Arg128*‐Mediated Dual‐Substrate Recognition and Dynamic Transport Mechanisms in (R)‐ω‐Transaminase: Computational Insights and Mutational Profiling Guided Rational Engineering
Jie Chen,
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Shuai Qiu,
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Cong-Lin Ju
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et al.
Biotechnology Journal,
Journal Year:
2025,
Volume and Issue:
20(5)
Published: May 1, 2025
ABSTRACT
ω‐Transaminases
(ω‐TAs)
are
critical
biocatalysts
for
the
asymmetric
synthesis
of
chiral
amines,
and
uniquely
accommodate
both
hydrophobic
hydrophilic
substrates
through
a
conserved
binding
pocket.
In
this
study,
we
combine
computational
simulations
site‐directed
mutagenesis
to
dissect
dual‐function
structure
(
R
)‐selective
ω‐transaminase
from
Aspergillus
terreus
At
ATA).
Our
results
reveal
that
ATA
employs
synergistic
mechanism:
aromatic
residues
within
large
pocket
stabilize
via
π‐driven
interactions,
while
Arg128*
dynamically
interacts
with
compounds
hydrogen
bonding.
Furthermore,
exhibits
remarkable
plasticity
diverse
substrates,
side
chain
adjusting
its
conformation
facilitate
transport
substrates.
Mutational
profiling,
particularly
R128*A
mutation,
directly
validates
these
mechanistic
insights.
finding
reveals
Arg128*‐mediated
dual‐substrate
recognition
mechanisms,
providing
solid
theoretical
foundation
enhancing
industrial
application
transaminases
in
pharmaceutical
green
chemistry.
Language: Английский
Cooked Bean (Phaseolus vulgaris L.) Consumption Alters Bile Acid Metabolism in a Mouse Model of Diet-Induced Metabolic Dysfunction: Proof-of-Concept Investigation
Tymofiy Lutsiv,
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Vanessa K. Fitzgerald,
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Elizabeth S. Neil
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et al.
Nutrients,
Journal Year:
2025,
Volume and Issue:
17(11), P. 1827 - 1827
Published: May 28, 2025
Background/Objectives:
Metabolic
dysregulation
underlies
a
myriad
of
chronic
diseases,
including
metabolic
dysfunction-associated
steatotic
liver
disease
(MASLD)
and
obesity,
bile
acids
emerge
as
an
important
mediator
in
their
etiology.
Weight
control
by
improving
diet
quality
is
the
standard
care
prevention
these
diseases.
Inclusion
pulses,
such
common
bean,
affordable
yet
neglected
approach
to
outcomes.
Thus,
this
study
evaluated
possibility
that
bean
alters
acid
metabolism
health-beneficial
manner.
Methods:
Using
biospecimens
from
several
similarly
designed
studies,
cecal
content,
feces,
tissue,
plasma
samples
C57BL/6
mice
fed
obesogenic
lacking
(control)
or
containing
cooked
were
subjected
total
analysis
untargeted
metabolomics.
RNA-seq,
qPCR,
Western
blot
assays
tissue
complemented
analyses.
Microbial
composition
predicted
function
contents
using
16S
rRNA
gene
amplicon
shotgun
metagenomic
sequencing.
Results:
Bean-fed
had
increased
content
excreted
more
per
gram
feces.
Consistent
with
effects,
synthesis
was
observed.
capacity
metabolize
markedly
altered
greater
prominence
secondary
metabolites
bean-fed
mice,
i.e.,
microbial
chenodeoxycholate/lithocholate
while
hyocholate
reduced.
Conclusions:
In
rendering
resistant
diet-induced
MASLD
consumption
sequesters
acids,
increasing
hepatic
enhancing
diversity
through
metabolism.
Bean-induced
changes
have
potential
improve
dyslipidemia.
Language: Английский