Science,
Год журнала:
2024,
Номер
383(6684), С. 777 - 782
Опубликована: Фев. 15, 2024
Macroecological
scaling
patterns,
such
as
between
prey
and
predator
biomass,
are
fundamental
to
our
understanding
of
the
rules
biological
organization
ecosystem
functioning.
Although
these
patterns
ubiquitous,
how
they
arise
is
poorly
understood.
To
explain
we
used
an
eco-evolutionary
predator-prey
model
parameterized
using
data
for
phytoplankton
zooplankton.
We
show
that
allometric
relationships
at
lower
levels
organization,
body-size
nutrient
uptake
predation,
give
rise
food
web
levels.
Our
predicted
macroecological
exponents
agree
well
with
observed
values
across
ecosystems.
findings
explicitly
connect
different
ecological
evolutionary
mechanisms,
yielding
testable
hypotheses
emerge.
Astrobiology,
Год журнала:
2018,
Номер
18(6), С. 779 - 824
Опубликована: Июнь 1, 2018
We
introduce
a
Bayesian
method
for
guiding
future
directions
detection
of
life
on
exoplanets.
describe
empirical
and
theoretical
work
necessary
to
place
constraints
the
relevant
likelihoods,
including
those
emerging
from
better
understanding
stellar
environment,
planetary
climate
geophysics,
geochemical
cycling,
universalities
physics
chemistry,
contingencies
evolutionary
history,
properties
as
an
emergent
complex
system,
mechanisms
driving
emergence
life.
provide
examples
how
formalism
could
guide
search
strategies,
determining
observations
prioritize
or
deciding
between
targeted
searches
larger
lower
resolution
surveys
generate
ensemble
statistics
address
methodology
constrain
prior
probability
with
without
positive
detection.
Key
Words:
Exoplanets—Biosignatures—Life
detection—Bayesian
analysis.
Astrobiology
18,
779–824.
1.
Introduction
2.
Setting
Stage:
What
Is
Life?
Biosignature?
3.
Detecting
Unknown
Biology
Worlds:
A
Framework
3.1.
Habitability
in
framework
biosignatures
4.
P(data|abiotic)
4.1.
Stellar
environment
4.2.
Climate
geophysics
4.2.1.
Coupled
tectonic–climate
models
4.2.2.
Community
GCM
projects
generating
P(data|life)
4.3.
Geochemical
4.3.1.
Anticipating
unexpected:
statistical
approaches
characterizing
atmospheres
non-Earth-like
worlds
5.
5.1.
Black-box
living
processes
5.1.1.
Type
classification
Seager
et
al.
(2013a)
5.1.1.1.
Energy
capture
(type
I)
5.1.1.2.
Biomass
II)
5.1.1.3.
Other
uses
III)
5.1.1.4.
Products
modification
gases
IV)
5.1.2.
Alternatives
type
5.1.2.1.
I,
energy
5.1.2.2.
II,
biomass
5.1.2.3.
III,
"other
uses"
5.1.2.4.
IV
5.1.3.
When
is
it
appropriate
deconstruct
black
box?
5.2.
Life
improbable
chemistry
5.3.
process
5.3.1.
coevolution
its
planet:
Earth
example
5.3.2.
Calculating
conditional
probabilities
biological
evolution
past
biogeochemical
states
5.4.
Insights
universal
biology
5.4.1.
Network
5.4.2.
Universal
scaling
laws,
applicable
other
worlds?
6.
P(life)
6.1.
P(emerge):
constraining
origins
6.2.
Biological
innovations
7.
Example:
Atmospheric
Oxygen
8.
Tuning
Search
Strategies
Based
9.
Conclusions
Acknowledgments
Author
Disclosure
Statement
References
Abbreviations
Used
Nature Communications,
Год журнала:
2020,
Номер
11(1)
Опубликована: Июнь 25, 2020
Abstract
Changes
in
global
and
regional
precipitation
regimes
are
among
the
most
pervasive
components
of
climate
change.
Intensification
rainfall
cycles,
ranging
from
frequent
downpours
to
severe
droughts,
could
cause
widespread,
but
largely
unknown,
alterations
trophic
structure
ecosystem
function.
We
conducted
multi-site
coordinated
experiments
show
how
variation
quantity
evenness
modulates
210
natural
freshwater
microcosms
(tank
bromeliads)
across
Central
South
America
(18°N
29°S).
The
biomass
smaller
organisms
(detritivores)
was
higher
under
more
stable
hydrological
conditions.
Conversely,
predators
highest
when
uneven,
resulting
top-heavy
pyramids.
These
results
illustrate
extremes
precipitation,
localized
droughts
or
flooding,
can
erode
base
food
webs,
with
negative
implications
for
stability
dynamics.
