BMC Cancer,
Journal Year:
2025,
Volume and Issue:
25(1)
Published: Jan. 15, 2025
Primary
pulmonary
lymphoepithelial
carcinoma
(pLEC)
is
a
subtype
of
non-small
cell
lung
cancer
(NSCLC)
characterized
by
Epstein-Barr
virus
(EBV)
infection.
However,
the
molecular
pathogenesis
pLEC
remains
poorly
understood.
In
this
study,
we
explored
using
whole-exome
sequencing
(WES)
and
RNA-whole-transcriptome
(RNA-seq)
technologies.
Datasets
normal
tissue,
other
types
NSCLC,
EBV-positive
nasopharyngeal
(EBV+-NPC)
were
obtained
from
public
databases.
Furthermore,
described
gene
signatures,
viral
integration,
quantification,
death
immune
infiltration
pLEC.
Compared
with
NSCLC
EBV+-NPC,
patients
exhibited
lower
somatic
mutation
burden
extensive
copy
number
deletions,
including
1p36.23,
3p21.1,
7q11.23,
11q23.3.
Integration
EBV
associated
dysregulation
expression,
CNV-altered
regions
coinciding
integration
sites.
Specifically,
ZBTB16
ERRFI1
downregulated
CNV
loss,
FOXD
family
genes
overexpressed
gain.
Decreased
expression
might
be
favorable
prognosis
in
patients,
these
enhanced
cytotoxicity.
NPC,
has
distinct
characteristics.
aberrant
genes,
as
well
loss
CNVs,
may
play
crucial
role
further
research
needed
to
assess
potential
biomarker.
Journal of Clinical Investigation,
Journal Year:
2020,
Volume and Issue:
130(7), P. 3560 - 3575
Published: March 31, 2020
Immune
microenvironment
plays
a
critical
role
in
lung
cancer
control
versus
progression
and
metastasis.
In
this
investigation,
we
explored
the
effect
of
tumor-infiltrating
lymphocyte
subpopulations
on
biology
by
studying
vitro
cocultures,
vivo
mouse
models,
human
tissue.
Lymphocyte
conditioned
media
(CM)
induced
epithelial-mesenchymal
transition
(EMT)
migration
both
primary
cells
cell
lines.
Correspondingly,
major
accumulation
Th9
Th17
was
detected
tissue
correlated
with
poor
survival.
Coculturing
Th9/Th17
or
exposing
them
to
respective
CM
EMT
modulated
expression
profile
genes
implicated
These
features
were
reproduced
signatory
cytokines
IL-9
IL-17,
gene
regulatory
profiles
evoked
these
partly
overlapping
complementary.
Coinjection
tumor
WT,
Rag1-/-,
Il9r-/-,
Il17ra-/-
mice
altered
growth
Accordingly,
inhibition
IL-17
neutralizing
antibodies
decreased
slowed
conclusion,
lymphocytes
induce
EMT,
thereby
promoting
metastatic
spreading
offering
potentially
novel
therapeutic
strategies.
Biomedical Optics Express,
Journal Year:
2020,
Volume and Issue:
11(6), P. 3195 - 3195
Published: May 8, 2020
Hyperspectral
imaging
(HSI)
and
multispectral
(MSI)
technologies
have
the
potential
to
transform
fields
of
digital
computational
pathology.
Traditional
digitized
histopathological
slides
are
imaged
with
RGB
imaging.
Utilizing
HSI/MSI,
spectral
information
across
wavelengths
within
beyond
visual
range
can
complement
spatial
for
creation
computer-aided
diagnostic
tools
both
stained
unstained
histological
specimens.
In
this
systematic
review,
we
summarize
methods
uses
HSI/MSI
staining
color
correction,
immunohistochemistry,
autofluorescence,
research.
Studies
include
hematology,
breast
cancer,
head
neck
skin
diseases
central
nervous,
gastrointestinal,
genitourinary
systems.
The
use
suggest
an
improvement
in
detection
clinical
practice
compared
traditional
analysis,
brings
new
opportunities
analysis
samples,
such
as
or
alleviating
inter-laboratory
variability
samples.
Nevertheless,
number
studies
field
is
currently
limited,
more
research
needed
confirm
advantages
technology
conventional
imagery.
Virchows Archiv,
Journal Year:
2018,
Volume and Issue:
474(4), P. 511 - 522
Published: Nov. 23, 2018
Clinical
success
of
immunotherapy
is
driving
the
need
for
new
prognostic
and
predictive
assays
to
inform
patient
selection
stratification.
This
requirement
can
be
met
by
a
combination
computational
pathology
artificial
intelligence.
Here,
we
critically
assess
approaches
supporting
development
standardized
methodology
in
assessment
immune-oncology
biomarkers,
such
as
PD-L1
immune
cell
infiltrates.
