Abstract
Background
Calcium-activated
photoproteins
are
luciferase
variants
found
in
photocyte
cells
of
bioluminescent
jellyfish
(Phylum
Cnidaria)
and
comb
jellies
Ctenophora).
The
complete
genomic
sequence
from
the
ctenophore
Mnemiopsis
leidyi
,
a
representative
earliest
branch
animals
that
emit
light,
provided
an
opportunity
to
examine
genome
organism
uses
this
class
for
bioluminescence
look
genes
involved
light
reception.
To
determine
when
photoprotein
first
arose,
we
examined
other
early-branching
taxa.
We
combined
our
survey
with
gene
trees,
developmental
expression
patterns,
functional
protein
assays
opsins
provide
comprehensive
view
production
reception
.
Results
has
10
full-length
situated
within
two
clusters
high
conservation
maintained
due
strong
purifying
selection
concerted
evolution.
Photoprotein-like
were
also
identified
genomes
non-luminescent
sponge
Amphimedon
queenslandica
cnidarian
Nematostella
vectensis
phylogenomic
analysis
demonstrated
arose
at
base
all
animals.
Photoprotein
embryos
begins
during
gastrulation
migrating
precursors
photocytes
persists
throughout
development
canals
where
reside.
three
putative
opsin
show
they
do
not
group
well-known
bilaterian
subfamilies.
Interestingly,
transcripts
co-expressed
developing
photocytes.
Opsin
is
seen
apical
sensory
organ.
present
evidence
one
functions
as
photopigment
vitro
absorbing
wavelengths
overlap
peak
emission,
raising
hypothesis
may
be
functionally
connected
ciliary
phototransduction
cascade
Conclusions
This
study
elucidates
organization,
evolutionary
history,
introduces
novel
dual
role
both
phototransduction,
raises
possibility
linked
non-bilaterian
animal.
Chemical Reviews,
Год журнала:
2017,
Номер
117(9), С. 6500 - 6537
Опубликована: Апрель 7, 2017
Phosphorescence
is
a
phenomenon
of
delayed
luminescence
that
corresponds
to
the
radiative
decay
molecular
triplet
state.
As
general
property
molecules,
phosphorescence
represents
cornerstone
problem
chemical
physics
due
spin
prohibition
underlying
triplet-singlet
emission
and
because
its
analysis
embraces
deep
knowledge
electronic
structure.
simplest
physical
process
which
provides
an
example
spin-forbidden
transformation
with
characteristic
selectivity
magnetic
field
dependence,
being
model
also
for
more
complicated
reactions
catalysis
applications.
The
bridging
in
commonly
analyzed
by
perturbation
theory,
considers
intensity
borrowing
from
spin-allowed
transitions.
In
this
review,
we
highlight
basic
theoretical
principles
computational
aspects
estimation
various
parameters,
like
intensity,
rate
constant,
lifetime,
polarization,
zero-field
splitting,
sublevel
population.
Qualitative
are
discussed
terms
concepts
structure–activity
relationships,
donor–acceptor
interactions,
vibronic
activity,
role
spin–orbit
coupling
under
charge-transfer
perturbations.
We
illustrate
theory
highlighting
studies
classical
examples
nitrogen
oxygen,
benzene,
naphthalene
their
azaderivatives,
porphyrins,
as
well
reviewing
current
research
on
systems
electrophosphorescent
transition
metal
complexes,
nucleobases,
amino
acids.
furthermore
discuss
modern
cover
topics
applied
relevance,
design
novel
photofunctional
materials
organic
light-emitting
diodes
(OLEDs),
photovoltaic
cells,
sensors,
bioimaging.
Astrobiology,
Год журнала:
2018,
Номер
18(6), С. 663 - 708
Опубликована: Май 4, 2018
In
the
coming
years
and
decades,
advanced
space-
ground-based
observatories
will
allow
an
unprecedented
opportunity
to
probe
atmospheres
surfaces
of
potentially
habitable
exoplanets
for
signatures
life.
Life
on
Earth,
through
its
gaseous
products
reflectance
scattering
properties,
has
left
fingerprint
spectrum
our
planet.
Aided
by
universality
laws
physics
chemistry,
we
turn
Earth's
biosphere,
both
in
present
geologic
time,
analog
that
aid
search
life
elsewhere.
Considering
insights
gained
from
modern
ancient
broader
array
hypothetical
exoplanet
possibilities,
have
compiled
a
comprehensive
overview
current
understanding
potential
biosignatures,
including
gaseous,
surface,
temporal
biosignatures.
We
additionally
survey
biogenic
spectral
features
are
well
known
specialist
literature
but
not
yet
been
robustly
vetted
context
briefly
review
advances
assessing
biosignature
plausibility,
novel
methods
determining
chemical
disequilibrium
remotely
obtainable
data
assessment
tools
minimum
biomass
required
maintain
short-lived
gases
as
atmospheric
signatures.
focus
particularly
made
since
seminal
Des
Marais
et
al.
The
purpose
this
work
is
propose
new
strategies,
goal
companion
articles
series,
literature,
draw
meaningful
connections
between
seemingly
disparate
areas,
clear
way
path
forward.
