Journal of Translational Medicine,
Journal Year:
2024,
Volume and Issue:
22(1)
Published: Nov. 15, 2024
Intrahepatic
cholangiocarcinoma
(ICC)
is
a
malignant
tumor
with
poor
prognosis,
predominantly
CA19-9
positive.
High
levels
correlate
increased
aggressiveness
and
worse
outcomes.
This
study
employs
multi-omics
analysis
to
reveal
molecular
features
identify
therapeutic
targets
of
positive
ICC,
aiming
support
individualized
treatment.
Data
from
seven
clinical
cohorts,
two
whole-exome
sequencing
six
RNA
sequencing/microarray
one
proteomic
cohort,
20
single-cell
samples,
spatial
transcriptome
sample
were
analyzed.
Key
findings
validated
on
tissue
microarrays
52
ICC
samples.
exhibited
poorer
OS
(median
24.1
v.s.
51.5
months)
RFS
11.7
28.2
compared
negative
group
(all
P
<
0.05).
Genomic
revealed
higher
KRAS
mutation
frequency
in
the
greater
prevalence
IDH1/2
mutations
Transcriptomic
indicated
upregulated
glycolysis
pathways
ICC.
Single-cell
identified
specific
glycolysis-related
cell
subclusters
associated
including
Epi_SLC2A1,
CAF_VEGFA,
Mph_SPP1.
Higher
hypoxia
led
metabolic
reprogramming
promoted
these
cells'
formation.
These
cells
formed
interactive
communities
promoting
epithelial-mesenchymal
transition
(EMT)
angiogenesis.
Drug
sensitivity
potential
drugs.
systematically
elucidated
clinical,
genomic,
transcriptomic,
immune
It
reveals
glycolysis-associated
cellular
their
cancer-promoting
mechanisms,
enhancing
our
understanding
laying
groundwork
for
strategies.
Journal of Hematology & Oncology,
Journal Year:
2022,
Volume and Issue:
15(1)
Published: Oct. 25, 2022
Abstract
After
decades
of
efforts,
we
have
recently
made
progress
into
targeting
KRAS
mutations
in
several
malignancies.
Known
as
the
‘holy
grail’
targeted
cancer
therapies,
is
most
frequently
mutated
oncogene
human
Under
normal
conditions,
shuttles
between
GDP-bound
‘off’
state
and
GTP-bound
‘on’
state.
Mutant
constitutively
activated
leads
to
persistent
downstream
signaling
oncogenesis.
In
2013,
improved
understanding
biology
newer
drug
designing
technologies
led
crucial
discovery
a
cysteine
drug-binding
pocket
mutant
G12C
protein.
Covalent
inhibitors
that
block
were
successfully
developed
sotorasib
was
first
inhibitor
be
approved,
with
more
pipeline.
Simultaneously,
effects
on
tumour
microenvironment
also
discovered,
partly
owing
universal
use
immune
checkpoint
inhibitors.
this
review,
discuss
discovery,
biology,
function
We
relationship
microenvironment,
therapeutic
strategies
target
KRAS.
Finally,
review
current
clinical
evidence
ongoing
trials
novel
agents
shine
light
resistance
pathways
known
so
far.
Annals of Oncology,
Journal Year:
2022,
Volume and Issue:
33(12), P. 1269 - 1283
Published: Sept. 9, 2022
Targeted
therapies
have
transformed
clinical
management
of
advanced
biliary
tract
cancer
(BTC).
Cell-free
DNA
(cfDNA)
analysis
is
an
attractive
approach
for
genomic
profiling
that
overcomes
many
limitations
traditional
tissue-based
analysis.
We
examined
cfDNA
as
a
tool
to
inform
patients
with
BTC
and
generate
novel
insights
into
tumor
biology.We
analyzed
next-generation
sequencing
data
2068
samples
from
1671
generated
Guardant360.
carried
out
annotation
on
multi-institutional
subset
(n
=
225)
assess
intra-patient
cfDNA-tumor
concordance
the
association
variant
allele
fraction
(VAF)
outcomes.Genetic
alterations
were
detected
in
84%
patients,
targetable
44%
patients.