Global Ecology and Biogeography,
Год журнала:
2018,
Номер
27(8), С. 968 - 979
Опубликована: Авг. 1, 2018
Abstract
Aim
Although
the
effects
of
life
history
traits
on
population
density
have
been
investigated
widely,
how
spatial
environmental
variation
influences
for
a
large
range
organisms
and
at
broad
scale
is
poorly
known.
Filling
this
knowledge
gap
crucial
global
species
management
conservation
planning
to
understand
potential
impact
changes
multiple
species.
Location
Global.
Time
period
Present.
Major
taxa
studied
Terrestrial
amphibians,
reptiles,
birds
mammals.
Methods
We
collected
estimates
terrestrial
vertebrates,
including
364
850
5,667
7,651
contrasted
importance
predictors
using
mixed
models
tested
different
hypotheses
explain
in
four
groups.
assessed
predictive
accuracy
through
cross‐validation
mapped
partial
response
vertebrate
variables
globally.
Results
Amphibians
were
more
abundant
wet
areas
with
high
productivity
levels,
whereas
reptiles
showed
relatively
higher
densities
arid
low
stable
temperatures.
The
mammals
was
typically
temperate
intermediate
levels
productivity.
good
abilities,
pseudo‐
R
2
ranging
between
0.68
(birds)
0.83
(reptiles).
Main
conclusions
Traits
determine
most
across
species,
conditions
intraspecific
populations.
Species
traits,
resource
availability
climatic
stability
influence
These
can
be
used
predict
average
over
explore
macroecological
patterns
inform
analyses.
Ecology Letters,
Год журнала:
2018,
Номер
22(2), С. 405 - 419
Опубликована: Дек. 17, 2018
Abstract
Food
chain
theory
is
one
of
the
cornerstones
ecology,
providing
many
its
basic
predictions,
such
as
biomass
pyramids,
trophic
cascades
and
predator–prey
oscillations.
Yet,
ninety
years
into
this
theory,
conditions
under
which
these
patterns
may
occur
persist
in
nature
remain
subject
to
debate.
Rather
than
address
each
pattern
isolation,
we
propose
that
they
must
be
understood
together,
calling
for
synthesis
a
fragmented
landscape
theoretical
empirical
results.
As
first
step,
minimal
combines
long‐standing
energetic
dynamical
approaches
food
chains.
We
chart
predictions
on
concise
map,
where
two
main
regimes
emerge:
across
various
functioning
stability
metrics,
regime
characterised
by
pyramidal
other
cascade
patterns.
The
axes
map
combine
key
physiological
ecological
variables,
metabolic
rates
self‐regulation.
A
quantitative
comparison
with
data
sheds
light
conflicting
puzzles,
from
size
spectra
causes
strength.
conclude
drawing
systematic
connections
between
existing
chains,
their
stability,
crucial
step
confronting
real
ecosystems.
Mammal Review,
Год журнала:
2018,
Номер
49(2), С. 97 - 112
Опубликована: Дек. 22, 2018
Abstract
Accurate
analyses
of
the
diets
predators
are
key
to
understand
trophic
interactions
and
defining
conservation
strategies.
Diets
commonly
assessed
through
analysis
non‐invasively
collected
scats,
use
faecal
DNA
(
fDNA
)
can
reduce
species
misidentifications
that
could
lead
biased
ecological
inference.
We
review
scientific
literature
since
publication
first
paper
on
amplifying
,
in
order
assess
trends
genetic
non‐invasive
sampling
gNIS
for
predator
identification
scat‐based
diet
studies
North
American
European
terrestrial
mammalian
carnivores
(Carnivora).
quantify
error
rates
morphology‐based
identification.
then
provide
an
overview
how
applying
would
improve
research
other
areas
carnivore
ecology.
found
identity
was
verified
by
using
only
8%
400
based
scats.
The
median
percentage
false
positives
(i.e.
samples
wrongly
identified
as
belonging
target
species)
18%,
consistent
regardless
species’
body
size.
did
not
find
increasing
trend
over
time,
despite
existing
technical
capability
identify
almost
all
species.
New
directions
include
employing
high‐throughput
sequencing
HTS
metabarcoding
species,
individual
predator,
entire
assemblage
consumed
items,
microbiome
pathogens.
conclude
protocols
metagenomic
approaches
hold
great
promise
elevating
a
fundamental
cornerstone
future
ecology
biology
mammals.
Ecological Complexity,
Год журнала:
2019,
Номер
39, С. 100767 - 100767
Опубликована: Июнь 18, 2019
The
adaptive
cycle
and
its
extension
to
panarchy
(nested
cycles)
has
been
a
useful
metaphor
conceptual
model
for
understanding
long-term
dynamics
of
change
in
ecological
social–ecological
systems.
