bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Апрель 29, 2023
ABSTRACT
Species
are
seen
as
the
fundamental
unit
of
biotic
diversity,
and
thus
their
delimitation
is
crucial
for
defining
measures
diversity
assessments
studying
evolution.
Differences
between
species
have
traditionally
been
associated
with
variation
in
morphology.
And
yet,
discovery
cryptic
suggests
that
evolution
distinct
lineages
does
not
necessarily
involve
trait
differences.
Here,
we
analyze
1,684,987
variant
sites
over
4000
genes
more
than
400
samples
to
show
how
a
tropical
montane
plant
lineage
(
Geonoma
undata
complex)
composed
numerous
unrecognized
genetic
groups
morphologically
distinct.
We
find
11
14
clades
do
correspond
three
currently
recognized
species.
Most
genetically
independent
geographic
distance
topography
most
important
factors
determining
this
divergence.
This
match
model
an
adaptive
radiation,
but
instead,
constitutes
first
example
hyper-cryptic
radiation
mountains.
Basin Research,
Год журнала:
2023,
Номер
35(5), С. 1674 - 1717
Опубликована: Апрель 17, 2023
Abstract
Miocene
strike‐slip
tectonics
was
responsible
for
creating
and
closing
short‐lived
(ca.
6
Ma)
passages
the
emergence
of
isolated
topography
in
Northern
Andes.
These
geological
events
likely
influenced
migration
and/or
isolation
biological
populations.
To
better
understand
paleogeography
hinterland
foreland
regions
Andes,
we
conducted
a
source‐to‐sink
approach
Magdalena
Basin.
This
basin
is
located
between
Central
Eastern
Cordilleras
Colombia
contains
an
ample
record,
which
includes
Lower
fine‐grained
strata
Middle
to
Pliocene
coarsening‐up
strata.
Our
study
presents
new
data
set
that
detrital
U–Pb
zircon
ages
(15
samples),
sandstone
petrography
(45
samples)
low‐temperature
thermochronology
from
Southern
Cordillera
(19
dates);
together
with
previously
published
were
used
construct
paleogeographical
model
The
evolution
Basin
during
characterized
by
playa
permanent
lake
systems
at
ca.
17.5
Ma,
may
be
related
marine
incursion
into
NW
South
America
western
Amazonia.
appearance
Eocene
volcanic
sources
Honda
Group
after
16
Ma
suggests
development
fluvial
passages,
connected
Pacific
Amazonia
Caribbean
regions.
synchronous
time
exhumation
topographic
growth
10
transition
lacustrine
deposition
Late
deformation
promoted
oblique
plate
convergence
collision
Panamá‐Chocó
Block
explains
along‐strike
fragmentation
Cordillera.
Cold Spring Harbor Perspectives in Biology,
Год журнала:
2024,
Номер
17(3), С. a041452 - a041452
Опубликована: Май 1, 2024
Neotropical
ecosystems
are
renowned
for
numerous
examples
of
adaptive
radiation
in
both
plants
and
animals
resulting
high
levels
biodiversity
endemism.
However,
we
still
lack
a
comprehensive
review
the
abiotic
biotic
factors
that
contribute
to
these
radiations.
To
fill
this
gap,
delve
into
geological
history
region,
including
role
tectonic
events
such
as
Andean
uplift,
formation
Isthmus
Panama,
emergence
Guiana
Brazilian
Shields.
We
also
explore
ecological
opportunities
created
by
new
habitats,
well
key
innovations,
novel
feeding
strategies
or
reproductive
mechanisms.
discuss
different
radiation,
classic
ones
like
Darwin's
finches
Anolis
lizards,
more
recent
bromeliads
lupines.
Finally,
propose
radiations
mediated
interactions
their
context.
By
doing
so,
provide
insights
complex
interplay
contributed
remarkable
diversity
life
Neotropics
highlight
importance
region
understanding
origins
biodiversity.
Geological Journal,
Год журнала:
2024,
Номер
59(7), С. 1968 - 1997
Опубликована: Май 27, 2024
Plutonic
rocks
typically
have
negligible
matrix
porosity
and
permeability.
However,
fractures
mineral
alterations
create
storage
space
flow
pathways
that
turn
plutonic
into
fluid
reservoirs.
Despite
significant
hydrocarbon
discoveries,
naturally
fractured
reservoirs
in
been
poorly
studied.
In
most
Colombian
basins,
the
crystalline
basement
has
undergone
multiple
deformational
events
is
thrust
over
Cretaceous
to
Cenozoic
source
reservoir
of
conventional
petroleum
system.
This
structural
configuration
ideal
for
migration
oil
a
basement.