Fibroblast
growth
factor
receptor
2
(FGFR2)
fusions,
isocitrate
dehydrogenase
1
(IDH1)
mutations,
BRAF
V600E
clonal
majority
cases,
affirming
these
early
driver
events
BTC.
Concordance
between
tissue
mutation
detection
was
high
IDH1
mutations
(87%)
(100%),
low
FGFR2
fusions
(18%).
uncovered
putative
mechanisms
resistance
targeted
therapies,
including
cysteine
residue
(FGFR2
C492F)
which
covalent
FGFR
inhibitors
bind.
High
pre-treatment
VAF
associated
poor
prognosis
shorter
response
chemotherapy
therapy.
Finally,
we
report
frequency
promising
targets
currently
under
investigation
other
solid
tumors,
KRAS
G12C
(1.0%),
G12D
(5.1%),
PIK3CA
(6.8%),
ERBB2
amplifications
(4.9%).These
findings
largest
most
comprehensive
study
date
highlight
utility
current
this
disease.
Characterization
oncogenic
drivers
therapeutic
will
drug
development
efforts
reduce
mortality
Nature Communications,
Journal Year:
2023,
Volume and Issue:
14(1)
Published: Feb. 6, 2023
Abstract
HER2
mutations
are
infrequent
genomic
events
in
biliary
tract
cancers
(BTCs).
Neratinib,
an
irreversible,
pan-HER,
oral
tyrosine
kinase
inhibitor,
interferes
with
constitutive
receptor
activation
and
has
activity
-mutant
tumours.
SUMMIT
is
open-label,
single-arm,
multi-cohort,
phase
2,
‘basket’
trial
of
neratinib
patients
solid
tumours
harbouring
oncogenic
somatic
(ClinicalTrials.gov:
NCT01953926).
The
primary
objective
the
BTC
cohort,
which
now
complete,
first
response
rate
(ORR)
to
240
mg
orally
daily.
Secondary
objectives
include
confirmed
ORR,
clinical
benefit
rate,
progression-free
survival,
duration
response,
overall
safety
tolerability.
Genomic
analyses
were
exploratory.
Among
25
treatment-refractory
(11
cholangiocarcinoma,
10
gallbladder,
4
ampullary
cancers),
ORR
16%
(95%
CI
4.5–36.1%).
most
common
S310F
(n
=
11;
48%)
V777L
4;
17%).
Outcomes
appear
worse
for
or
those
co-occurring
TP53
CDKN2A
alterations.
Loss
amplified
acquisition
multiple
previously
undetected
co-mutations
identified
at
progression
one
responder.
Diarrhoea
adverse
event,
any-grade
diarrhoea
14
(56%).
Although
demonstrates
antitumour
refractory
mutations,
endpoint
was
not
met
combinations
may
be
explored.
American Journal of Transplantation,
Journal Year:
2021,
Volume and Issue:
22(3), P. 823 - 832
Published: Dec. 2, 2021
Intrahepatic
cholangiocarcinoma
(iCCA)
has
previously
been
considered
a
contraindication
to
liver
transplantation
(LT).
However,
recent
series
showed
favorable
outcomes
for
LT
after
neoadjuvant
therapy.
Our
center
developed
protocol
therapy
and
patients
with
locally
advanced,
unresectable
iCCA
in
2010.
Patients
undergoing
were
required
demonstrate
disease
stability
6
months
on
no
extrahepatic
disease.
During
the
study
period,
32
listed
18
underwent
LT.
For
transplanted
patients,
median
number
of
tumors
was
2,
cumulative
tumor
diameter
10.4
cm.
receiving
had
an
overall
survival
at
1-,
3-,
5-years
100%,
71%,
57%.