We
argue
that
cycles
are
ubiquitous
complex
systems
because
they
reflect
endogenously
generated
as
result
processes
self-organization
evolution.
synthesize
work
from
wide
array
fields
support
this
claim.
If
growth,
conservation,
collapse
renewal
endogenous
systems,
then
there
ought
be
signals
system
over
time
this.
describe
series
largely
thermodynamically
based
indicators
have
developed
purpose,
we
add
critical
heretofore
missing
component–namely,
(adaptive
at
objectively
identified
spatial
temporal
scales
nested
within
each
system,
instead
solely
the
level.
explicit
consideration
scales,
when
coupled
with
selective
indicators,
may
circumvent
need
multiple
capture
will
provide
richer
picture
trajectory
than
offered
by
single-scale
analysis.
feasible
ways
which
researchers
could
systematically
quantitatively
look
signatures
ecosystems,
rather
relying
on
qualitative
descriptions.
Nature Communications,
Год журнала:
2020,
Номер
11(1)
Опубликована: Март 10, 2020
Abstract
Regime
shifts
can
abruptly
affect
hydrological,
climatic
and
terrestrial
systems,
leading
to
degraded
ecosystems
impoverished
societies.
While
the
frequency
of
regime
is
predicted
increase,
fundamental
relationships
between
spatial-temporal
scales
their
underlying
mechanisms
are
poorly
understood.
Here
we
analyse
empirical
data
from
(
n
=
4),
marine
25)
freshwater
13)
environments
show
positive
sub-linear
size
shift
duration
systems.
Each
additional
unit
area
an
ecosystem
provides
increasingly
smaller
time
taken
for
that
system
collapse,
meaning
large
systems
tend
more
slowly
than
small
but
disproportionately
faster.
We
substantiate
these
findings
with
five
computational
models
reveal
importance
structure
in
controlling
duration.
The
imply
Earth
occur
over
‘human’
timescales
years
decades,
collapse
vulnerable
ecosystems,
such
as
Amazon
rainforest
Caribbean
coral
reefs,
may
take
only
a
few
decades
once
triggered.
It
has
long
been
hypothesized
that
aquatic
biomass
is
evenly
distributed
among
logarithmic
body
mass
size
classes.
Although
this
community
structure
observed
regionally,
mostly
plankton
groups,
its
generality
never
formally
tested
across
all
marine
life
over
the
global
ocean,
nor
have
impacts
of
humans
on
it
globally
assessed.
Here,
we
bring
together
data
at
scale
to
test
hypothesis
from
bacteria
whales.
We
find
within
most
order
magnitude
classes
indeed
remarkably
constant,
near
1
gigatonne
(Gt)
wet
weight
(1015
g),
but
and
large
mammals
are
markedly
above
below
value,
respectively.
Furthermore,
human
appear
significantly
truncated
upper
one-third
spectrum.
This
dramatic
alteration
what
possibly
life’s
largest-scale
regularity
underscores
extent
activities.
Scientific Reports,
Год журнала:
2021,
Номер
11(1)
Опубликована: Март 29, 2021
The
detection
of
causal
interactions
is
great
importance
when
inferring
complex
ecosystem
functional
and
structural
networks
for
basic
applied
research.
Convergent
cross
mapping
(CCM)
based
on
nonlinear
state-space
reconstruction
made
substantial
progress
about
network
inference
by
measuring
how
well
historical
values
one
variable
can
reliably
estimate
states
other
variables.
Here
we
investigate
the
ability
a
developed
optimal
information
flow
(OIF)
model
to
infer
bidirectional
causality
compare
that
CCM.
Results
from
synthetic
datasets
generated
simple
predator-prey
model,
data
real-world
sardine-anchovy-temperature
system
multispecies
fish
highlight
proposed
OIF
performs
better
than
CCM
predict
population
community
patterns.
Specifically,
provides
larger
gradient
inferred
interactions,
higher
point-value
accuracy
smaller
fluctuations
[Formula:
see
text]-diversity
including
their
characteristic
time
delays.
We
propose
an
threshold
maximize
in
predicting
effective
text]-diversity,
defined
as
count
model-inferred
interacting
species.
Overall
outperforms
all
models
assessing
predictive
(also
terms
computational
complexity)
due
explicit
consideration
synchronization,
divergence
diversity
events
define
sensitivity,
uncertainty
complexity.
Thus,
offers
broad
ecological
extracting
ecosystems
time-series
space-time
continuum.
accurate
species
at
any
biological
scale
organization
highly
valuable
because
it
allows
biodiversity
changes,
instance
function
climate
anthropogenic
stressors.
This
has
practical
implications
defining
management
design,
such
stock
prioritization
delineation
marine
protected
areas
derived
collective
assembly.
be
used
evaluation
design
where
should
considered
non-linear
predictability
diverse
populations
or
communities.