Cover crop-driven shifts in soil microbial communities could modulate early tomato biomass via plant-soil feedbacks DOI Creative Commons
Micaela Tosi,

John Drummelsmith,

Dasiel Obregón

и другие.

Scientific Reports, Год журнала: 2022, Номер 12(1)

Опубликована: Июнь 1, 2022

Abstract Sustainable agricultural practices such as cover crops (CCs) and residue retention are increasingly applied to counteract detrimental consequences on natural resources. Since agriculture affects soil properties partly via microbial communities, it is critical understand how these respond different management practices. Our study analyzed five CC treatments (oat, rye, radish, rye-radish mixture no-CC) two crop managements (retention/R+ or removal/R−) in an 8-year diverse horticultural rotation trial from ON, Canada. effects were small but stronger than those of management. Radish-based CCs tended be the most beneficial for both abundance richness, yet fungal evenness. species, particular also shaped and, a lesser extent, prokaryotic community composition. Crop residues modulated bacterial evenness (i.e., more sensitive R− R+), well taxa. Several structure features (e.g., composition, taxa within Actinobacteria, Firmicutes Ascomycota), some affected by CCs, correlated with early biomass production following tomato crop. suggests that, whereas mid-term small, they need better understood could influencing cash productivity plant-soil feedbacks.

Язык: Английский

Life and death in the soil microbiome: how ecological processes influence biogeochemistry DOI
Noah W. Sokol, Eric Slessarev, Gianna L. Marschmann

и другие.

Nature Reviews Microbiology, Год журнала: 2022, Номер 20(7), С. 415 - 430

Опубликована: Фев. 28, 2022

Язык: Английский

Процитировано

652
Heterotrophic nitrification and aerobic denitrification process: Promising but a long way to go in the wastewater treatment DOI
Hai-Peng Xi, Xiangtong Zhou, Muhammad Arslan

и другие.

The Science of The Total Environment, Год журнала: 2021, Номер 805, С. 150212 - 150212

Опубликована: Сен. 10, 2021

Язык: Английский

Процитировано

162
Nitrification and beyond: metabolic versatility of ammonia oxidising archaea DOI Creative Commons

Chloë L. Wright,

Laura E. Lehtovirta‐Morley

The ISME Journal, Год журнала: 2023, Номер 17(9), С. 1358 - 1368

Опубликована: Июль 14, 2023

Ammonia oxidising archaea are among the most abundant living organisms on Earth and key microbial players in global nitrogen cycle. They carry out oxidation of ammonia to nitrite, their activity is relevant for both food security climate change. Since discovery nearly 20 years ago, major insights have been gained into carbon metabolism, growth preferences mechanisms adaptation environment, as well diversity, abundance environment. Despite significant strides forward through cultivation novel omics-based approaches, there still many knowledge gaps metabolism which enable them adapt microorganisms typically considered metabolically streamlined highly specialised. Here we review physiology archaea, with focus aspects metabolic versatility regulation, discuss these traits context nitrifier ecology.

Язык: Английский

Процитировано

47
Ammonia-oxidizing bacteria and archaea exhibit differential nitrogen source preferences DOI
Wei Qin, Stephany P. Wei, Yue Zheng

и другие.

Nature Microbiology, Год журнала: 2024, Номер 9(2), С. 524 - 536

Опубликована: Янв. 31, 2024

Язык: Английский

Процитировано

34
Ammonia-oxidizing archaea and complete ammonia-oxidizing Nitrospira in water treatment systems DOI Creative Commons
Sarah Al-Ajeel, Emilie Spasov,

Laura A. Sauder

и другие.

Water Research X, Год журнала: 2022, Номер 15, С. 100131 - 100131

Опубликована: Март 14, 2022

Nitrification, the oxidation of ammonia to nitrate via nitrite, is important for many engineered water treatment systems. The sequential steps this respiratory process are carried out by distinct microbial guilds, including ammonia-oxidizing bacteria (AOB) and archaea (AOA), nitrite-oxidizing (NOB), newly discovered members genus Nitrospira that conduct complete (comammox). Even though all these nitrifiers have been identified within systems, their relative contributions nitrogen cycling poorly understood. Although AOA contribute nitrification in wastewater plants, they generally outnumbered AOB. In contrast, comammox typically dominate relatively low environments such as drinking treatment, tertiary aquaculture/aquarium filtration. Studies focus on abundance oxidizers may misconstrue actual role nitrifying guilds play a system. Understanding which active useful further optimization systems rely removal. This review highlights known distributions suggests future research directions will help assess identify factors influence activity.

Язык: Английский

Процитировано

59
Determining Factors for Nitrite Accumulation in an Acidic Nitrifying System: Influent Ammonium Concentration, Operational pH, and Ammonia-Oxidizing Community DOI
Jia Meng, Zhetai Hu, Zhiyao Wang

и другие.

