Plant–microbiome interactions: from community assembly to plant health

Nature Reviews Microbiology, Год журнала: 2020, Номер 18(11), С. 607 - 621

Опубликована: Авг. 12, 2020

Язык: Английский

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Plant abiotic stress response and nutrient use efficiency

Science China Life Sciences, Год журнала: 2020, Номер 63(5), С. 635 - 674

Опубликована: Март 31, 2020

Язык: Английский

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A practical guide to amplicon and metagenomic analysis of microbiome data

Protein & Cell, Год журнала: 2020, Номер 12(5), С. 315 - 330

Опубликована: Май 11, 2020

Abstract Advances in high-throughput sequencing (HTS) have fostered rapid developments the field of microbiome research, and massive datasets are now being generated. However, diversity software tools complexity analysis pipelines make it difficult to access this field. Here, we systematically summarize advantages limitations methods. Then, recommend specific for amplicon metagenomic analyses, describe commonly-used databases, help researchers select appropriate tools. Furthermore, introduce statistical visualization methods suitable analysis, including alpha- beta-diversity, taxonomic composition, difference comparisons, correlation, networks, machine learning, evolution, source tracing, common styles informed choices. Finally, a step-by-step reproducible guide is introduced. We hope review will allow carry out data more effectively quickly order efficiently mine biological significance behind data.

Язык: Английский

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Microbiome-Mediated Stress Resistance in Plants

Trends in Plant Science, Год журнала: 2020, Номер 25(8), С. 733 - 743

Опубликована: Апрель 25, 2020

Язык: Английский

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Soil microbiomes and one health

Nature Reviews Microbiology, Год журнала: 2022, Номер 21(1), С. 6 - 20

Опубликована: Авг. 23, 2022

Язык: Английский

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Linking Plant Secondary Metabolites and Plant Microbiomes: A Review

Frontiers in Plant Science, Год журнала: 2021, Номер 12

Опубликована: Март 2, 2021

Plant secondary metabolites (PSMs) play many roles including defense against pathogens, pests, and herbivores; response to environmental stresses, mediating organismal interactions. Similarly, plant microbiomes participate in of the above-mentioned processes directly or indirectly by regulating metabolism. Studies have shown that plants can influence their microbiome secreting various and, turn, may also impact metabolome host plant. However, not much is known about communications between interacting partners phenotypic changes. In this article, we review patterns potential underlying mechanisms interactions PSMs microbiomes. We describe recent developments analytical approaches methods field. The applications these new increased our understanding relationships Though current studies primarily focused on model organisms, results obtained so far should help future agriculturally important facilitate development manipulate PSMs–microbiome with predictive outcomes for sustainable crop productions.

Язык: Английский

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Specialized metabolic functions of keystone taxa sustain soil microbiome stability

Microbiome, Год журнала: 2021, Номер 9(1)

Опубликована: Янв. 31, 2021

The relationship between biodiversity and soil microbiome stability remains poorly understood. Here, we investigated the impacts of bacterial phylogenetic diversity on functional traits microbiome. Communities differing in were generated by inoculating serially diluted suspensions into sterilized soil, was assessed detecting community variations under various pH levels. taxonomic features potential detected DNA sequencing.We found that communities with higher tended to be more stable, implying microbiomes are resistant perturbation. Functional gene co-occurrence network machine learning classification analyses identified specialized metabolic functions, especially "nitrogen metabolism" "phosphonate phosphinate metabolism," as keystone functions. Further annotation functions carried out specific taxa, including Nitrospira Gemmatimonas, among others.This study provides new insights our understanding relationships ecosystem highlights embedded taxa may essential for stability. Video abstract.

Язык: Английский

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A plant genetic network for preventing dysbiosis in the phyllosphere

Nature, Год журнала: 2020, Номер 580(7805), С. 653 - 657

Опубликована: Апрель 8, 2020

Язык: Английский

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Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation

Nature Plants, Год журнала: 2021, Номер 7(4), С. 481 - 499

Опубликована: Апрель 8, 2021

Язык: Английский

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Rhizosphere Microbiome Assembly and Its Impact on Plant Growth

Journal of Agricultural and Food Chemistry, Год журнала: 2020, Номер 68(18), С. 5024 - 5038

Опубликована: Апрель 7, 2020

Microorganisms colonizing the plant rhizosphere provide a number of beneficial functions for their host. Although an increasing investigations clarified great functional capabilities microbial communities, understanding precise mechanisms underlying impact microbiome assemblies is still limited. Also, not much known about various microbiome. In this review, we summarize current knowledge biotic and abiotic factors that shape as well traits are to plants growth disease-resistance. We give particular emphasis on root metabolites how contributes growth, yield, Finally, introduce new perspective novel method showing synthetic community construction provides effective approach unravel plant–microbes microbes–microbes interplays.

Язык: Английский

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