bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: March 8, 2023
Microbes
affect
the
global
carbon
cycle
that
influences
climate
change
and
are
in
turn
influenced
by
environmental
change.
Here,
we
use
data
from
a
long-term
whole-ecosystem
warming
experiment
at
boreal
peatland
to
answer
how
temperature
CO
2
jointly
influence
communities
of
abundant,
diverse,
yet
poorly
understood,
non-fungi
microbial
Eukaryotes
(protists).
These
microbes
ecosystem
function
directly
through
photosynthesis
respiration,
indirectly,
predation
on
decomposers
(bacteria,
fungi).
Using
combination
high-throughput
fluid
imaging
18S
amplicon
sequencing,
report
large
climate-induced,
community-wide
shifts
community
functional
composition
these
(size,
shape,
metabolism)
could
alter
overall
peatlands.
Importantly,
demonstrate
taxonomic
convergence
but
divergence
response
elevated
with
most
responses
being
contingent
organismal
size:
effects
reversed
amplified
larger
not
smaller
ones.
findings
show
interactive
rising
structure
food
webs
—
fragile
stores
25%
terrestrial
is
increasingly
threatened
human
exploitation.
Remote Sensing of Environment,
Journal Year:
2023,
Volume and Issue:
301, P. 113931 - 113931
Published: Dec. 14, 2023
National
aboveground
forest
biomass
products
enable
monitoring
of
dynamics
in
a
consistent
and
repeatable
manner
to
inform
carbon
accounting
sustainable
management
activities.
The
availability
images
the
Earth's
surface
from
combination
Landsat
Sentinel-2A
-2B
provides
an
opportunity
capability
track
intra-year
availing
upon
twice
weekly
acquisition
opportunity.
We
developed
algorithm
that
leverages
these
spatially
spectrally
compatible
data
sources,
called
Tracking
Intra-
Inter-year
Change
(TIIC),
monitor
change
across
Canada's
forested
ecozones
(>650Mha)
near-real
time.
Combining
stand-replacing
information
TIIC
with
explicit
maps
(AGB),
we
demonstrate
how
intra-annual
inter-annual
AGB
dynamics,
including
losses
due
disturbances
gains
vegetation
growth,
can
be
quantified
temporally
spatially.
Using
independent
validation
data,
our
results
for
focus
year
2019
indicate
TIIC,
by
analysing
May
30
September
1,
accurately
detect
overall
accuracy
99%
correctly
attribute
type
(i.e.,
wildfire
or
mechanical
removal,
latter
which
includes
timber
harvesting)
99%.
From
initial
producer's
23%
changed
class,
increases
incrementally
as
additional
are
added
throughout
growing
season.
attaining
98%
end
analysis
period.
Intra-year
complements
on
long-term
trends
derived
annual
time
series
over
several
decades.
Our
indicated
every
ecozone,
widespread
small
positive
increments
yielded
were
greater
than
sum
large,
punctual
resulting
disturbances.
Overall
2019,
increased
2.54%.
Temporally,
80%
stemming
removal
occurred
winter
such
concentrated
at
beginning
In
contrast,
linked
fires
happen
more
stochastically
season
occupy
area.
By
way
disturbance
type,
36%
loss
was
attributed
64%
wildfire.
Following
approach
demonstrated
herein,
changes
tracked
temporal
frequency
informative
practices
ecological
processes
landscape,
thereby
refining
understanding
dynamics.
Ecology and Evolution,
Journal Year:
2023,
Volume and Issue:
13(1)
Published: Jan. 1, 2023
Biomass
dynamics
capture
information
on
population
and
ecosystem-level
processes
(e.g.,
changes
in
production
over
time).
Understanding
how
rising
temperatures
associated
with
global
climate
change
influence
biomass
is
thus
a
pressing
issue
ecology.
The
total
of
species
depends
its
density
average
mass.
Consequently,
disentangling
responds
to
increasingly
warm
variable
ultimately
understanding
temperature
influences
both
mass
dynamics.
Here,
we
address
this
by
keeping
track
experimental
microbial
populations
growing
carrying
capacity
for
15
days
at
two
different
temperatures,
the
presence
absence
variability.
