PARPs and ADP-ribosylation in RNA biology: from RNA expression and processing to protein translation and proteostasis DOI Open Access

Dae-Seok Kim,

Sridevi Challa,

Aarin Jones

и другие.

Genes & Development, Год журнала: 2020, Номер 34(5-6), С. 302 - 320

Опубликована: Фев. 6, 2020

ADP-ribosylation (ADPRylation) is a posttranslational modification of proteins discovered nearly six decades ago, but many important questions remain regarding its molecular functions and biological roles, as well the activity ADP-ribose (ADPR) transferase enzymes (PARP family members) that catalyze it. Growing evidence indicates PARP-mediated ADPRylation events are key regulators protein biosynthetic pathway, leading from rDNA transcription ribosome biogenesis to mRNA synthesis, processing, translation. In this review we describe role PARP in all facets pathway. PARP-1 enzymatic transcription, which critical step biogenesis. An emerging PARPs alternative splicing mRNAs, direct highlight members RNA processing. Furthermore, activity, stimulated by cellular stresses, such viral infections ER stress, leads regulation stability synthesis through posttranscriptional mechanisms. Dysregulation these processes can promote disease states. Collectively, results importance gene regulation, abundance. Future studies areas will yield new insights into fundamental mechanisms broader utility for PARP-targeted therapeutic agents.

Язык: Английский

NAD+ metabolism and its roles in cellular processes during ageing DOI
Anthony J. Covarrubias, Rosalba Perrone, Alessia Grozio

и другие.

Nature Reviews Molecular Cell Biology, Год журнала: 2020, Номер 22(2), С. 119 - 141

Опубликована: Дек. 22, 2020

Язык: Английский

Процитировано

947

Brain energy rescue: an emerging therapeutic concept for neurodegenerative disorders of ageing DOI
Stephen C. Cunnane, Eugenia Trushina, Cecilie Morland

и другие.

Nature Reviews Drug Discovery, Год журнала: 2020, Номер 19(9), С. 609 - 633

Опубликована: Июль 24, 2020

Язык: Английский

Процитировано

676

NAD+ metabolism: pathophysiologic mechanisms and therapeutic potential DOI Creative Commons
Na Xie, Lu Zhang, Wei Gao

и другие.

Signal Transduction and Targeted Therapy, Год журнала: 2020, Номер 5(1)

Опубликована: Окт. 7, 2020

Abstract Nicotinamide adenine dinucleotide (NAD + ) and its metabolites function as critical regulators to maintain physiologic processes, enabling the plastic cells adapt environmental changes including nutrient perturbation, genotoxic factors, circadian disorder, infection, inflammation xenobiotics. These effects are mainly achieved by driving effect of NAD on metabolic pathways enzyme cofactors transferring hydrogen in oxidation-reduction reactions. Besides, multiple -dependent enzymes involved physiology either post-synthesis chemical modification DNA, RNA proteins, or releasing second messenger cyclic ADP-ribose (cADPR) NAADP . Prolonged disequilibrium metabolism disturbs physiological functions, resulting diseases diseases, cancer, aging neurodegeneration disorder. In this review, we summarize recent advances our understanding molecular mechanisms -regulated responses stresses, contribution deficiency various via manipulating cellular communication networks potential new avenues for therapeutic intervention.

Язык: Английский

Процитировано

639

NAD+ in Brain Aging and Neurodegenerative Disorders DOI Creative Commons
Sofie Lautrup, David Sinclair, Mark P. Mattson

и другие.

