Characterization of the complete plastid genome and phylogenetic implication of Micranthes octopetala (Nakai) Y.I.Kim & Y.D.Kim (Saxifragaceae), endemic to Korea DOI Creative Commons
Tae-Hee Kim, Young‐Ho Ha, Sang-Chul Kim

et al.

Mitochondrial DNA Part B, Journal Year: 2023, Volume and Issue: 8(9), P. 967 - 972

Published: Sept. 2, 2023

Micranthes octopetala (Nakai) Y.I.Kim & Y.D. Kim et al. 2015, which belongs to the family Saxifragaceae, is a perennial herb endemic Korea. M. was originally treated as synonym of manchuriensis. However, in molecular phylogenetic analysis confirmed that an independent species. In this study, plastid genome sequenced for first time, and taxonomic position species identified. The complete has total length 149 751 bp (large single copy: 83 083 bp; small 17 196 inverted repeat: 24 736 bp), containing 130 genes, including 79 CDS, 30 tRNAs, 4 rRNAs. Moreover, absence intron rpl2 gene, common feature confirmed. Phylogenetic based on protein-coding genes from 21 revealed genus Micranthes, being sister other obtained study provides fundamental information future studies Micranthes.

Language: Английский

Chloroplast phylogenomics and the taxonomy of Saxifraga section Ciliatae (Saxifragaceae) DOI Creative Commons
Rui Yuan, Xiaolei Ma,

Zhuoxin Zhang

et al.

Ecology and Evolution, Journal Year: 2023, Volume and Issue: 13(1)

Published: Jan. 1, 2023

Abstract Comprising ca. 200 species, Saxifraga sect. Ciliatae is the most species‐rich section of s.str., whose center diversity in Tibeto‐Himalayan region. The infra‐sectional classification still debate due to high level species richness, as well remarkable variations habitat, morphology, physiology and life cycles. Subdivisions this proposed various taxonomic systems have not been adequately tested previous phylogenetic studies, partly low sampling density, but also use few DNA markers. In order achieve a more robust , complete chloroplast genomes 94 taxa from were analyzed, which 93 newly sequenced, assembled annotated. length plastomes range 143,479 159,938 bp, encoding 75 79 unique protein‐coding genes (PCGs). Analyses revealed conservation structural organization, gene arrangement, content. Gene loss changes IR boundaries detected extremely frequency. molecular tree concatenated PCGs genome sequences exhibited resolution support values confirms that monophyletic. Three well‐supported clades within agree relatively with subsectional taxonomy Gornall (1987), some minor modifications should be made. Firstly, monotypic subsection Cinerascentes abandoned its constituent S . cinerascens assigned subsect. Gemmiparae Secondly, subsections Rosulares Serpyllifoliae merged become Section thus comprises: Hirculoideae Engl. & Irmsch.; Gornall; Flagellares (C. B. Clarke) Irmsch. Hemisphaericae (Engl. Irmsch.) Gornall.

Language: Английский

Citations

6
Investigation of phylogenetic relationships within Saxifraga diversifolia complex (Saxifragaceae) based on restriction‐site associated DNA sequence markers DOI Creative Commons
Rui Yuan, Jiaxin Li, Xiaolei Ma

et al.

Ecology and Evolution, Journal Year: 2023, Volume and Issue: 13(11)

Published: Nov. 1, 2023

Abstract Subsect. Hirculoideae Engl. & Irmsch., belonging to Saxifraga sect. Ciliatae Haw., has high species richness. It can be divided into S. diversifolia , pseudohirculus and sinomontana complexes based on morphological characteristics. The with prominent leaf veins the posterior edge were placed in complex, which is mainly distributed eastern southern margins of Qinghai‐Tibetan Plateau. In this study, 53 samples, representing 15 33 described sequenced using Restriction‐site Associated DNA Sequence (RAD‐seq) technique. A total 111,938 high‐quality SNP loci screened investigate phylogenetic relationships within complex. result neighbor‐joining (NJ) tree shows that complex a paraphyletic group. Despite some inconsistencies as revealed by genetic structural analysis, clustering results representative reconstructed both NJ principal component analysis analyses support previous biogeographic evidences. addition, long‐distance gene flow events for 11 taxa detected respectively from implicans 1 2, maxionggouensis nigroglandulifera . These findings may improve our comprehension phylogeny, classification, evolution

Language: Английский

Citations

3
Complete chloroplast genome of Saxifraga fortunei var. pilosissima (Saxifragaceae) endemic to Ulleung-do island, Korea DOI Creative Commons
Jin-Suk Youn, Asif S. Tamboli, Woong Lee

et al.