We
develop
simple
mathematical
expression
partition
contribution
assess
responses
either
one
shifts.
Moreover,
use
time-series
analysis
(Convergent
Cross
Mapping)
variability
reciprocal
effects
vice
versa.
show
that
through
dynamics,
which
have
opposite
can
offset
each
other.
also
biomass,
but
effect
independent
any
or
Last,
shift
significantly
across
regimes,
suggesting
rapid
environment-dependent
eco-phenotypic
underlie
responses.
Overall,
our
results
connect
phenotypic
explain
shedding
light
play
cosmopolitan
abundant
microbes
as
world
experiences
temperatures.
Ecology and Evolution,
Journal Year:
2024,
Volume and Issue:
14(4)
Published: April 1, 2024
Abstract
Graphs
in
research
articles
can
increase
the
comprehension
of
statistical
data
but
may
mislead
readers
if
poorly
designed.
We
propose
a
new
plot
type,
sea
stack
plot,
which
combines
vertical
histograms
and
summary
statistics
to
represent
large
univariate
datasets
accurately,
usefully,
efficiently.
compare
five
commonly
used
types
(dot
whisker
plots,
boxplots,
density
scatter
dot
plots)
assess
their
relative
strengths
weaknesses
when
representing
distributions
observed
biological
studies.
find
assessed
are
either
difficult
read
at
sample
sizes
or
have
potential
misrepresent
certain
data,
showing
need
for
an
improved
method
visualisation.
present
analysis
four
ecology
conservation
journals
covering
multiple
areas
these
fields,
finding
widespread
use
uninformative
bar
charts
plots
(60%
all
panels
from
groups
purpose
comparison).
Some
presented
more
informative
figures
by
combining
(16%
panels),
generally
boxplots
second
layer
such
as
flat
better
display
data.
This
shows
appetite
effective
within
ecology,
further
accurate
user‐friendly
were
made
available.
Finally,
we
describe
explain
how
they
overcome
associated
with
other
alternatives
and/or
unevenly
distributed
provide
tool
create
our
R
package
‘seastackplot’,
available
through
GitHub.
Functional Ecology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 18, 2025
Abstract
Individual
variation
in
development
can
strongly
impact
population
density
via
its
on
demography.
When
this
is
caused
by
developmental
plasticity,
the
resulting
effects
are
characterised
as
‘eco‐phenotypic
dynamics’
If
plasticity
turn
sensitive
to
density,
feedbacks’
arise.
individual
density‐dependent
due
resource
limitation,
we
expect
eco‐phenotypic
feedbacks
between
rate
and
be
widespread.
Yet,
exactly
how
rates,
termed
‘heterokairy’
interacts
with
influence
dynamics
unclear.
Here,
provide
conceptual
empirical
starting
points
assess
role
of
heterokairy
dynamics.
We
present
a
framework
identify
impacts,
impacted
by,
density.
This
validated
using
existing
evidence,
focusing
polyphenisms
that
comprise
alternate
phenotypes
differ
rate:
‘heterokairic
polyphenisms’.
find
heterokairic
typically
fast
developing
(‘minor’)
slow
(‘major’)
prevalent
among
ectotherms.
How
shapes
depends
whether
minors
(or
majors)
mostly
expressed
at
low
high)
or
vice
versa.
Minor‐at‐low‐density
systems,
such
those
found
salamanders,
aphids
nematodes,
reflect
classic
life
history
predictions
growing,
populations
favour
short
times,
whilst
high‐density
slower
development.
Alternatively,
minor‐at‐high‐density
systems
allow
resource‐stressed
juveniles,
most
common
high‐densities,
still
mature
but
reducing
metabolic
costs.
propose
opposing
responses
prompt
different
feedbacks.
Our
work
highlights
crucial
plays
phenotype
construction,
consequences
it
have
for
(meta)population
evolution.
call
shift
away
from
focus
outcomes
adulthood
processes
construct
phenotypes.
Ultimately,
lead
more
mechanistic,
thus
predictive,
approach
understanding
adaptive
alternative
paces
within
ecological
evolutionary
contexts.
Read
free
Plain
Language
Summary
article
Journal
blog.