Key
Words:
Exoplanets—Biosignatures—Habitability
markers—Photosynthesis—Planetary
surfaces—Atmospheres—Spectroscopy—Cryptic
biospheres—False
positives.
Astrobiology
18,
663–708.
1.
Introduction
1.1.
Requirements
1.2.
Exoplanet
definitions
1.3.
Biosignature
categories
2.
Evaluating
Planetary
Habitability
3.
Overview
Terrestrial
Modeling
Studies
3.1.
Observations
earth
3.2.
Spectral
models
3.3.
Photochemical
studies
terrestrial
3.4.
Earth
time
4.
Gaseous
Biosignatures
4.1.
4.2.
Earth-like
4.2.1.
Oxygen
(O2)
4.2.2.
Ozone
(O3)
4.2.3.
Methane
(CH4)
4.2.4.
Nitrous
oxide
(N2O)
4.2.5.
Sulfur
(DMS,
DMDS,
CH3SH)
relation
detectable
C2H6
4.2.6.
Methyl
chloride
(CH3Cl)
4.2.7.
Haze
4.2.8.
Other
4.3.
“False
positives”
biotic
O2/O3
possible
discriminators
4.4.
other
types
4.5.
Effects
host
star
photochemistry
4.6.
Impacts
flares
particle
events
5.
Surface
5.1.
Photosynthesis
5.1.1.
Principles
photosynthesis
5.1.1.1.
Relationship
band
gap
wavelength
reductant
generation
pigment
color
5.1.1.2.
Uniqueness
OP
5.1.2.
Photosynthetic
pigments
phototrophs
5.1.2.1.
Structure
5.1.2.2.
Light
absorption
5.1.3.
vegetation
“red
edge”
5.1.4.
Speculation
about
5.2.
Retinal
5.3.
Alternative
surface
biosignatures:
nonphotosynthetic
5.4.
False
positive
biosignatures
5.5.
Chiral
polarization
5.6.
Fluorescence
bioluminescence
6.
Temporal
6.1.
Oscillations
6.2.
7.
Assessing
Plausibility
7.1.
Chemical
7.2.
Biomass
estimation
7.3.
Applications
network
theory
8.
Cryptic
Biospheres:
Negatives”
Life?
9.
Prospects
Detecting
10.
Summary
Science,
Год журнала:
2010,
Номер
328(5979), С. 704 - 708
Опубликована: Май 6, 2010
From
bacteria
to
fish,
a
remarkable
variety
of
marine
life
depends
on
bioluminescence
(the
chemical
generation
light)
for
finding
food,
attracting
mates,
and
evading
predators.
Disparate
biochemical
systems
diverse
phylogenetic
distribution
patterns
light-emitting
organisms
highlight
the
ecological
benefits
bioluminescence,
with
genetic
analyses
providing
new
insights
into
mechanisms
its
evolution.
The
origins
functions
some
bioluminescent
systems,
however,
remain
obscure.
Here,
I
review
recent
advances
in
understanding
ocean
future
research
efforts
that
will
unite
molecular
details
evolutionary
relationships.
Chemical Society Reviews,
Год журнала:
2012,
Номер
42(3), С. 857 - 870
Опубликована: Ноя. 27, 2012
The
detection
of
mechanical
stress
in
polymeric
materials
through
optical
variations
has
attracted
considerable
interest
over
the
past
ten
years.
In
this
tutorial
review,
current
state
knowledge
concerning
preparation
polymers
with
mechanochromic
features
is
summarized.
Two
types
procedures
are
illustrated
and
thoroughly
discussed
along
their
respective
structure-property
relationships:
first
resides
physical
dispersion
dye
form
supramolecular
aggregates
a
preformed
polymer
matrix;
second
involves
covalent
insertion
chromophoric
units
into
macromolecule
backbone
or
side
chains.
Herein
we
review
simplicity
preparative
routes
available,
influence
properties
resulting
dye-polymer
systems,
by
focussing
on
most
illustrative
examples
described
literature.
Special
reference
made
to
stimuli-responsiveness
as
means
towards
innovative
smart
intelligent
materials.
Chemical Reviews,
Год журнала:
2018,
Номер
118(15), С. 6927 - 6974
Опубликована: Март 1, 2018
Bioluminescence
is
a
phenomenon
that
has
fascinated
mankind
for
centuries.
Today
the
and
its
sibling,
chemiluminescence,
have
impacted
society
with
number
of
useful
applications
in
fields
like
analytical
chemistry
medicine,
just
to
mention
two.
In
this
review,
molecular-orbital
perspective
adopted
explain
behind
chemiexcitation
both
chemi-
bioluminescence.
First,
uncatalyzed
thermal
dissociation
1,2-dioxetane
presented
analyzed
explain,
example,
preference
triplet
excited
product
states
increased
yield
larger
nonreactive
substituents.
The
catalyzed
fragmentation
reaction
related
details
are
then
exemplified
substituted
1,2-dioxetanone
species.
particular,
singlet
case
explained.
review
also
examines
diversity
specific
solutions
Nature
artificial
systems
difficulties
identifying
emitting
species
unraveling
color
modulation
process.
subject
excited-state
without
light
absorption
finally
discussed.
content
should
be
an
inspiration
human
design
new
molecular
expressing
unique
light-emitting
properties.