Recurrences
occurred
seven
treated
systemic
resection.
The
population
higher
than
expected
proportion
genetic
alterations
fibroblast
growth
factor
receptor
(FGFR)
DNA
damage
repair
pathways.
These
data
support
as
treatment
highly
selected
iCCA.
Further
studies
identify
criteria
factors
predicting
are
warranted.
Frontiers in Medicine,
Journal Year:
2022,
Volume and Issue:
9
Published: March 31, 2022
Intrahepatic
cholangiocarcinoma
(iCCA)
is
an
aggressive
primary
liver
malignancy
with
increasing
incidence
worldwide.
Recently,
histopathologic
classification
of
small
duct
type
and
large
iCCA
has
been
introduced.
Both
these
types
tumors
exhibit
differences
in
clinicopathological
features,
mutational
profiles,
prognosis.
Small
composed
non-mucin-producing
cuboidal
cells,
whereas
mucin-producing
columnar
reflecting
different
cells
origin.
Large
shows
more
invasive
growth
poorer
prognosis
than
iCCA.
The
background
often
chronic
disease
related
to
hepatitis
B
or
C
viral
infection,
alcoholic
non-alcoholic
fatty
disease/steatohepatitis,
contrast
that
hepatolithiasis
fluke
infection.
Cholangiolocarcinoma
a
variant
naïve-looking
forming
cords
ductule-like
structures,
better
the
conventional
type.
Fibrous
tumor
stroma,
one
characteristic
features
iCCA,
contains
activated
fibroblasts
intermixed
innate
adaptive
immune
cells.
stroma
(mature
versus
immature)
are
behavior
Low
tumor-infiltrating
lymphocyte
density,
KRAS
alteration,
chromosomal
instability
immune-suppressive
microenvironments
resistance
programmed
death
1/
ligand
1
blockade.
Data
from
recent
large-scale
exome
analyses
have
revealed
heterogeneity
molecular
profiles
showing
frequent
BAP1
,
IDH1/2
hotspot
mutations
FGFR2
fusion,
TP53
SMAD4
observed
Multi-omics
proposed
several
classifications
including
inflammation
class
proliferation
class.
enriched
inflammatory
signaling
pathways
expression
cytokines,
while
oncogenic
pathways.
Diverse
pathologic
its
associated
multi-omics
characteristics
currently
under
active
investigation,
thereby
providing
insights
into
precision
therapeutics
for
patients
This
review
provides
latest
knowledge
on
ranging
microenvironment
genomic
transcriptomic
research.
Cancer Immunology Research,
Journal Year:
2022,
Volume and Issue:
10(7), P. 811 - 828
Published: May 20, 2022
Abstract
Intrahepatic
cholangiocarcinoma
(ICC)
is
a
relatively
rare
but
highly
aggressive
tumor
type
that
responds
poorly
to
chemotherapy
and
immunotherapy.
Comprehensive
molecular
characterization
of
ICC
essential
for
the
development
novel
therapeutics.
Here,
we
constructed
two
independent
cohorts
from
clinic
centers.
A
comprehensive
multiomics
analysis
via
proteomic,
whole-exome
sequencing
(WES),
single-cell
RNA
(scRNA-seq)
was
performed.
Novel
subtypes
were
derived
in
training
cohort
(n
=
110)
using
proteomic
signatures
their
associated
activated
pathways,
which
further
validated
validation
41).
Three
subtypes,
chromatin
remodeling,
metabolism,
chronic
inflammation,
with
distinct
prognoses
identified.
The
inflammation
subtype
poor
prognosis.
Our
random
forest
algorithm
revealed
mutation
lysine
methyltransferase
2D
(KMT2D)
frequently
occurred
metabolism
lower
inflammatory
activity.
scRNA-seq
identified
an
APOE+C1QB+
macrophage
subtype,
showed
capacity
reshape
contribute
prognosis
ICC.