Global Change Biology,
Journal Year:
2024,
Volume and Issue:
30(3)
Published: March 1, 2024
Abstract
Microbes
affect
the
global
carbon
cycle
that
influences
climate
change
and
are
in
turn
influenced
by
environmental
change.
Here,
we
use
data
from
a
long‐term
whole‐ecosystem
warming
experiment
at
boreal
peatland
to
answer
how
temperature
CO
2
jointly
influence
communities
of
abundant,
diverse,
yet
poorly
understood,
non‐fungi
microbial
Eukaryotes
(protists).
These
microbes
ecosystem
function
directly
through
photosynthesis
respiration,
indirectly,
predation
on
decomposers
(bacteria
fungi).
Using
combination
high‐throughput
fluid
imaging
18S
amplicon
sequencing,
report
large
climate‐induced,
community‐wide
shifts
community
functional
composition
these
(size,
shape,
metabolism)
could
alter
overall
peatlands.
Importantly,
demonstrate
taxonomic
convergence
but
divergence
response
elevated
with
most
responses
being
contingent
organismal
size:
effects
reversed
amplified
larger
not
smaller
ones.
findings
show
interactive
rising
levels
structure
food
webs—a
fragile
stores
upwards
25%
all
terrestrial
is
increasingly
threatened
human
exploitation.
The American Naturalist,
Journal Year:
2024,
Volume and Issue:
205(3), P. 285 - 305
Published: Sept. 19, 2024
AbstractThe
metabolic
theory
of
ecology
(MTE)
aims
to
link
biophysical
constraints
on
individual
rates
the
emergence
patterns
at
population
and
ecosystem
scales.
Because
MTE
links
temperature's
kinetic
effects
metabolism
ecological
processes
higher
levels
organization,
it
holds
great
potential
mechanistically
predict
how
complex
systems
respond
warming
increased
temperature
fluctuations
under
climate
change.
To
scale
up
from
individuals
ecosystems,
applications
classical
implicitly
assume
that
focusing
steady-state
dynamics
averaging
responses
across
populations
adequately
capture
dominant
attributes
biological
systems.
However,
in
context
change,
frequent
perturbations
steady
state
rapid
changes
thermal
performance
curves
via
plasticity
evolution
are
almost
guaranteed.
Here,
we
explain
some
assumptions
made
when
applying
MTE's
simplest
canonical
expression
can
lead
blind
spots
understanding
change
affects
this
presents
an
opportunity
for
formal
expansion
theory.
We
review
existing
advances
direction
provide
a
decision
tree
identifying
dynamic
modifications
needed
certain
research
questions.
conclude
with
empirical
theoretical
challenges
be
addressed
more
increasingly
uncertain
world.
Ecology,
Journal Year:
2023,
Volume and Issue:
104(10)
Published: Aug. 25, 2023
Abstract
One
strategy
for
understanding
the
dynamics
of
any
complex
system,
such
as
a
community
competing
species,
is
to
study
parts
system
in
isolation.
Ecological
communities
can
be
decomposed
into
single
and
pairs
interacting
species.
This
reductionist
assumes
that
whole‐community
are
predictable
explainable
from
knowledge
species
assumption
will
violated
if
higher
order
interactions
(HOIs)
strong.
Theory
predicts
HOIs
should
common.
But
it
difficult
detect
HOIs,
infer
their
long‐term
consequences
coexistence,
solely
short‐term
data.
I
conducted
protist
microcosm
experiment
test
among
bacterivorous
ciliates,
sensitivity
environmental
context.
grew
three
ciliate
all
possible
combinations
at
each
two
resource
enrichment
levels,
used
population
dynamic
data
one‐
two‐species
treatments
parameterize
competition
model
level.
then
compared
predictions
parameterized
whole
(three‐species
treatment).
found
existence,
thus
strength,
was
environment
dependent.
strong
HOI
low
enrichment,
which
enabled
persistence
would
otherwise
have
been
competitively
excluded.
At
high
three‐species
could
predicted
dynamics,
provided
accounted
nonlinear
intraspecific
density
dependence.
The
results
provide
one
first
rigorous
demonstrations
demonstrate
context
dependence
HOIs.
create
challenges
predicting
explaining
coexistence
nature.