Cell Metabolism, Год журнала: 2019, Номер 30(4), С. 630 - 655

Опубликована: Окт. 1, 2019

NAD+ is a pivotal metabolite involved in cellular bioenergetics, genomic stability, mitochondrial homeostasis, adaptive stress responses, and cell survival. Multiple NAD+-dependent enzymes are synaptic plasticity neuronal resistance. Here, we review emerging findings that reveal key roles for related metabolites the adaptation of neurons to wide range physiological stressors counteracting processes neurodegenerative diseases, such as those occurring Alzheimer's, Parkinson's, Huntington amyotrophic lateral sclerosis. Advances understanding molecular mechanisms NAD+-based resilience will lead novel approaches facilitating healthy brain aging treatment neurological disorders. Nicotinamide adenine dinucleotide (NAD+) fundamental molecule health disease, it central several bioenergetic functions. synthesized via three major pathways, including de novo biosynthesis, Preiss-Handler pathway, salvage pathway (Figure 1). While aspartate most photosynthetic eukaryotes, kynurenine only synthetic mammals. The starts with catabolism amino acid tryptophan converted two steps intermediate kynurenine, which can generate NAD+, kynurenic acid, or xanthurenic (Vécsei et al., 2013Vécsei L. Szalárdy Fülöp F. Toldi J. Kynurenines CNS: recent advances new questions.Nat. Rev. Drug Discov. 2013; 12: 64-82Crossref PubMed Scopus (263) Google Scholar). modulates functions synthesis neurotransmitters (glutamate acetylcholine) well regulates N-methyl-D-aspartate (NMDA) receptor activity free radical production exhibits "double-edged sword" effects on both neuroprotective (tryptophan, picolinic acid) neurotoxic intermediates, 3-hydroxykynurenine (3-HK) generates radicals, 3-hydroxyanthranilic (3-HAA), quinolinic (that induces glutamate excitotoxicity) an NMDA antagonist, agonist ambient levels these determined by different enzymes, preferentially localized microglia astrocytes, suggesting necessary glial cell-neuron communication (Schwarcz Pellicciari, 2002Schwarcz R. Pellicciari Manipulation kynurenines: targets, effects, clinical opportunities.J. Pharmacol. Exp. Ther. 2002; 303: 1-10Crossref (399) synthesize from pyridine bases. synthesizes nicotinic (NA) (NAAD). One important step constitutes nicotinamide mononucleotide adenylyltransferases (NMNATs), also pathways. Three mammalian NMNATs exist, NMNAT1–3, showing mice D. melanogaster models (Ali 2013Ali Y.O. Li-Kroeger Bellen H.J. Zhai R.G. Lu H.C. NMNATs, evolutionarily conserved maintenance factors.Trends Neurosci. 36: 632-640Abstract Full Text PDF (0) NMNAT1 NMNAT3 ubiquitously expressed, NMNAT2 enriched brain, adequate seem be essential axon development survival (Gilley 2019Gilley Mayer P.R. Yu G. Coleman M.P. Low compromise survival.Hum. Mol. Genet. 2019; 28: 448-458Crossref (4) recycling (NAM) (NMN) intracellular phosphoribosyltransferase (iNAMPT), followed conversion NMN into (Bogan Brenner, 2008Bogan K.L. Brenner C. Nicotinic nicotinamide, riboside: evaluation precursor vitamins human nutrition.Annu. Nutr. 2008; 115-130Crossref (269) Scholar, Verdin, 2015Verdin E. NAD(+) aging, metabolism, neurodegeneration.Science. 2015; 350: 1208-1213Crossref (234) Additionally, riboside (NR) integrates this NR kinase 1 (NRK1) NRK2 (Bieganowski 2004Bieganowski P. Discoveries nutrient NRK genes establish independent route fungi humans.Cell. 2004; 117: 495-502Abstract (315) Ratajczak 2016Ratajczak Joffraud M. Trammell S.A. Ras Canela N. Boutant Kulkarni S.S. Rodrigues Redpath Migaud M.E. al.NRK1 controls metabolism cells.Nat. Commun. 