Advanced Science,
Год журнала:
2024,
Номер
unknown
Опубликована: Авг. 5, 2024
Cistrome-wide
association
studies
(CWAS)
are
pivotal
for
identifying
genetic
determinants
of
diseases
by
correlating
genetically
regulated
cistrome
states
with
phenotypes.
Traditional
CWAS
typically
develops
a
model
based
on
and
genotype
data
to
associate
predicted
The
random
effect
cistrome-wide
study
(RECWAS),
reevaluates
the
necessity
state
prediction
in
CWAS.
RECWAS
utilizes
either
linear
or
marginal
initial
feature
selection,
followed
kernel-based
aggregation
testing
is
introduced.
Through
simulations
analysis
prostate
cancer
data,
thorough
evaluation
conducted.
results
suggest
that
offers
improved
power
compared
traditional
CWAS,
additional
genomic
regions
associated
cancer.
identified
102
significant
regions,
while
found
50
many
which
validated.
Validation
encompassed
range
biological
evidence,
including
risk
signals
from
GWAS
catalog,
susceptibility
genes
DisGeNET
database,
enhancer-domain
scores.
consistently
demonstrated
performance
over
These
findings
demonstrate
benefits
incorporating
kernel
methods
into
provide
new
insights
discovery
complex
diseases.
Signal Transduction and Targeted Therapy,
Год журнала:
2024,
Номер
9(1)
Опубликована: Окт. 11, 2024
The
cascade
of
metastasis
in
tumor
cells,
exhibiting
organ-specific
tendencies,
may
occur
at
numerous
phases
the
disease
and
progress
under
intense
evolutionary
pressures.
Organ-specific
relies
on
formation
pre-metastatic
niche
(PMN),
with
diverse
cell
types
complex
interactions
contributing
to
this
concept,
adding
a
new
dimension
traditional
cascade.
Prior
metastatic
dissemination,
as
orchestrators
PMN
formation,
primary
tumor-derived
extracellular
vesicles
prepare
fertile
microenvironment
for
settlement
colonization
circulating
cells
distant
secondary
sites,
significantly
impacting
cancer
progression
outcomes.
Obviously,
solely
intervening
sites
passively
after
macrometastasis
is
often
insufficient.
Early
prediction
holistic,
macro-level
control
represent
future
directions
therapy.
This
review
emphasizes
dynamic
intricate
systematic
alterations
that
progresses,
illustrates
immunological
landscape
creation,
deepens
understanding
treatment
modalities
pertinent
metastasis,
thereby
identifying
some
prognostic
predictive
biomarkers
favorable
early
predict
occurrence
design
appropriate
combinations.
Introduction
and
Objective:
A
nomogram-based
approach
can
accurately
predict
the
outcome
of
prostate
biopsy
(PBx)
in
naïve
men
with
an
elevated
PSA
using
known
traditional
risk
factors.
However,
MRI
has
been
shown
to
be
value
before
performing
a
PBx.
This
study
aimed
clinically
significant
cancer
(csPC)
on
PBx
by
combining
clinical
factors
addition
imaging
findings
An
application
was
then
created
improve
accessibility
predicted
outcomes
aid
decision-making.
Methods:
cohort
448
biopsy-naive
PSA,
MRI,
who
underwent
transrectal
ultrasound-guided
were
included.
Age,
race,
volume,
density,
Prostate
Imaging
Reporting
&
Data
System,
digital
rectal
examination,
Gleason
score
evaluated.
CsPC
defined
as
Grade
Group
2
or
higher.
Logistical
models
aforementioned
nomogram
model
performance
10-fold
cross-validation
developed
subsequent
development.
The
calibration
plot,
ROC,
decision
curve
evaluate
performance.
Results:
Of
men,
36%
diagnosed
csPC.
mean
age
65.97
±
7.74
years,
81%
White.
12.60
13.04
ng/mL.
interaction
found,
so
stratified
above
below
67
years
age.
achieved
82%
AUC,
61%
sensitivity,
specificity,
74%
overall
accuracy.
Conclusions:
application-based
combines
for
csPC
men.
By
these
variables,
provides
powerful
predictive
tool
guiding
decision-making
discovery
Our
outperformed
predicting
(82%
AUC).
is
especially
specific
(82%)
effective
ruling
out
need
low-risk
patients.
In
addition,
development
accurate
user-friendly
increases
usefulness
urologists
patients
alike.
In
the
United
States,
Black
men
are
at
highest
risk
for
being
diagnosed
with
and
dying
from
prostate
cancer.