Altogether,
transcriptome-assisted
analysis,
tumor-associated
macrophages
as
potential
immunotherapy
targets
against
Cancers,
Journal Year:
2024,
Volume and Issue:
16(15), P. 2752 - 2752
Published: Aug. 2, 2024
The
isocitrate
dehydrogenase
1
and
2
(IDH1
IDH2)
enzymes
are
involved
in
key
metabolic
processes
human
cells,
regulating
differentiation,
proliferation,
oxidative
damage
response.
IDH
mutations
have
been
associated
with
tumor
development
progression
various
solid
tumors
such
as
glioma,
cholangiocarcinoma,
chondrosarcoma,
other
types
become
crucial
markers
molecular
classification
prognostic
assessment.
intratumoral
serum
levels
of
D-2-hydroxyglutarate
(D-2-HG)
could
serve
diagnostic
biomarkers
for
identifying
mutant
(IDHmut)
tumors.
As
a
result,
an
increasing
number
clinical
trials
evaluating
targeted
treatments
IDH1/IDH2
mutations.
Recent
studies
shown
that
the
focus
these
new
therapeutic
strategies
is
not
only
neomorphic
activity
IDHmut
but
also
epigenetic
shift
induced
by
potential
role
combination
treatments.
Here,
we
provide
overview
current
knowledge
about
tumors,
particular
on
available
IDH-targeted
emerging
results
from
aiming
to
explore
tumor-specific
features
identify
benefit
therapies
their
strategies.
An
insight
into
future
perspectives
roles
circulating
radiomic
included.
JAMA Network Open,
Journal Year:
2023,
Volume and Issue:
6(3), P. e231476 - e231476
Published: March 3, 2023
Importance
BRAF
variants
are
associated
with
tumor
progression;
however,
the
prevalence
of
variant
subtypes
and
their
association
disease
characteristics,
prognosis,
targeted
therapy
response
in
patients
intrahepatic
cholangiocarcinoma
(ICC)
largely
unknown.
Objective
To
explore
ICC.
Design,
Setting,
Participants
In
this
cohort
study,
1175
who
underwent
curative
resection
for
ICC
from
January
1,
2009,
through
December
31,
2017,
were
evaluated
at
a
single
hospital
China.
Whole-exome
sequencing,
Sanger
sequencing
performed
to
identify
variants.
The
Kaplan-Meier
method
log-rank
test
used
compare
overall
survival
(OS)
disease-free
(DFS).
Univariate
multivariate
analyses
using
Cox
proportional
hazards
regression.
Associations
between
tested
6
-variant,
patient-derived
organoid
lines
3
patient
donors
those
lines.
Data
analyzed
June
2021,
March
15,
2022.
Interventions
Hepatectomy
Main
Outcomes
Measures
OS
DFS.
Results
Of
ICC,
mean
(SD)
age
was
59.4
(10.4)
years
701
(59.7%)
men.
A
total
20
different
somatic
variance
affecting
49
(4.2%)
identified;
V600E
most
frequent
allele
cohort,
accounting
27%
identified
variants,
followed
by
K601E
(14%),
D594G
(12%),
N581S
(6%).
Compared
non-V600E
more
likely
have
large
size
(10
13
[77%]
vs
12
36
[33%];
P
=
.007),
multiple
tumors
(7
[54%]
8
[22%];
.04),
vascular/bile
duct
invasion
.04).
Multivariate
analysis
revealed
that
but
not
or
poor
(hazard
ratio
[HR],
1.87;
95%
CI,
1.05-3.33;
.03)
DFS
(HR,
1.66;
1.03-2.97;
There
also
broad
differences
among
organoids
sensitivity
MEK
inhibitors.
Conclusions
Relevance
findings
study
suggest
there
Identifying
classifying
may
be
able
help
guide
precise
treatment