2016; 7: 13103Crossref (82) Despite NAMPT being relatively highly expressed brown adipocyte, liver, kidney tissues compared tissue mice, studies have supported role iNAMPT (Stein Imai, 2014Stein L.R. Imai S. Specific ablation Nampt adult neural stem cells recapitulates their functional defects during aging.EMBO 2014; 33: 1321-1340PubMed Stein Wozniak D.F. Dearborn J.T. Kubota Apte R.S. Izumi Y. Zorumski C.F. Expression hippocampal cortical excitatory critical cognitive function.J. 34: 5800-5815Crossref Zhang 2010Zhang W. Xie Wang T. Bi Li H. L.Q. Ye S.Q. Ding Neuronal protective PBEF mouse model cerebral ischemia.J. Cereb. Blood Flow Metab. 2010; 30: 1962-1971Crossref (62) Experimental evidence suggests blood NA NAM able cross plasma membrane, while cannot taken up directly but needs smaller uncharged molecules enter (Hara 2007Hara Yamada K. Shibata Osago Hashimoto Tsuchiya Elevation NAD involvement cells.J. Biol. Chem. 2007; 282: 24574-24582Crossref (104) Extracellularly, digested membrane-bound CD38 CD157, further metabolized extracellular (eNAMPT); however, CD73 ways been proposed. First, converts CD73, presumptive nucleoside transporter (Fletcher 2017Fletcher Doig C.L. Oakey L.A. Callingham Da Silva Xavier Garten A. Elhassan Y.S. al.Nicotinamide kinases display redundancy mediating skeletal muscle cells.Mol. 2017; 6: 819-832Crossref (11) Grozio 2013Grozio Sociali Sturla Caffa I. Soncini Salis Raffaelli De Flora Nencioni Bruzzone protein source precursors sustained biosynthesis FK866-treated tumor 288: 25938-25949Crossref (55) Nikiforov 2011Nikiforov Dölle Niere Ziegler Pathways subcellular compartmentation cells: entry generation.J. 2011; 286: 21767-21778Crossref (154) 2016Sociali Raffaghello Magnone Zamporlini Emionite Bianchi Vigliarolo Nahimana al.Antitumor effect combined inhibition ovarian cancer model.Oncotarget. 2968-2984Crossref (16) Second, may metabolize NMN, not NR, NAM, membrane (Camacho-Pereira 2016Camacho-Pereira Tarragó M.G. Chini C.C.S. Nin V. Escande Warner G.M. Puranik A.S. Schoon R.A. Reid J.M. Galina al.CD38 dictates age-related decline dysfunction through SIRT3-dependent mechanism.Cell 23: 1127-1139Abstract (112) Sauve 1998Sauve A.A. Munshi Lee Schramm V.L. reaction mechanism CD38. A single responsible cyclization, hydrolysis, base-exchange chemistries.Biochemistry. 1998; 37: 13239-13249Crossref (83) Third, has reported (Grozio 2019Grozio Mills K.F. Yoshino Tokizane Lei Cunningham Sasaki al.Slc12a8 transporter.Nat. 1: 47-57Crossref (88) 2011Yoshino Yoon M.J. mononucleotide, intermediate, treats pathophysiology diet- age-induced diabetes mice.Cell 14: 528-536Abstract (442) newly transporter, Slc12a8, regulated murine small intestine, Slc12a8 deficiency abrogates uptake vitro vivo These pathways detailed Figure 1. Studies humans indicate supplementation dramatically upregulates NAAD, unknown metabolic possibilities NAAD and/or (NAMN) (Trammell 2016aTrammell Schmidt M.S. Weidemann B.J. Jaksch Dellinger R.W. Z. Abel E.D. uniquely orally bioavailable humans.Nat. 12948Crossref (131) Thus, although intensively characterized long time, there remaining determined. vital redox cofactor ATP production, substrate at least four families healthspan longevity (Fang 2017Fang E.F. Lautrup Hou Y.J. Demarest T.G. Croteau D.L. Mattson Bohr V.A. aging: translational implications.Trends Med. 899-916Abstract Gomes 2013Gomes A.P. Price N.L. Ling A.J. Moslehi J.J. Montgomery M.K. Rajman White J.P. Teodoro J.S. Wrann C.D. Hubbard B.P. al.Declining pseudohypoxic state disrupting nuclear-mitochondrial aging.Cell. 155: 1624-1638Abstract (529) plays glycolysis citric (TCA) cycle, its ability accept hydride equivalents, forming NADH (Krebs, 1970Krebs H.A. Rate control tricarboxylic cycle.Adv. Enzyme Regul. 