bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Окт. 14, 2023
Summary
Coronaviruses
exhibit
many
mechanisms
of
genetic
innovation,
including
the
acquisition
accessory
genes
that
originate
by
capture
cellular
or
through
duplication
existing
viral
genes.
Accessory
influence
host
range
and
tropism,
but
little
is
known
about
how
selection
acts
on
these
variable
regions
virus
genomes.
We
used
experimental
evolution
mouse
hepatitis
(MHV)
encoding
a
AKAP7
phosphodiesterase
an
inactive
native
phosphodiesterase,
NS2
to
model
evolutionary
fate
After
courses
serial
infection,
gene
NS2,
ORF2,
unexpectedly
remained
intact,
suggesting
it
under
cryptic
constraint
uncoupled
from
function
NS2.
In
contrast,
was
retained
strong
rapidly
lost
relaxed
selection.
Experimental
also
led
altered
replication
in
cell
type-specific
manner
changed
relative
proportions
subgenomic
RNA
plaque-purified
isolates,
revealing
additional
adaptation.
Guided
retention
ORF2
similar
patterns
related
betacoronaviruses,
we
analyzed
ORF8
SARS-CoV-2,
which
arose
via
contains
premature
stop
codons
several
globally
successful
lineages.
As
with
MHV
coding-defective
SARS-CoV-2
remains
largely
mirroring
observed
during
evolution,
challenging
assumptions
dynamics
loss
genomes
extending
findings
viruses
currently
adapting
humans.
Viruses,
Год журнала:
2024,
Номер
16(1), С. 161 - 161
Опубликована: Янв. 22, 2024
Severe
cases
of
SARS-CoV-2
infection
are
characterized
by
an
immune
response
that
leads
to
the
overproduction
pro-inflammatory
cytokines,
resulting
in
lung
damage,
cardiovascular
symptoms,
hematologic
acute
kidney
injury
and
multiple
organ
failure
can
lead
death.
This
remarkable
increase
cytokines
other
inflammatory
molecules
is
primarily
caused
viral
proteins,
particular
interest
has
been
given
ORF8,
a
unique
accessory
protein
specific
SARS-CoV-2.
Despite
plenty
research,
precise
mechanisms
which
ORF8
induces
proinflammatory
not
clear.
Our
investigations
demonstrated
augments
production
IL-6
induced
Poly(I:C)
human
embryonic
(HEK)-293
monocyte-derived
dendritic
cells
(mono-DCs).
We
discuss
our
findings
multifaceted
roles
as
modulator
cytokine
response,
focusing
on
type
I
interferon
IL-6,
key
component
In
addition,
we
explore
hypothesis
may
act
through
pattern
recognition
receptors
dsRNA
such
TLRs.
Frontiers in Cellular and Infection Microbiology,
Год журнала:
2024,
Номер
14
Опубликована: Май 22, 2024
SARS-CoV-2
is
the
causative
virus
of
devastating
COVID-19
pandemic
that
results
in
an
unparalleled
global
health
and
economic
crisis.
Despite
unprecedented
scientific
efforts
therapeutic
interventions,
fight
against
continues
as
rapid
emergence
different
variants
concern
increasing
challenge
long
COVID-19,
raising
a
vast
demand
to
understand
pathomechanisms
its
long-term
sequelae
develop
strategies
beyond
per
se
.
Notably,
addition
itself,
replication
cycle
clinical
severity
also
governed
by
host
factors.
In
this
review,
we
therefore
comprehensively
overview
pathogenesis
from
perspective
factors
host-virus
interactions.
We
sequentially
outline
pathological
implications
molecular
interactions
between
multi-organ
multi-system
summarize
current
agents
targeting
for
treating
these
diseases.
This
knowledge
would
be
key
identification
new
pathophysiological
aspects
mechanisms,
development
actionable
targets
tackling
sequelae.
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Март 6, 2024
The
open
reading
frame
8
(ORF8),
an
accessory
protein
of
SARS-CoV-2,
is
prone
to
deletions
and
mutations
across
different
viral
variants,
which
was
first
described
in
several
Singapore
variants.
reason
why
evolution
favors
loss
or
inactivation
ORF8
not
fully
understood,
although
the
effects
on
inflammation,
immune
evasion,
disease
severity
have
been
described.