A
multiscale
fracture
analysis,
including
field,
petrographical
petrophysical
techniques
was
conducted
on
Permian
Jurassic
Upper
Magdalena
Basin
order
understand
controls
brittle
deformation,
development
networks
their
potential
form
The
results
indicate
protolith
textures
structures,
magmatic
mylonitic
foliation,
favours
fracturing.
Dykes
exhibit
higher
density
(7–48
fractures/m),
(mean
=
0.4%)
permeability
125,818.75
mD)
than
host
rock
(2–25
fractures/m;
0.23%;
12,066.09
mD).
Intersection
zones
from
regional
faults,
are
characterized
by
highest
lineament
intensity.
Our
suggest
dyke
swarms
interacting
damage
can
significantly
enhance
quality
providing
rock.
Abstract
We
use
new
and
published
detrital
zircon
U‐Pb
data
(
n
>
10,000)
from
Oligocene‐Pliocene
strata
of
intermontane
basins
the
western
Colombian
Andes
surrounding
regions
to
study
evolution
sedimentary
systems
during
transition
arc
collision/accretion
subduction.
Our
database
indicates
a
shift
compartmentalized
basin
architecture,
locally
fed
by
transverse
drainages,
toward
one
with
enhanced
connectivity
longitudinal
sediment
dispersal
Middle‐Late
Miocene.
These
events
were
accompanied
end
local
marine
influence
on
depocenters
progressive
uplift
flanking
Cordilleras
as
they
became
continuous
topographic
features.
Post‐Pliocene
transient
disruption
rivers
was
caused
damming
valley‐filling,
attributed
volcaniclastic
flows.
interpret
inherent
segmentation
strike‐slip
faults
their
morphological
expressions
primary
controls
depocenter
Early‐Middle
Miocene
collision/accretion.
The
subsequent
subduction
tectonic
continental
margin
triggered
asymmetrical
inversion
in
Andes.
modern
rugged
morphology
northern
region
is
arguably
associated
widespread
due
upper
plate
cooling
strengthening
shallow
Coiba
microplate.
Conversely,
wide
flat
aggradational
southern
area
interpreted
result
incomplete
dominance
tectonics.
“normal”
Malpelo
microplate
beneath
Colombia
might
be
linked
higher
heat
flow
localized
deformation
intra‐
back‐arc
regions.
Journal of Biogeography,
Год журнала:
2025,
Номер
unknown
Опубликована: Май 19, 2025
ABSTRACT
Aim
The
centropogonid
clade
comprising
Burmeistera
H.Karst.
&
Triana,
Centropogon
C.Presl
and
Siphocampylus
Pohl
stands
out
as
one
of
the
most
rapid
plant
radiations
in
Neotropics.
We
investigated
origin
diversification
to
enhance
our
understanding
fruit
evolution
other
non‐floral
traits
genus.
By
exploring
interplay
morphological,
ecological
geographical
factors,
we
sought
provide
new
insights
into
how
these
elements
have
influenced
evolutionary
trajectory
.
Location
Time
Period
Late
Pliocene
present.
Taxon
Triana
(Lobelioideae:
Campanulaceae).
Methods
Using
Hyb‐Seq
data
from
329
nuclear
loci,
reconstructed
a
phylogenetic
tree
using
maximum
likelihood
RAxML
calibrated
final
with
prior
age
estimates
for
Lobelioideae.
Additionally,
estimated
species
ASTRAL
performed
various
comparative
analyses
explore
historical
biogeography
across
Results
originated
Western
Cordillera
Colombian
Andes,
dispersing
rest
Northern
Andes
Central
America
between
Mid‐Pleistocene.
Inflated
fruits
evolved
multiple
times
genus,
their
distribution
varying
by
region
but
reaching
highest
proportion
eastern
slopes
Andes.
Higher
elevations
larger
sizes
both
increased
diversification,
especially
late‐branching
characterised
inflated
berries
climbing
habit,
which
underscores
role
driving
diversification.
Main
Conclusions
Studies
diverse
overlooked
taxa,
such
,
can
greatly
aid
ecology
Neotropical
cloud
forest
ecosystems.
Molecular Phylogenetics and Evolution,
Год журнала:
2023,
Номер
190, С. 107954 - 107954
Опубликована: Окт. 28, 2023
Species
are
seen
as
the
fundamental
unit
of
biotic
diversity,
and
thus
their
delimitation
is
crucial
for
defining
measures
diversity
assessments
studying
evolution.
Differences
between
species
have
traditionally
been
associated
with
variation
in
morphology.
And
yet,
discovery
cryptic
suggests
that
evolution
distinct
lineages
does
not
necessarily
involve
morphological
differences.
Here,
we
analyze
1,684,987
variant
sites
over
4,000
genes
more
than
400
samples
to
show
how
a
tropical
montane
plant
lineage
(Geonoma
undata
complex)
composed
numerous
unrecognized
genetic
groups
morphologically
distinct.
