Poultry Science,
Год журнала:
2022,
Номер
101(9), С. 102037 - 102037
Опубликована: Июль 1, 2022
The
diversity
of
bacteria
and
fungi
in
the
gut
microbiota
commercial
broilers
that
raised
cages
from
hatch
to
end
production
cycle
were
examined
by
an
analysis
3,592
3,899
amplicon
sequence
variants
(ASVs),
respectively.
More
than
90%
sequences
bacterial
communities
related
Firmicutes
Proteobacteria.
fungal
Ascomycota,
Basidiomycota,
Glomeromycota.
A
statistical
composition
succession
showed
age
was
one
main
factors
affecting
intestinal
microbial
broilers.
increasingly
complex
community
transient
occurred
along
with
increase
age.
This
dynamic
change
observed
be
similar
between
fungi.
had
a
special
structure
first
3
d
after
birth
broiler.
quite
stable
period
rapid
skeletal
growth
(d
14–21),
then
changed
significantly
gaining
weight
35–42),
thus
indicating
unique
structures
at
different
developmental
stages.
We
several
occupied
key
functions
broilers,
suggesting
homeostasis
might
affected
losses
via
altering
interactions
microbiota.
study
aimed
provide
data
basis
for
manipulating
stages,
order
improve
health
Microbiology Spectrum,
Год журнала:
2023,
Номер
11(4)
Опубликована: Июнь 20, 2023
The
pivotal
roles
of
gut
microbiota
in
severe
acute
pancreatitis-associated
lung
injury
(SAP-ALI)
are
increasingly
revealed,
and
recent
discoveries
the
gut-lung
axis
have
provided
potential
approaches
for
treating
SAP-ALI.
Qingyi
decoction
(QYD),
a
traditional
Chinese
medicine
(TCM),
is
commonly
used
clinical
to
treat
However,
underlying
mechanisms
remain
be
fully
elucidated.
Herein,
by
using
caerulein
plus
lipopolysaccharide
(LPS)-induced
SAP-ALI
mice
model
antibiotics
(Abx)
cocktail-induced
pseudogermfree
model,
we
tried
uncover
administration
QYD
explored
its
possible
mechanisms.
Immunohistochemical
results
showed
that
severity
intestinal
barrier
functions
could
affected
relative
depletion
bacteria.
composition
was
partially
recovered
after
treatment
with
decreased
Firmicutes/Bacteroidetes
ratio
increased
abundance
short-chain
fatty
acids
(SCFAs)-producing
Correspondingly
levels
SCFAs
(especially
propionate
butyrate)
feces,
gut,
serum,
lungs
were
observed,
generally
consistent
changes
microbes.
Western-blot
analysis
RT-qPCR
indicated
AMPK/NF-κB/NLRP3
signaling
pathway
activated
oral
QYD,
which
found
possibly
related
regulatory
effects
on
intestine
lungs.
In
conclusion,
our
study
provides
new
insights
into
through
modulating
has
prospective
practical
value
use
future.
IMPORTANCE
Gut
affects
function.
During
SAP,
significant
increase
pathogens
(Escherichia,
Enterococcus,
Enterobacter,
Peptostreptococcus,
Helicobacter)
observed.
At
same
time,
pathogenic
bacteria
SCFAs-producing
(Bacteroides,
Roseburia,
Parabacteroides,
Prevotella,
Akkermansia).
addition,
mediated
along
may
play
an
essential
role
preventing
pathogenesis
SAP-ALI,
allows
reduced
systemic
inflammation
restoration
barrier.
Frontiers in Microbiology,
Год журнала:
2023,
Номер
14
Опубликована: Ноя. 8, 2023
Purpose
of
review
This
comprehensively
discusses
the
role
gut
microbiome
and
its
metabolites
in
health
disease
sheds
light
on
importance
a
holistic
approach
assessing
gut.
Recent
findings
The
consisting
bacteriome,
mycobiome,
archaeome,
virome
has
profound
effect
human
health.