1970; 8: 335-353Crossref Wallace, 2012Wallace D.C. Mitochondria cancer.Nat. Cancer. 2012; 685-698Crossref (853) one electron donors oxidative phosphorylation (OXPHOS) mitochondria, providing electrons transport chain (ETC) ratio NAD+/NADH various reactions compartments, increased influence homeostasis changes (Ying, 2008Ying NADP+/NADPH death: regulation biological consequences.Antioxid. Redox Signal. 10: 179-206Crossref (649) functions, antioxidation generation stress, calcium death In addition NAD+-consuming proteins, catabolize NAM. They class III histone deacetylases sirtuins (SIRTs), poly (ADP-ribose) polymerases (PARPs), ADP ribosyl-cyclases (CD38/CD157), NADase sterile alpha TIR motif-containing (SARM1) mammals, seven SIRTs, regulate large number survival, rejuvenation, cancer, (Chalkiadaki Guarente, 2015Chalkiadaki Guarente multifaceted 15: 608-624Crossref (150) SIRTs spectrum disease 2000Imai Armstrong C.M. Kaeberlein Transcriptional silencing Sir2 NAD-dependent deacetylase.Nature. 2000; 403: 795-800Crossref (2280) For example, SIRT1 consumes glycolysis, gluconeogenesis, balance between biogenesis mitophagy responses exercise metabolic/excitatory challenges (Bonkowski Sinclair, 2016Bonkowski Sinclair D.A. Slowing ageing design: rise sirtuin-activating compounds.Nat. Cell 17: 679-690Crossref Cheng 2016Cheng Yang Zhou Maharana Peng Liu Wan Marosi Misiak al.Mitochondrial SIRT3 mediates challenges.Cell 128-142Abstract (98) Fang, 2019Fang Mitophagy inhibit Alzheimer disease.Autophagy. 1112-1114Crossref (2) Furthermore, shown promote neurite outgrowth development, regulating dendritic arborization, long-term potentiation learning, memory (Gao 2010Gao W.Y. Mao Y.W. Gräff Guan Pan Mak Kim Su S.C. Tsai L.H. miR-134.Nature. 466: 1105-1109Crossref (585) Among 17 PARPs, them capable adding multiple ADP-ribose units (poly[ADP-ribosyl]ation) PARylation; they PARP1, PARP2, PARP5a (tankyrase 1), PARP5b 2) (Leung, 2017Leung A.K.L. PARPs.Curr. 27: R1256-R1258Abstract Rouleau 2010Rouleau Patel Hendzel Kaufmann S.H. Poirier G.G. PARP inhibition: PARP1 beyond.Nat. 293-301Crossref (813) supports transfers first moiety lysine, arginine, glutamate, aspartate, serine residues acceptor protein, preceding ones, thereby poly(ADP-ribose) (PAR) chains (Bonfiglio 2017Bonfiglio Fontana Q. Colby Gibbs-Seymour Atanassov Bartlett Zaja Ahel Matic Serine ADP-ribosylation depends HPF1.Mol. Cell. 940: 932-940Abstract Daniels 2014Daniels Ong S.E. Leung A.K. Phosphoproteomic approach characterize mono- poly(ADP-ribosyl)ation sites Proteome Res. 13: 3510-3522Crossref (74) majority PARylation executed participates processes, DNA repair, DNA/RNA response. PAR serving signaling scaffolding element 2016bFang Scheibye-Knudsen Chua Nuclear damage signalling mitochondria ageing.Nat. 308-321Crossref Leung, Scholar), e.g., stabilization repair forks, catalytic single-strand breaks, bulky lesions, double-strand breaks (DSBs) (Ray Chaudhuri Nussenzweig, 2017Ray Nussenzweig chromatin