An
appendix
describing
state-of-the-art
experimental
theoretical
methods
used
study
phenomena
serves
as
complement.
Frontiers in Ecology and the Environment,
Год журнала:
2014,
Номер
12(6), С. 347 - 355
Опубликована: Авг. 1, 2014
Despite
centuries
of
use,
artificial
light
at
night
has
only
recently
been
recognized
as
a
cause
for
environmental
concern.
Its
global
extent
and
ongoing
encroachment
into
naturally
lit
ecosystems
sparked
scientific
interest
the
many
ways
in
which
it
may
negatively
affect
human
health,
societal
attitudes,
endeavors,
biological
processes.
Yet,
perhaps
because
sources
are
largely
land
based,
potential
pollution
to
interfere
with
biology
ocean
not
explored
any
detail.
There
is
little
information
on
how
affects
those
species,
behaviors,
interactions
that
informed
by
intensity,
spectra,
periodicity
natural
nighttime
marine
ecosystems.
Here,
we
provide
an
overview
pollution,
discuss
changes
physical
environment,
explore
its
role
shaping
Global Change Biology,
Год журнала:
2017,
Номер
24(3), С. 872 - 882
Опубликована: Ноя. 10, 2017
The
environmental
impacts
of
artificial
light
at
night
have
been
a
rapidly
growing
field
global
change
science
in
recent
years.
Yet,
pollution
has
not
achieved
parity
with
other
phenomena
the
level
concern
and
interest
it
receives
from
scientific
community,
government
nongovernmental
organizations.
This
is
despite
globally
widespread,
expanding
changing
nature
night-time
lighting
immediacy,
severity
phylogenetic
breath
its
impacts.
In
this
opinion
piece,
we
evidence
10
reasons
why
should
be
focus
for
research
21st
century.
Our
extend
beyond
those
concerned
principally
environment,
to
also
include
on
human
health,
culture
biodiversity
conservation
more
generally.
We
conclude
that
use
will
continue
raise
numerous
ecological,
health
cultural
issues,
but
opportunities
exist
mitigate
by
combining
novel
technologies
sound
evidence.
potential
gains
appropriate
management
far
indeed
may
play
key
role
transitioning
towards
sustainable
society.
FEMS Microbiology Letters,
Год журнала:
2019,
Номер
366(10)
Опубликована: Май 1, 2019
ABSTRACT
It
is
often
taken
for
granted
that
all
animals
host
and
depend
upon
a
microbiome,
yet
this
has
only
been
shown
small
proportion
of
species.
We
propose
span
continuum
reliance
on
microbial
symbionts.
At
one
end
are
the
famously
symbiont-dependent
species
such
as
aphids,
humans,
corals
cows,
in
which
microbes
abundant
important
to
fitness.
In
middle
may
tolerate
some
colonization
but
minimally
or
facultatively
dependent.
other
lack
beneficial
symbionts
altogether.
While
their
existence
seem
improbable,
capable
limiting
growth
bodies,
microbially
independent
lifestyle
be
favored
by
selection
under
circumstances.
There
already
evidence
several
‘microbiome-free’
lineages
represent
distantly
related
branches
animal
phylogeny.
discuss
why
these
have
received
little
attention,
highlighting
potential
contaminants,
transients,
parasites
masquerade
also
suggest
ways
explore
microbiomes
address
limitations
DNA
sequencing.
call
further
research
microbiome-free
taxa
provide
more
complete
understanding
ecology
evolution
macrobe-microbe
interactions.
Chemical Reviews,
Год журнала:
2016,
Номер
117(2), С. 758 - 795
Опубликована: Окт. 18, 2016
Photoinduced
reactions
play
an
important
role
in
the
photocycle
of
fluorescent
proteins
from
green
protein
(GFP)
family.
Among
such
processes
are
photoisomerization,
photooxidation/photoreduction,
breaking
and
making
covalent
bonds,
excited-state
proton
transfer
(ESPT).
Many
these
transformations
initiated
by
electron
(ET).
The
quantum
yields
vary
significantly,
nearly
1
for
ESPT
to
10-4-10-6
ET.
Importantly,
even
when
relatively
small,
at
conditions
repeated
illumination
overall
effect
is
significant.
Depending
on
task
hand,
photochemistry
regarded
either
as
asset
facilitating
new
applications
or
a
nuisance
leading
loss
optical
output.
phenomena
arising
due
phototransformations
include
(i)
large
Stokes
shifts,
(ii)
photoconversions,
photoactivation,
photoswitching,
(iii)
phototoxicity,
(iv)
blinking,
(v)
permanent
bleaching,
(vi)
formation
long-lived
intermediates.
focus
this
review
most
recent
experimental
theoretical
work
photoinduced
proteins.
We
also
provide
overview
photophysics
proteins,
highlighting
interplay
between
other
channels
(fluorescence,
radiationless
relaxation,
intersystem
crossing).
similarities
differences
with
photochemical
biological
systems
dyes
discussed.