Target prediction of potential candidate miRNAs from Oryza sativa to silence the Pyricularia oryzae genome in rice blast DOI Creative Commons

Tauheed Suddal,

Mudassar Fareed Awan, Sajed Ali

и другие.

Scientific Reports, Год журнала: 2024, Номер 14(1)

Опубликована: Сен. 18, 2024

Rice (Oryza sativa) is a staple food for billions of people across the globe, that feeds nearly three-quarters human population on Earth, particularly in Asian countries. yield has been drastically reduced and severely affected by various biotic abiotic stresses, especially pathogens. Controlling attack such pathogens matter immediate concern as losses rice crops could deprive millions lives nourishment worldwide. Pyricularia oryzae one pathogen considered major disease because its worldwide geographic distribution. P. belongs to kingdom fungi, causes blast ultimately adversely affecting crop. Keeping view this alarming scenario, present study was designed so identifications genome-encoded miRNAs Oryza sativa were employed target silence genome oryzae. This accomplished computational analysis algorithms related miRNA prediction. Four prediction i.e., psRNATarget, RNA22, miRanda, RNAhybrid utilized investigation. The consensus among created discover six from O. with conservation site fully evaluated discovery these novel paved strong way toward control rice. It will open doors further research field gene silencing These can be future experimentation create constructs regarding crops. In future, would surely helpful development resistant varieties.

Язык: Английский

Antioxidant production promotes defense mechanism and different gene expression level in Zea mays under abiotic stress DOI Creative Commons
Qurban Ali,

Adnan Sami,

Muhammad Zeshan Haider

и другие.

Scientific Reports, Год журнала: 2024, Номер 14(1)

Опубликована: Март 26, 2024

Abstract The growth and productivity of maize are severely affected by soil salinity. crucial determinants for the future performance plants productive seed germination seedling establishment; however, both stages liable to For grain, is an economically significant crop sensitive abiotic stresses. However, little known about defense responses salinity-induced antioxidant oxidative stress in maize. In our work, commercially available variety Raka-Poshi was grown pots 30 days under greenhouse conditions. To evaluate salt-induced oxidative/antioxidant salt 0, 25, 50, 75, 100 150 mM concentrations, treatments were provided using sodium chloride (NaCl). All biochemical indices calculated all NaCl while drought induced up 50% irrigation water. After germination, leaves collected measurement lipid peroxidase or malondialdehyde (MDA), glutathione reductase (GR), guaiacol (GPOD), hydrogen peroxide (H 2 O ), superoxide dismutase (SOD), lipoxygenase (LOX), catalase (CAT), ascorbate (APOD) glutathione- S -transferase (GST). results revealed a 47% reduction have shown that successive increase concentrations caused production. With concentration stress, lower levels H , SOD, MDA detected leaves. regarding morphology seedlings indicated root length shoot applications root-to-shoot weights found be increased decreased conditions During gene expression analysis collectively indicate that, conditions, nine mentioned enzyme-related genes consistently downregulated.

Язык: Английский

Процитировано

14

DNA damage in inhabitants exposed to heavy metals near Hudiara drain, Lahore, Pakistan DOI Creative Commons
Saima Jadoon, Qurban Ali,

Adnan Sami

и другие.

Scientific Reports, Год журнала: 2024, Номер 14(1)

Опубликована: Апрель 10, 2024

The current study was conducted on the inhabitants living in area adjacent to Hudiara drain using bore water and vegetables drain. Toxic heavy metals badly affect human health because of industrial environmental contamination. Particularly hundreds millions individuals globally have faced consequences consuming food tainted with pollutants. Concentrations blood were elevated drainings Lahore city, Pakistan, due highly polluted effluents. determined effects high levels (Cd, Cu, Zn, Fe, Pb, Ni, Hg, Cr) residents draining area, including serum MDA, 8-Isoprostane, 8-hydroxyguanosine, creatinine levels. An absorption spectrophotometer used determine wate water, drinking soil, plants beings sampleas ELISA kits assess level 8-Isoprostane plasma level. Waste samples, irrigation Soil Plants samples specimens adult different weights ages collected from (Laloo Mohanwal), control obtained unpolluted site Sheiikhpura, 60 km away site. damage cell membrane DNA structures, increasing creatinine, 8-Isoprostane. contaminated vegetables, resulting increased Isoprostane, 8-hydroxy-2-guanosine compared group. In addition,. This also investigated metal concentrations meat milk buffaloes, cows, goats. meat, cow showed highest Cd, Fe Mn concentrations. also, cows exhibited Cu results highlight species-specific variations accumulation, emphasizing need for targeted monitoring address potential risks. significant difference between two groups i.e., group affected group, all traits respondents (weight, age, values 8-hydroxyguaniosine, level). Pearson's correlation coefficient calculated. has shown that or not significantly correlated so it is independent age. proved selected villages Laloo Mohanwal, excess body damages increases 8-hydroxyguaniosine. As a result, National international cooperation must take major steps exposure metals.

Язык: Английский

Процитировано

5

Genome wide identification of phenylalanine ammonia-lyase (PAL) gene family in Cucumis sativus (cucumber) against abiotic stress DOI Creative Commons

Muskan Amjad,

Yuexia Wang, Shiming Han

и другие.