Here
we
show
using
clinical
deficient
isolates,
virus
like
particles
(VLPs)
replicons
that
expression
dampens
particle
production.
physically
interacts
with
Spike
induces
Golgi
fragmentation,
overall
contributing
less
Using
systematic
deletions,
mapped
reducing
function
its
N
terminal
signal
peptide.
Interestingly,
this
part
severely
truncated
recent
XBB.1.5
variant,
when
restored,
suppresses
production
context
entire
genome.
Collectively,
our
data
support
model
evolutionary
pressure
exists
delete
sequence
SARS-CoV-2
variants
enable
Viruses,
Год журнала:
2025,
Номер
17(2), С. 143 - 143
Опубликована: Янв. 22, 2025
Pulmonary
and
extrapulmonary
manifestations
have
been
reported
following
infection
with
SARS-CoV-2,
the
causative
agent
of
COVID-19.
The
virus
persists
in
multiple
organs
due
to
its
tropism
for
various
tissues,
including
skeletal
system.
This
study
investigates
effects
SARS-CoV-2
infection,
both
ancestral
Omicron
viral
strains,
on
differentiating
mesenchymal
stem
cells
(MSCs),
precursor
cells,
into
osteoblasts.
Although
strains
can
productively
infect
osteoblasts,
cell
remained
abortive.
Viral
exposure
during
osteoblast
differentiation
demonstrates
that
variants
inhibit
mineral
organic
matrix
deposition.
is
accompanied
by
reduced
expression
runt-related
transcription
factor
2
(RUNX2)
increased
levels
interleukin-6
(IL-6),
a
cytokine
negatively
regulates
differentiation.
Furthermore,
upregulation
receptor
activator
nuclear
kappa
B
ligand
(RANKL)
strongly
suggests
may
disrupt
bone
homeostasis
promoting
osteoclast
differentiation,
ultimately
leading
formation
bone-resorbing
cells.
process
dependent
spike
glycoprotein
since
neutralization
significantly
effect
infective
UV-C
inactivated
virus.
underscores
capacity
essential
preserving
functionality
tissue.
Cells,
Год журнала:
2025,
Номер
14(9), С. 624 - 624
Опубликована: Апрель 22, 2025
Secreted
viral
proteins
are
crucial
in
virus–host
interactions,
as
they
modify
the
host
microenvironment
to
promote
infection.
These
secreted
could
alter
immune
and
inflammatory
responses,
allowing
viruses
evade
defense
mechanisms
such
cytotoxic
T
cell
activation
antibody
neutralization.
Some
mimic
molecules
suppress
antiviral
making
them
valuable
targets
for
antivirals
diagnostics.
Notable
examples
include
BARF1
from
Epstein–Barr
virus,
associated
with
gastric
cancer;
vIL-10
which
regulates
responses
contributes
autoimmune
diseases;
NS1
dengue
vascular
permeability
early
diagnosis;
NSP4
rotavirus
an
enterotoxin,
among
others.
The
study
of
these
improves
our
understanding
pathogenesis
helps
develop
innovative
treatments
infectious
non-infectious
diseases,
taking
advantage
evolutionary
adaptations
viruses.
This
review
explores
their
impact
on
infection
cycle,
disease
progression,
key
processes,
cycle
regulation,
apoptosis,
signaling.
Research
deepens
basic
knowledge
virology
generates
alternative
methods
detecting
biomarkers
creating
more
effective
therapies,
well
implementing
some
emerging
technologies,
biosensors
plasmon
resonance,
diagnosis
diseases.
Viruses,
Год журнала:
2024,
Номер
16(8), С. 1310 - 1310
Опубликована: Авг. 17, 2024
Coronavirus
disease
2019
(COVID-19)
might
impact
progression
in
people
living
with
HIV
(PLWH),
including
those
on
effective
combination
antiretroviral
therapy
(cART).
These
individuals
often
experience
chronic
conditions
characterized
by
proviral
latency
or
low-level
viral
replication
CD4+
memory
T
cells
and
tissue
macrophages.
Pro-inflammatory
cytokines,
such
as
TNF-α,
IL-1β,
IL-6,
IFN-γ,
can
reactivate
provirus
expression
both
primary
cell
lines.
cytokines
are
elevated
infected
SARS-CoV-2,
the
virus
causing
COVID-19.
However,
it
is
still
unknown
whether
SARS-CoV-2
modulate
reactivation
cells.