We
find
11
14
clades
do
correspond
three
currently
recognized
species.
Most
genetically
different
geographic
distance
topography
most
important
factors
determining
this
divergence.
The
structure
match
its
variation.
Instead,
complex
constitutes
first
example
hyper-cryptic
radiation
mountains.
Frontiers of Biogeography,
Год журнала:
2024,
Номер
16(1)
Опубликована: Фев. 6, 2024
The
longstanding
view
of
Neotropical
mountain
uplift
as
a
promoter
species
diversification
has
become
commonplace
in
the
last
decades
and
could
benefit
from
more
specific
Earth-Life
evolution
associations.
We
now
know
that
formation
contributed
to
outstanding
levels
richness
endemism
mountains.
Nonetheless,
we
are
lacking
conceptual
empirical
frameworks
where
geological
biological
processes
causally
linked
through
testable
hypotheses.
In
this
perspective,
present
volcanic
activity
Neotropics,
not
phenomena
occurring
“on
top
of”
uplift,
latter
being
biogeographical
interest,
but
rather
directly
impact
biodiversity
themselves
phenomenon
interest.
Volcanoes
deserve
attention
because
their
effects
on
landscape
generate
predictable
process
counterparts
can
be
integrated
into
models
enabling
hypothesis
testing.
review
examples
literature
emphasizing
spatio-temporal
scale
volcanism’s
predicted
recorded
biodiversity.
illustrate
our
perspective
by
two
recent
study
cases,
focusing
wax
palms
passerine
birds.
first
one,
palm
genomic
sampling
was
used
test
2
hypotheses:
northern
Andes
have
been
disconnected
past
connected
rapid
repeated
eruptions
caldera-forming
Colombian
Massif
fostering
episodic
dispersal,
or
alternatively,
they
always
continuous
gradually
uplifted
hosting
dispersal
time.
broadly
same
area,
genetic
phenotypic
data
revealed
existence
hybrid
zone
between
warbler
genus
Myioborus.
Because
hybridization
is
likely
younger
than
activity,
topographic
connection
spurred
volcanism
also
enabled
secondary
contact
previously
isolated
species,
merits
formal
Altogether,
emphasize
pertinence
record
offering
opportunities
for
evaluation
hypotheses
context
mountains
singularly
outsized
Abstract
The
Andes
are
a
major
dispersal
barrier
for
lowland
rain
forest
plants
and
animals,
yet
hundreds
of
tree
species
distributed
on
both
sides
the
northern
Andes,
raising
questions
about
how
influenced
their
biogeographic
histories
population
genetic
structure.
To
explore
these
questions,
we
generated
standardized
datasets
thousands
SNPs
from
paired
populations
49
co‐distributed
in
communities
located
Panama
Amazonian
Ecuador
calculated
diversity
(
π
)
absolute
divergence
d
XY
within
between
populations,
respectively.
We
predicted
(1)
higher
ancestral
source
region
(east
or
west
Andes)
each
taxon
(2)
correlation
statistics
with
attributes,
including
elevational
range
life‐history
strategy.
found
that
was
putative
regions,
possibly
reflecting
founder
events
during
colonization.
little
support
relationship
attributes
except
limits
exhibited
,
implying
older
times.
One
possible
explanation
this
pattern
is
through
mountain
passes
declined
importance
relative
to
via
alternative
routes
as
experienced
uplift.
no
difference
mean
Central
America
Amazon.
Overall,
our
results
suggest
across
has
left
enduring
signatures
structure
widespread
trees.
outline
additional
hypotheses
be
tested
species‐specific
case
studies.
American Journal of Botany,
Год журнала:
2024,
Номер
111(4)
Опубликована: Апрель 1, 2024
Abstract
Decades
of
empirical
research
have
revealed
how
the
geological
history
our
planet
shaped
plant
evolution
by
establishing
well‐known
patterns
(e.g.,
mountain
uplift
resulted
in
high
rates
diversification
and
replicate
radiations
montane
taxa).
This
follows
a
traditional
approach
where
botanical
data
are
interpreted
light
events.
In
this
synthesis,
I
instead
describe
integrating
natural
history,
phylogenetics,
population
genetics,
can
be
applied
alongside
geology
paleontology
to
inform
understanding
past
climatic
processes.
conceptual
shift
aligns
with
goals
emerging
field
geogenomics.
neotropics,
geogenomics
is
powerful
tool
for
reciprocal
exploration
two
long
standing
questions
biology
geology:
dynamic
landscape
region
came
it
richest
flora.
Current
challenges
that
specific
analytical
approaches
discussed.
scale
at
which
various
addressed
from
biological
what
makes
some
groups
plants
excellent
model
systems
research.
Although
discussed
reference
recommendations
given
here
should
expanded
exploring
long‐standing
on
earth
evolved
use
DNA.