remodelling.Nat. 18: 610-621Crossref (33) However, excessive activation trigger death, termed parthanatos, formation triggers release apoptosis-inducing factor (AIF) cytosolic side outer membrane. AIF then translocated nucleus activate macrophage migration inhibitory (MIF, nuclease), finally results MIF-dependent chromatinolysis (Wang 2011Wang N.S. Haince J.F. Kang David K.K. Andrabi Dawson T.M. Poly(ADP-ribose) binding polymerase-1-dependent (parthanatos).Sci. 4: ra20Crossref (198) 2016Wang An Umanah G.K. Park Nambiar Eacker S.M. B. Bao Harraz M.M. Chang al.A nuclease induced polymerase-1.Science. 354Crossref (65) 2002Yu S.W. Poitras M.F. Coombs Bowers W.J. Federoff Mediation factor.Science. 297: 259-263Crossref (1386) Notably, depletion PAR-dependent hexokinase activity, resulting dysfunctional likely (Andrabi 2014Andrabi Stevens Karuppagounder Gagné polymerase-dependent energy occurs glycolysis.Proc. Natl. Acad. Sci. USA. 111: 10209-10214Crossref (128) Fouquerel 2014Fouquerel Goellner E.M. Barbi Moura Feinstein Wheeler Romero al.ARTD1/PARP1 negatively inhibiting depletion.Cell Rep. 1819-1831Abstract loss, hyperactivation PARP1-induced induce loss accelerated 2016aFang Kassahun Shamanna Kalyanasundaram Bollineni R.C. Wilson M.A. al.NAD(+) replenishment improves lifespan ataxia telangiectasia repair.Cell 24: 566-581Abstract view detrimental endogenous exogenous excitotoxicity, ischemia-reperfusion injury, inflammation-induced (Yu Scholar) targeting provide therapeutic strategies diseases. catalyzes Ca2+-responsive messenger cyclic (cADPR) use immunity, inflammation, even social behaviors (Jin 2007Jin H.X. Hirai Torashima Nagai Lopatina O. Shnayder N.A. Noda Seike behaviour oxytocin secretion.Nature. 446: 41-45Crossref (395) type II form (i.e., C-terminal) (with domain facing cytosol) (Liu 2017Liu Zhao W.H. Y.N. Z.Y. Fang S.L. Cytosolic interaction CIB1 levels.Proc. 2008Liu Graeff Kriksunov I.A. Lam Hao Conformational closure site (dagger) (double dagger).Biochemistry. 47: 13966-13973Crossref age-dependent increase CD38, contribute impaired function lymphocyte differentiation antigen, (Mizuguchi 1995Mizuguchi Otsuka Sato Ishii Kon Nishina Katada Ikeda localization antigen brain.Brain 1995; 697: 235-240Crossref (57) knockout show significant protection against ischemic (Long 2017Long J.H. Klimova Fowler Loane D.J. Kristian despite high level poly-ADP-ribosylation.Neurochem. 42: 283-293Crossref (1) SARM1 recognized cleaves ADPR, cADPR domain. It non-brain tissues, liver (Essuman 2017Essuman Summers D.W. X. DiAntonio Milbrandt toll/interleukin-1 possesses intrinsic cleavage promotes pathological axonal degeneration.Neuron. 93: 1334-1343Abstract (18) An, 2018Pan Z.G. X.S. deletion restrains NAFLD fat diet (HFD) reducing lipid accumulation.Biochem. Biophys. 2018; 498: 416-423Crossref (7) cyclase glycohydrolase activities, estimated Michaelis constant (Km) 24 μM, similar other known NAD+-consumers (PARP1, 50–97 μM; SIRT1, 94–96 15–25 μM) (Cantó 2015Cantó Menzies K.J. Auwerx homeostasis: balancing act nucleus.Cell 22: 31-53Abstract degeneration therefore potential target intervention holds signal, clear. SIRTS, CD38/CD157, compete each consume NAD+; thus, enzyme impair activities enzymes. interrelationships reviewed recently equilibrium synthesis, consumption, cytoplasm, nucleus, Golgi apparatus. Two expression subcellular-specific NAD+-synthetic transporters metabolites. convert NAD+. include