Gut
dysbiosis
which
is
characterized
by
perturbations
microbial
population
not
only
results
gastrointestinal
(GI)
symptoms
or
conditions
but
can
also
give
rise
to
extra-GI
manifestations.
microorganisms
produce
(short-chain
fatty
acids,
trimethylamine,
hydrogen
sulfide,
methane,
so
on)
that
are
important
for
several
interkingdom
interactions
functions.
They
participate
various
host
metabolic
processes.
An
alteration
species
affect
their
respective
metabolite
concentrations
have
serious
implications.
Effective
assessment
crucial
as
it
provide
insights
into
one’s
overall
Summary
Emerging
evidence
highlights
disease.
As
implicated
GI
well
symptoms,
plays
well-being
host.
may
status
leading
more
care.
Abstract
Gut
microbiota
is
an
intricate
microbial
community
containing
bacteria,
fungi,
viruses,
archaea,
and
protozoa,
each
of
them
contributes
to
diverse
aspects
host
health.
Nevertheless,
the
influence
interaction
among
gut
on
health
remains
uncovered.
Here,
we
showed
that
between
intestinal
fungi
bacteria
shaped
lung
inflammation
during
infection.
Specifically,
antifungal
drug‐induced
dysbiosis
mycobiota
enhanced
Dysbiosis
led
Escherichia
coli
(
E.
)
overgrowth
translocation
infection,
which
induced
accumulation
CD45
+
F4/80
Ly6G
−
Ly6C
CD11b
CD11c
macrophages.
Clearance
macrophages
or
deletion
TLR4
(Toll‐like
receptor
4,
recognition
LPS)
rather
than
Dectin‐1
(recognition
beta‐1,3/1,6
glucans
fungi)
blocked
aggravation
These
findings
suggest
commensal
affects
through
gut–lung
axis,
offering
a
potential
therapeutic
target
for
ameliorating
International Journal of Biological Sciences,
Год журнала:
2022,
Номер
18(10), С. 3981 - 3992
Опубликована: Янв. 1, 2022
Intestinal
ischemia/reperfusion
(I/R)
is
a
common
pathophysiological
process
in
clinical
severe
patients,
and
the
effect
of
intestinal
I/R
injury
on
patient's
systemic
state
far
greater
than
that
primary
injury.In
recent
years,
more
evidence
has
shown
microbiota
its
metabolites
play
an
important
role
occurrence,
development,
diagnosis
treatment
injury.Intestinal
regulated
by
host
genes,
immune
response,
diet,
drugs
other
factors.The
metabolism
potential
determine
significance
health
diseases.Therefore,
targeting
may
be
effective
therapy
for
I/R-induced
extraintestinal
organ
injury.This
review
focuses
injury,
summarizes
latest
progress
regulating
to
treat
injury.
Frontiers in Nutrition,
Год журнала:
2022,
Номер
9
Опубликована: Фев. 28, 2022
Chemotherapy
generally
causes
serious
diarrhea
and
oral
mucositis
in
cancer
patients,
subsequently
affects
treatment.
Oral
administration
of
probiotics
provides
a
therapeutic
choice
to
address
these
limitations.
This
study
aims
conduct
systematic
review
meta-analysis
on
the
efficacy
probiotic
use
management
chemotherapy-induced
adverse
reactions,
summarize
mechanisms
underlying
action.
We
searched
PubMed,
Embase,
ClinicalTrials.gov,
Web
Science
from
start
its
completion
Dec.
31,
2021.
Risk
bias
was
assessed
using
Cochrane
Collaboration's
Tool.
Statistical
analysis
acquired
data
performed
via
RevMan
Stata
Software.
The
protocol
registered
International
Prospective
Register
Systematic
Reviews
(PROSPERO
registration
number:
CRD42020220650).
Twelve
randomized
controlled
trials
including
1,013
patients
were
recruited
analyzed
standard
procedure
meta-analysis.
In
contrast
control
group,
orally
taking
significantly
decreased
risk
(≥
1
grade)
(RR
=
0.70;
95%
Cl:
0.56,
0.88;
P
0.002)
(RR:
0.84;
0.78,
0.91;
<
0.00001)
at
all
grades.
