finally,
discusses
organization
chromatin
its
contribution
heterochromatin
loss,
remodeling,
in
nucleosome
histone
abundance.
conclusion,
highlights
fundamental
plays
process
underscores
need
for
continued
research
into
these
complex
biological
mechanisms.