Язык: Английский

Процитировано

551

NAD+ homeostasis in health and disease DOI
Elena Katsyuba, Mario Romani, Dina Hofer

и другие.

Nature Metabolism, Год журнала: 2020, Номер 2(1), С. 9 - 31

Опубликована: Янв. 20, 2020

Язык: Английский

Процитировано

466

Mitochondrial Dysfunction and Mitophagy in Parkinson’s Disease: From Mechanism to Therapy DOI

Ana Belén Malpartida,

Matthew G Williamson, Derek P. Narendra

и другие.

Trends in Biochemical Sciences, Год журнала: 2020, Номер 46(4), С. 329 - 343

Опубликована: Дек. 13, 2020

Язык: Английский

Процитировано

356

Mitophagy and Neuroprotection DOI
Guofeng Lou, Konstantinos Palikaras, Sofie Lautrup

и другие.

Trends in Molecular Medicine, Год журнала: 2019, Номер 26(1), С. 8 - 20

Опубликована: Июль 30, 2019

Язык: Английский

Процитировано

352

Autophagy in Parkinson's Disease DOI Creative Commons
Xu Hou, Jens O. Watzlawik, Fabienne C. Fiesel

и другие.

Journal of Molecular Biology, Год журнала: 2020, Номер 432(8), С. 2651 - 2672

Опубликована: Фев. 13, 2020

Impaired protein homeostasis and accumulation of damaged or abnormally modified are common disease mechanisms in many neurodegenerative disorders, including Parkinson's (PD). As one the major degradation pathways, autophagy plays a pivotal role maintaining effective turnover proteins organelles cells. Several decades research efforts led to insights into potential contribution impaired machinery α-synuclein degeneration dopaminergic neurons, two features PD pathology. In this review, we summarize recent pathological, genetic, mechanistic findings that link defective with pathogenesis human patients, animals, cellular models discuss current challenges field.

Язык: Английский

Процитировано

279

Regulation and Function of Mitochondria–Lysosome Membrane Contact Sites in Cellular Homeostasis DOI
Yvette C. Wong, Soojin Kim, Wesley Peng

и другие.

Trends in Cell Biology, Год журнала: 2019, Номер 29(6), С. 500 - 513

Опубликована: Март 18, 2019

Язык: Английский

Процитировано

259

Role of NAD+ in regulating cellular and metabolic signaling pathways DOI Creative Commons

Sara Amjad,

Sabah Nisar, Ajaz A. Bhat

и другие.

Molecular Metabolism, Год журнала: 2021, Номер 49, С. 101195 - 101195

Опубликована: Фев. 18, 2021

Nicotinamide adenine dinucleotide (NAD+), a critical coenzyme present in every living cell, is involved myriad of metabolic processes associated with cellular bioenergetics. For this reason, NAD+ often studied the context aging, cancer, and neurodegenerative disorders. Cellular depletion compromised adaptive stress responses, impaired neuronal plasticity, DNA repair, senescence. Increasing evidence has shown efficacy boosting levels using precursors various diseases. This review provides comprehensive understanding into role aging other pathologies discusses potential therapeutic targets. An alteration NAD+/NADH ratio or pool size can lead to derailment biological system contribute disorders, tumorigenesis. Due varied distribution different locations within cells, direct NAD+-dependent humans remains unestablished. In regard, longitudinal studies are needed quantify its related metabolites. Future research should focus on measuring fluxes through pathways synthesis degradation.

Язык: Английский

Процитировано

207