Here,
we
report
that
exposure
of
chronically
HIV-1-infected
myeloid
line
U1
to
two
different
isolates
(ancestral
BA.5)
reversed
its
latent
state
after
24
h.
We
also
observed
human
monocyte-derived
macrophages
(MDM)
initially
drove
their
polarization
towards
an
M1
phenotype,
which
shifted
M2
over
time.
This
effect
was
associated
soluble
factors
released
during
initial
phase
reactivated
production
cells,
like
MDM
stimulated
TLR
agonist
resiquimod.
Our
study
suggests
SARS-CoV-2-induced
systemic
inflammation
interaction
could
influence
HIV-1
PLWH.
Biomolecules,
Год журнала:
2023,
Номер
13(10), С. 1452 - 1452
Опубликована: Сен. 26, 2023
In
light
of
the
COVID-19
global
pandemic
caused
by
SARS-CoV-2,
ongoing
research
has
centered
on
minimizing
viral
spread
either
stopping
entry
or
inhibiting
replication.
Repurposing
antiviral
drugs,
typically
nucleoside
analogs,
proven
successful
at
virus
This
review
summarizes
current
information
regarding
coronavirus
classification
and
characterization
presents
broad
clinical
consequences
SARS-CoV-2
activation
angiotensin-converting
enzyme
2
(ACE2)
receptor
expressed
in
different
human
cell
types.
It
provides
publicly
available
knowledge
chemical
nature
proposed
therapeutics
their
target
biomolecules
to
assist
identification
potentially
new
drugs
for
treatment
infection.
Severe
cases
of
SARS-CoV-2
infection
are
characterized
by
an
immune
response
that
leads
to
the
overproduction
pro-inflammatory
cytokines,
resulting
in
damage
lungs
and
other
organs.
This
remarkable
increase
cytokines
inflammatory
molecules
is
primary
caused
viral
proteins,
particular
ORF8,
a
unique
accessory
protein
specific
SARS-CoV-2.
In
addition
its
role
cytokine
induction,
ORF8
attributed
with
various
functions,
including
ability
evade
type
I
interferon
responses.
Despite
evidence,
mechanisms
through
which
exerts
these
functions
remains
subject
controversy.
this
mini
review,
we
discuss
multifaceted
roles
as
modulator
response,
focusing
on
IL-6.
We
also
data
from
our
studies
indicating
augments
production
IL-6
induced
Poly(I:C)
human
embryonic
kidney
(HEK)-293
monocyte-derived
dendritic
cells
(mono-DCs).
Microbiology Spectrum,
Год журнала:
2024,
Номер
12(6)
Опубликована: Апрель 30, 2024
Recent
case
reports
and
epidemiological
data
suggest
that
fungal
infections
represent
an
underappreciated
complication
among
people
with
severe
COVID-19.
However,
the
frequency
of
colonization
in
patients
COVID-19
associations
specific
immune
responses
airways
remain
incompletely
defined.
We
previously
generated
a
single-cell
RNA-sequencing
set
characterizing
upper
respiratory
microenvironment
during
mapped
relationship
between
disease
severity
local
behavior
nasal
epithelial
cells
infiltrating
cells.
Our
previous
study,
agreement
findings
from
related
human
cohorts,
demonstrated
profound
deficiency
host
immunity,
particularly
type
I
III
interferon
signaling
tract,
is
associated
rapid
progression
to
worse
clinical
outcomes.
have
now
performed
further
analysis
this
cohort
identified
subset
participants
concurrent
detection
Candida
species-derived
transcripts
within
samples
collected
nasopharynx
trachea.
Here,
we
present
characteristics
these
individuals.
Using
matched
transcriptomic
profiles
individuals'
mucosa,
identify
signatures
suggestive
IL17
stimulation
anti-fungal
immunity.
Further,
observe
significant
expression
inflammatory
cascades
tracheal
epithelium
all
who
went
on
develop
COVID-19,
even
without
detectable
genetic
material
pathogens.
Together,
our
stimulation-in
part
driven
by
colonization-and
blunted
common
feature
infection.
In
paper,
suggesting
symptomatic
asymptomatic
coinfections
can
impact
patient
hospitalization.
By
looking
into
presence
other
pathogens
their
effect
response
hospitalizations,
aim
offer
insight
underestimated
scenario,
furthering
current
knowledge
determinants
could
be
considered
for
future
diagnostic
intervention
strategies.