Given
this
disparity,
we
examined
relevant
data
to
establish
clinical
prostate-specific
antigen
(PSA)
screening
guidelines
in
States.
Cell Communication and Signaling,
Год журнала:
2024,
Номер
22(1)
Опубликована: Янв. 12, 2024
Abstract
Prostate
cancer,
as
one
of
the
most
prevalent
malignancies
in
males,
exhibits
an
approximate
5-year
survival
rate
95%
advanced
stages.
A
myriad
molecular
events
and
mutations,
including
accumulation
oncometabolites,
underpin
genesis
progression
this
cancer
type.
Despite
growing
research
demonstrating
pivotal
role
oncometabolites
supporting
various
cancers,
prostate
root
causes
their
accumulation,
especially
absence
enzymatic
remain
elusive.
Consequently,
identifying
a
tangible
therapeutic
target
poses
formidable
challenge.
In
review,
we
aim
to
delve
deeper
into
implications
oncometabolite
cancer.
We
center
our
focus
on
consequential
epigenetic
alterations
impacts
stem
cells,
with
ultimate
goal
outlining
novel
strategies.
Graphical
International Journal of Molecular Sciences,
Год журнала:
2024,
Номер
25(3), С. 1557 - 1557
Опубликована: Янв. 26, 2024
Bladder
cancer
is
the
tenth
most
common
and
a
significant
burden
on
health
care
services
worldwide,
as
it
one
of
costly
cancers
to
treat
per
patient.
This
expense
due
extensive
treatment
follow-ups
that
occur
with
invasive
procedures.
Improvement
in
both
options
quality
life
these
interventions
offer
has
not
progressed
at
rates
other
cancers,
new
alternatives
are
desperately
needed
ease
burden.
A
more
modern
approach
needs
be
taken,
urinary
biomarkers
being
positive
step
making
treatments
patient-friendly,
but
there
still
long
way
go
make
widely
available
comparable
standard
current
options.
New
targets
hit
major
signalling
pathways
upregulated
bladder
cancer,
such
PI3K/AkT/mTOR
pathway,
urgently
needed,
only
drug
approved
so
far,
Erdafitinib.
Immune
checkpoint
inhibitors
also
hold
promise,
PD-1
CDLA-4
antibody
therapies
for
use.
They
effectively
block
ligand/receptor
binding
immune
used
by
tumour
cells.
Other
avenues
must
explored,
including
repurposing
novel
biomarkers,
which
have
revolutionised
this
area
cancers.
Nature Communications,
Год журнала:
2025,
Номер
16(1)
Опубликована: Фев. 6, 2025
Sample
relatedness
is
a
major
confounder
in
genome-wide
association
studies
(GWAS),
potentially
leading
to
inflated
type
I
error
rates
if
not
appropriately
controlled.
A
common
strategy
incorporate
random
effect
related
genetic
matrix
(GRM)
into
regression
models.
However,
this
approach
challenging
for
large-scale
GWAS
of
complex
traits,
such
as
longitudinal
traits.
Here
we
propose
scalable
and
accurate
analysis
framework,
SPAGRM,
which
controls
sample
via
precise
approximation
the
joint
distribution
genotypes.
SPAGRM
can
utilize
GRM-free
models
thus
applicable
various
trait
types
statistical
methods,
including
linear
mixed
generalized
estimation
equations
hybrid
incorporating
saddlepoint
greatly
increases
accuracy
analyze
low-frequency
rare
variants,
especially
unbalanced
phenotypic
distributions.
We
also
introduce
SPAGRM(CCT)
aggregate
results
following
different
Cauchy
combination
test.
Extensive
simulations
real
data
analyses
demonstrated
that
maintains
well-controlled
serve
broadly
effective
method.
Applying
79
traits
extracted
from
UK
Biobank
primary
care
data,
identified
7,463
loci,
making
pioneering
attempt
conduct
these
Chemosensors,
Год журнала:
2024,
Номер
12(1), С. 11 - 11
Опубликована: Янв. 5, 2024
This
work
consists
of
a
study
to
detect
prostate
cancer
using
E-senses
devices
based
on
electronic
tongue
and
nose
systems.
Therefore,
two
groups
confirmed
control
patients
were
invited
participate
through
urine
exhaled
breath
samples,
where
the
group
was
categorized
as
Benign
Prostatic
Hyperplasia,
Prostatitis,
Healthy
patients.
Afterward,
samples
subsequently
classified
Pattern
Recognition
machine
learning
methods,
results
compared
clinical
history,
obtaining
92.9%
success
rate
in
PCa
samples’
classification
accuracy
by
eTongue
100%
eNose.