Further
found
that
severe
2
grades)
0.50;
0.32,
0.78;
also
declined
3
0.66;
0.55,
0.79;
after
use.
Interestingly,
beneficial
effects
displayed
statistically
significant
only
Asian
patients.
Importantly,
more
species
bacteria
they
took,
lower
incidences
reactions
occurred.
used
Egger's
test
value
confirm
there
is
no
publication
bias.
demonstrated
administrated
has
potential
decrease
incidences.
However,
against
needs
be
further
verified
through
clinical
trials,
number
have
optimized
standardized
prior
applications.
https://www.crd.york.ac.uk,
identifier:
220650.
Frontiers in Microbiology,
Год журнала:
2022,
Номер
13
Опубликована: Март 8, 2022
Hepatocellular
carcinoma
(HCC),
a
primary
liver
cancer,
is
closely
associated
with
the
gut
microbiota.
However,
role
of
fungi
in
development
HCC
remains
unclear.
The
aim
this
study
was
to
explore
influence
intestinal
Candida
albicans
on
HCC.
Here,
We
found
that
patients
showed
significantly
decreased
diversity
mycobiome
and
increased
abundance
C.
albicans,
compared
cirrhosis.
gavage
WT
models
tumor
size
weight
influenced
plasma
metabolome,
which
indicated
by
alterations
117
metabolites,
such
as
L-carnitine
L-acetylcarnitine,
several
KEGG
enriched
pathways,
phenylalanine
metabolism
citrate
cycle.
Moreover,
expression
nucleotide
oligomerization
domain-like
receptor
family
pyrin
domain
containing
6
(NLRP6)
tissues
epithelial
cells
mice
interacted
increased.
Notably,
colonization
had
no
effect
growth
Nlrp6-/-
mice.
In
conclusion,
abnormal
reprogrammed
contributed
progression
dependent
NLRP6,
provided
new
targets
for
treatment
Microbial Ecology,
Год журнала:
2022,
Номер
85(4), С. 1498 - 1513
Опубликована: Май 2, 2022
Abstract
Honey
bees
are
a
model
for
host–microbial
interactions
with
experimental
designs
evolving
towards
conventionalized
worker
bees.
Research
on
gut
microbiome
transmission
and
assembly
has
examined
only
fraction
of
factors
associated
the
colony
hive
environment.
Here,
we
studied
effects
diet
social
isolation
tissue-specific
bacterial
fungal
colonization
midgut
two
key
hindgut
regions.
We
found
that
both
treatment
significantly
influenced
early
explaining
similar
proportions
variation.
In
agreement
previous
work,
interaction
older
workers
was
unnecessary
core
transmission.
Exposure
to
natural
eclosion
fresh
stored
pollen
resulted
in
communities
were
taxonomically
structurally
equivalent
those
produced
setting.
Stressed
diets
no
or
autoclaved
decreased
abundance
diversity,
atypical
structure
variation
functionally
important
bacteria.
Without
exposure
active
environment,
strain
diversity
keystone
ileum
species
Gilliamella
apicola
markedly
reduced.
These
changes
larger
microbiotas
suggesting
extended
environment
plays
an
antibiotic
role
establishment.
conclude
is
facultative
horizontal
5
6
readily
acquired
from
built
diet.
Our
findings
contribute
novel
insights
into
influencing
maintenance
honey
bee
microbiota
facilitate
future
designs.
Abstract
Specific
roles
of
gut
microbes
in
COVID‐19
progression
are
critical.
However,
the
circumstantial
mechanism
remains
elusive.
In
this
study,
shotgun
metagenomic
or
metatranscriptomic
sequencing
was
performed
on
fecal
samples
collected
from
13
patients
and
controls.
We
analyzed
structure
microbiota,
identified
characteristic
bacteria,
selected
biomarkers.
Further,
gene
ontology
(GO)
Kyoto
Encyclopedia
Genes
Genomes
(KEGG)
annotations
were
employed
to
correlate
taxon
alterations
corresponding
functions.