BMC Genomic Data, Год журнала: 2024, Номер 25(1)

Опубликована: Авг. 26, 2024

Phenylalanine ammonia lyase (PAL) is a widely studied enzyme in plant biology due to its role connecting primary metabolism secondary phenylpropanoid metabolism, significantly influencing growth, development, and stress response. Although PAL genes have been extensively various species but their exploration cucumber has limited. This study successfully identified 11 CsPAL Cucumis sativus (cucumber). These were categorized based on conserved sequences revealing patterns through MEME analysis multiple sequence alignment. Interestingly, cis-elements related found the promoter regions of genes, indicating involvement responding abiotic stress. Furthermore, these gene's promoters contained components associated with light, development hormone responsiveness. suggests that they may roles developmental processes. MicroRNAs as key regulators for playing crucial modulating expression. discovery underscores complex regulatory network involved plant's response conditions. The influence microRNAs further highlights complicated mechanisms plants use manage Gene expression analyzed using RNA-seq data. significant upregulation CsPAL9 during HT3h (heat 3 h) heightened both CsPAL7 under HT6h 6 transcriptome suggest potential cucumber's tolerance heat comprehensive investigation aims enhance our understanding gene family's versatility, offering valuable insights advancements genetics.

Язык: Английский

Процитировано

5

Evaluation of the Molecular and Phenotypic Performance of Transgenic Rice Genotypes by Using RAPD Technology DOI Open Access

D. M. Majeed,

Mohammed Hussein Noor Al-jana,

Eman Noaman Ismail

и другие.

IOP Conference Series Earth and Environmental Science, Год журнала: 2025, Номер 1449(1), С. 012071 - 012071

Опубликована: Фев. 1, 2025

Abstract Knowledge of genetic basis stress tolerance could be helpful for a successful breeding program. So, the study was conducted to estimate molecular and phenotypic performance several genotype transgenic rice. The seeds ten genotypes two local varieties as control were cultivated selection best with high economic yields under saline conditions. A Split-Plot Design three replications used conduct experiment number three. Yield yield related traits well parameters recorded. G21 significant in terms fertile panicles (11.48 panicle. plant −1 ), seed weight (20.85 g), harvest index (45.21%) G12 grain per (21.44 biological (51.46 g). Regarding salinity levels, 6 dS level excels all characteristics. As interaction between both factors (genotypes × levels), excelled levels (3, 9 dS/m) accounting 25.38, 21.14, 17.81 g , respectively. results also revealed existence affinity studied conditions, where highest value reached 0.9048 G18 lowest Jasmine varieties. Overall, showed field salt conditions characters future selection.

Язык: Английский

Процитировано

0

Assessment of bioremediation potential of Calotropis procera and Nerium oleander for sustainable management of vehicular released metals in roadside soils DOI Creative Commons
Sumreen Anjum,

Mubeen Sarwar,

Qurban Ali

и другие.

Scientific Reports, Год журнала: 2024, Номер 14(1)

Опубликована: Апрель 18, 2024

Land transportation is a major source of heavy metal contamination along the roadside, posing significant risks to human health through inhalation, oral ingestion, and dermal contact. Therefore, this study has been designed determine concentrations vehicular released metals (Cd, Pb, Ni, Cu) in roadside soil leaves two commonly growing native plant species (Calotropis procera Nerium oleander).Two busy roads i.e., Lahore-Okara road (N-5) Okara-Faisalabad (OFR) Punjab, Pakistan, were selected for study. The data collected from five sites each during four seasons. Control samples ~ 50 m away road. content i.e. lead (Pb), cadmium (Cd) nickel (Ni) copper (Cu) determined by using Atomic Absorption Spectrophotometer (AAS). Significantly high amount all studied observed both contrast control ones. mean concentration ranged as Cd (2.20-6.83 mg/kg), Pb (4.53-15.29 Ni (29.78-101.26 Cu (61.68-138.46 mg/kg) (0.093-0.53 (4.31-16.34 (4.13-16.34 (2.98-32.74 mg/kg). Among roads, higher was noted N-5 Significant temporal variations also roads. order different seasons summer > autumn spring winter. Furthermore, accumulation potential Calotropis than that oleander. sustainable management contamination, plantation recommended roadsides.

Язык: Английский

Процитировано

3

Target prediction of potential candidate miRNAs from Oryza sativa to silence the Pyricularia oryzae genome in rice blast DOI Creative Commons

Tauheed Suddal,

Mudassar Fareed Awan, Sajed Ali

и другие.

Scientific Reports, Год журнала: 2024, Номер 14(1)

Опубликована: Сен. 18, 2024

Rice (Oryza sativa) is a staple food for billions of people across the globe, that feeds nearly three-quarters human population on Earth, particularly in Asian countries. yield has been drastically reduced and severely affected by various biotic abiotic stresses, especially pathogens. Controlling attack such pathogens matter immediate concern as losses rice crops could deprive millions lives nourishment worldwide. Pyricularia oryzae one pathogen considered major disease because its worldwide geographic distribution. P. belongs to kingdom fungi, causes blast ultimately adversely affecting crop. Keeping view this alarming scenario, present study was designed so identifications genome-encoded miRNAs Oryza sativa were employed target silence genome oryzae. This accomplished computational analysis algorithms related miRNA prediction. Four prediction i.e., psRNATarget, RNA22, miRanda, RNAhybrid utilized investigation. The consensus among created discover six from O. with conservation site fully evaluated discovery these novel paved strong way toward control rice. It will open doors further research field gene silencing These can be future experimentation create constructs regarding crops. In future, would surely helpful development resistant varieties.

Язык: Английский

Процитировано

2