Journal of Asia-Pacific Biodiversity, Journal Year: 2024, Volume and Issue: 17(4), P. 792 - 795

Published: June 29, 2024

The Saxifraga fortunei var. pilosissima Nakai is an endemic species to Ulleung-do island. Here we report the complete chloroplast genome sequence of S. pilosissima, which was 151,186 bp in total length with large single copy (LSC) region 83,536 bp, small (SSC) 17,644 and two inverted repeat (IR) regions 25,003 bp. contained 131 genes, including 86 protein-coding, 37 tRNA, 8 rRNA GC (guanine-cytosine) content 37.8%. Additionally, found that exhibited intron loss rpl2 gene. Within IR region, six protein-coding seven tRNA four genes were duplicated. In there are a 17 containing introns. Among them, 15 contain one each, while Phylogenetic analysis based on representative genomes Saxifragaceae suggested genus monophyletic placed sect. Irregulares Haw. grouped fortunei, rufescens, stolonifera strong maximum likelihood bootstrap support value.

Language: Английский

Citations

0
Chloroplast genome of plantago major , a medicinal plant in China DOI Creative Commons
Yingying Liu,

Dongnan Hu,

Weihuai Zeng

et al.

Mitochondrial DNA Part B, Journal Year: 2024, Volume and Issue: 9(7), P. 881 - 885

Published: July 2, 2024

(Plantaginaceae) is a medicinal plant in Chinese folk culture, known for its famous components such as plantagomain. In this study, we conducted genome sequencing of

Language: Английский

Citations

0
The complete plastome of Saxifraga giraldiana Engler and its phylogenetic analysis DOI Creative Commons
Xin Liang,

Luxuan Yang,

Xiaoting Xu

et al.

Mitochondrial DNA Part B, Journal Year: 2024, Volume and Issue: 9(9), P. 1157 - 1161

Published: Aug. 30, 2024

Saxifraga giraldiana Engler is a common subalpine and alpine plant belonging to Saxifragaceae. However, the genetic diversity of this species has remained be explored. In study, we have assembled characterized complete chloroplast genome S. giraldiana, filling knowledge gap uncovering its composition. The 147,267 bp long contains 131 genes, including 85 protein-coding 38 tRNA eight rRNA genes. Furthermore, performed phylogenetic analysis 19 representative within Saxifraga. As result, found that together with implicans stellariifolia, forms monophyletic group. These findings implications for conservation utilization giraldiana.

Language: Английский

Citations

0
Characterization of the complete plastid genome and phylogenetic implication of Micranthes octopetala (Nakai) Y.I.Kim & Y.D.Kim (Saxifragaceae), endemic to Korea DOI Creative Commons
Tae-Hee Kim, Young‐Ho Ha, Sang-Chul Kim

et al.

Mitochondrial DNA Part B, Journal Year: 2023, Volume and Issue: 8(9), P. 967 - 972

Published: Sept. 2, 2023

Micranthes octopetala (Nakai) Y.I.Kim & Y.D. Kim et al. 2015, which belongs to the family Saxifragaceae, is a perennial herb endemic Korea. M. was originally treated as synonym of manchuriensis. However, in molecular phylogenetic analysis confirmed that an independent species. In this study, plastid genome sequenced for first time, and taxonomic position species identified. The complete has total length 149 751 bp (large single copy: 83 083 bp; small 17 196 inverted repeat: 24 736 bp), containing 130 genes, including 79 CDS, 30 tRNAs, 4 rRNAs. Moreover, absence intron rpl2 gene, common feature confirmed. Phylogenetic based on protein-coding genes from 21 revealed genus Micranthes, being sister other obtained study provides fundamental information future studies Micranthes.

Language: Английский

Citations

0