The
microbiota
characterized
by
enrichment
opportunistic
pathogens
depletion
commensals.
abundance
Bacteroides
spp.
displayed
an
inverse
relationship
with
severity,
whereas
Actinomyces
oris
,
Escherichia
coli
Streptococcus
parasanguini
positively
correlated
disease
severity.
genes
encoding
oxidoreductase
significantly
enriched
microbiome
group.
KEGG
annotation
indicated
that
expression
ABC
transporter
upregulated,
while
synthesis
pathway
butyrate
aberrantly
reduced.
Furthermore,
increased
metabolism
lipopolysaccharide,
polyketide
sugar,
sphingolipids,
neutral
amino
acids
found.
These
results
suggested
a
state
oxidative
stress.
Healthy
may
enhance
antiviral
defenses
via
metabolism,
accumulation
inflammatory
bacteria
exacerbate
progression.
Abstract
Background
Extensive
work
has
been
accomplished
to
characterize
the
intestinal
bacterial
community,
known
as
microbiota,
and
its
association
with
host
health
disease.
However,
very
little
is
about
spatiotemporal
development
origin
of
a
minor
fungal
mycobiota,
in
humans
animals,
particularly
avian
species.
Results
In
this
study,
we
comprehensively
characterized
biogeography
succession
gastrointestinal
(GI)
mycobiota
broiler
chickens
further
revealed
sources
that
are
responsible
for
initial
long-term
establishment
GI
tract.
Using
Illumina
sequencing
internal
transcribed
spacer
2
(ITS2)
region
rRNA
genes,
detected
significant
spatial
temporal
differences
along
contrary
was
more
diverse
upper
than
lower
tract
no
apparent
trend
up
42
days
age.
The
dominated
by
phyla
Ascomycota
Basidiomycota
Gibberella
,
Aspergillus
Candida
being
most
abundant
genera.
Although
chicken
highly
dynamic,
Fusarium
pseudonygamai
dominant
throughout
regardless
age
study.
core
mycobiome
consisted
26
taxa
accounting
greater
85%
population
each
location.
observed
high
variations
among
different
studies.
We
also
showed
total
varied
greatly
from
1.0
×
10
4
1.1
6
/g
digesta
only
accounted
less
0.06%
bacteria
day-42
broilers.
Finally,
hatchery
environment
colonization
newly
hatched
chickens,
but
quickly
replaced
fungi
diet
within
3
days.
Conclusions
Relative
microbiota
consists
trillions
hundreds
species
becomes
relatively
stabilized
animals
age,
microbial
community
temporally
dynamic
limited
diversity
obvious
pattern
successive
changes.
similar
spatially
tract,
although
it
Dietary
major
source
growing
chickens.
Abstract
Background
Gut
fungi
are
increasingly
recognized
as
important
contributors
to
host
physiology,
although
most
studies
have
focused
on
gut
bacteria.
Post-translational
modifications
(PTMs)
of
proteins
play
vital
roles
in
cell
metabolism.
However,
the
contribution
protein
PTMs
remains
unclear.
Mining
that
mediate
and
dissecting
their
mechanism
urgently
needed.
Results
We
studied
fungal
communities
56
weaned
piglets
finishing
pigs
from
seven
pig
breeds
using
internal
transcribed
spacer
(ITS)
gene
amplicon
sequencing
metagenomics.
The
results
showed
Kazachstania
slooffiae
was
abundant
species
piglets.
K.
decreased
intestinal
epithelial
lysine
succinylation
levels,
these
were
especially
enriched
glycolysis
pathway.
demonstrated
promoted
by
decreasing
activating
sirtuin
5
(SIRT5).
Furthermore,
-derived
5′-methylthioadenosine
metabolite
SIRT5
activity.
Conclusions
These
findings
provide
a
landscape
suggest
plays
crucial
role
metabolism
through
desuccinylation.
Our
data
also
potential
protective
strategy
for
with
an
insufficient
energy
supply.