Environmental Science & Technology, Год журнала: 2022, Номер 56(16), С. 11578 - 11588

Опубликована: Июль 25, 2022

Acidic nitrification is attracting wide attention because it can enable robust suppression of nitrite-oxidizing bacteria (NOB) in wastewater treatment. This study reports a comprehensive assessment the novel acidic process to identify key factors that govern stable nitrite accumulation. A laboratory-scale moving-bed biofilm reactor receiving low-alkalinity was continuously operated under conditions (pH < 6) for around two years, including nine stages varying influent and operational conditions. The results revealed accumulation related three factors, i.e., ammonium concentration, operating pH, ammonia-oxidizing microbial community. These impact by altering situ concentration free nitrous acid (FNA), which potent inhibitor NOB. critical FNA approximately one part per million (ppm, ∼1 mg HNO2-N/L), above stably maintained an nitrifying system. findings this suggest via ammonia oxidation be range conditions, as long ppm-level established. Taking low-strength mainstream (40–50 NH4+-N/L) with limited alkalinity example, experimentally demonstrated at pH 4.35, 2.3 ± 0.6 HNO2-N/L attained. Under these Candidatus Nitrosoglobus became only oxidizer detectable 16S rRNA gene sequencing. deepen our understanding systems, informing further development treatment technologies.

Язык: Английский

Процитировано

57
Phylogenetic divergence and adaptation of Nitrososphaeria across lake depths and freshwater ecosystems DOI Open Access
Minglei Ren, Jianjun Wang

The ISME Journal, Год журнала: 2022, Номер 16(6), С. 1491 - 1501

Опубликована: Янв. 28, 2022

Язык: Английский

Процитировано

38
Into the microbial niche DOI Creative Commons
Lucie Malard, Antoine Guisan

Trends in Ecology & Evolution, Год журнала: 2023, Номер 38(10), С. 936 - 945

Опубликована: Май 24, 2023

The environmental niche concept describes the distribution of a taxon in environment and can be used to understand community dynamics, biological invasions, impact changes. uses applications are still restricted microbial ecology, largely due complexity systems associated methodological limitations. development shotgun metagenomics metatranscriptomics opens new ways investigate by focusing on metabolic within space. Here, we propose framework, which, defining fundamental realised microorganisms, has potential not only provide novel insights into habitat preferences metabolism associated, but also inform plasticity, shifts, invasions.

Язык: Английский

Процитировано

36
How to Provide Nitrite Robustly for Anaerobic Ammonium Oxidation in Mainstream Nitrogen Removal DOI
Kaichong Wang, Li Jia, Xin Gu

и другие.

Environmental Science & Technology, Год журнала: 2023, Номер 57(51), С. 21503 - 21526

Опубликована: Дек. 14, 2023

Innovation in decarbonizing wastewater treatment is urgent response to global climate change. The practical implementation of anaerobic ammonium oxidation (anammox) treating domestic the key reconciling carbon-neutral management with sustainable development. Nitrite availability prerequisite anammox reaction, but how achieve robust nitrite supply and accumulation for mainstream systems remains elusive. This work presents a state-of-the-art review on recent advances anammox, paying special attention available pathways (forward-going (from nitrite) backward-going nitrate nitrite)), controlling strategies, physiological ecological characteristics functional microorganisms involved supply. First, we comprehensively assessed nitrite-oxidizing bacteria control methods, outlining that these technologies are transitioning possessing multiple selective pressures (such as intermittent aeration membrane-aerated biological reactor), integrating side stream free ammonia/free nitrous acid suppression recirculated sludge treatment), maintaining high activity ammonia-oxidizing competing oxygen bacteria. We then highlight emerging strategies supply, including production driven by novel microbes (ammonia-oxidizing archaea complete ammonia bacteria) reduction (partial denitrification nitrate-dependent methane oxidation). resources requirement different analyzed, hybrid pathway combining partial nitrification encouraged. Moreover, data-driven modeling process well proactive microbiome proposed hope achieving application. Finally, existing challenges further perspectives highlighted, i.e., investigation nitrite-supplying bacteria, scaling-up from laboratory under real conditions, stable performance fundamental insights this aim inspire advance our understanding about provide robustly shed light important obstacles warranting settlement.

Язык: Английский

Процитировано

30
Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira DOI Creative Commons
Yan Zhang, Tao Liu, Mengmeng Li

и другие.

The ISME Journal, Год журнала: 2023, Номер 17(7), С. 993 - 1003

Опубликована: Апрель 17, 2023

The recent discovery of Nitrospira species capable complete ammonia oxidation (comammox) in non-marine natural and engineered ecosystems under mesothermal conditions has changed our understanding microbial nitrification. However, little is known about the occurrence comammox bacteria or their ability to survive moderately thermal and/or hyperthermal habitats. Here, we report wide distribution five terrestrial hot springs at temperatures ranging from 36 80°C provide metagenome-assembled genomes 11 new strains. Interestingly, identification dissimilatory nitrate reduction ammonium (DNRA) thermophilic lineages suggests that they have versatile ecological functions as both sinks sources ammonia, contrast described mesophilic lineages, which lack DNRA pathway. Furthermore, situ expression key genes associated with nitrogen metabolism, adaptation, oxidative stress confirmed studied contribution nitrification these environments. Additionally, smaller genome size higher GC content, less polar more charged amino acids usage profiles, a large number heat shock proteins compared strains presumably confer tolerance stress. These novel insights into occurrence, metabolic activity, adaptation habitats further expand global significant implications for how unique microorganisms evolved strategies.

Язык: Английский

Процитировано

25