We
examine
immunoprofiling
through
spatial
analysis
tumor-immune
interactions
multiplexing
technologies
predictor
response
cancer
treatment.
Further,
discuss
how
integrated
bioinformatics
enable
amalgamation
complex
morphological
phenotypes
with
multiomics
datasets
that
drive
precision
medicine.
provide
an
outline
machine
learning
(ML)
intelligence
tools
illustrate
fields
application
immune-oncology,
pattern-recognition
large
deep
survival
analysis.
Synergies
surgical
analyses
are
expected
improve
stratification
immuno-oncology.
propose
future
clinical
demands
will
best
(1)
dedicated
research
at
interface
bioinformatics,
supported
professional
societies,
(2)
integration
data
sciences
digital
image
education
pathologists.
Scientific Reports,
Journal Year:
2019,
Volume and Issue:
9(1)
Published: Dec. 27, 2019
Abstract
The
anti-tumour
immune
response
is
critical
to
patient
prognosis
in
colorectal
cancer
(CRC).
aim
of
this
study
was
investigate
infiltration
B
lymphocytes
into
CRC
tumours,
and
their
clinical
relevance,
prognostic
value
relation
other
cell
subsets.
We
used
multiplexed
immunohistochemistry
multispectral
imaging
assay
the
amount
infiltrating
CD20
+
along
with
CD8
cytotoxic
T
cells,
FOXP3
regulatory
CD68
macrophages
CD66b
neutrophils,
316
archival
tissue
specimens.
A
higher
density
associated
tumours
right
colon
(
P
=
0.025)
lower
stages
0.009).
Furthermore,
patients
whose
were
highly
infiltrated
by
had
a
significantly
improved
disease-specific
survival
(HR
0.45,
95%
CI
0.28–0.73,
0.001),
which
remained
significant
multivariable
analysis.
positively
<
part
role
found
be
cooperative
effect
between
these
lymphocyte
Our
results
support
favourable
tumour-infiltrating
CRC.
suggested.
Molecular Cancer,
Journal Year:
2021,
Volume and Issue:
20(1)
Published: Dec. 1, 2021
Non-small
cell
lung
cancer
(NSCLC)
is
the
most
common
type
of
human
cancers,
which
has
diverse
pathological
features.
Although
many
signaling
pathways
and
therapeutic
targets
have
been
defined
to
play
important
roles
in
NSCLC,
limiting
efficacies
achieved.Bioinformatics
methods
were
used
identify
differential
long
non-coding
RNA
expression
NSCLC.
Real-time
RT-PCR
experiments
examine
pattern
lncRNA
PKMYT1AR,
miR-485-5p.
Both
vitro
vivo
functional
assays
performed
investigate
role
PKMYT1AR/miR-485-5p/PKMYT1
axis
on
regulating
proliferation,
migration
tumor
growth.
Dual
luciferase
reporter
assay,
fluorescent
situ
hybridization
(FISH),
immunoblot,
co-immunoprecipitation
verify
molecular
mechanism.Here,
we
a
human-specific
(lncRNA,
ENST00000595422),
termed
PKMYT1AR
(PKMYT1
associated
lncRNA),
that
induced
NSCLC
by
Yin
Yang
1
(YY1)
factor,
especially
cancerous
lines
(H358,
H1975,
H1299,
H1650,
A549
SPC-A1)
compared
normal
bronchial
epithelium
line
(BEAS-2B).
We
show
high
correlates
with
worse
clinical
outcome,
knockdown
inhibits
xenograft
formation
abilities.
Bioinformatic
analysis
assay
demonstrate
directly
interacts
miR-485-5p
attenuate
inhibitory
its
downstream
oncogenic
factor
PKMYT1
(the
protein
kinase,
membrane-associated
tyrosine/threonine
1)
Furthermore,
uncover
downregulated
both
peripheral
blood
serum
isolated
from
patients
reciprocal
control
groups.
Consistently,
forced
proliferation
abilities
cells.
Moreover,
provide
evidence
showing
targeting
antisense
oligonucleotide
(ASO)
dramatically
inhibit
growth
vivo.
Mechanistic
study
shows
PKMYT1AR/
/PKMYT1
promotes
stem
cells
(CSCs)
maintenance
via
inhibiting
β-TrCP1
mediated
ubiquitin
degradation
β-catenin
proteins,
turn
causes
enhanced
tumorigenesis.Our
findings
reveal
critical
PKMYT1AR/miR-485-5p
during
progression,
could
be
as
novel
future.
Cancers,
Journal Year:
2019,
Volume and Issue:
11(3), P. 283 - 283
Published: Feb. 27, 2019
As
targeted
molecular
therapies
and
immuno-oncology
have
become
pivotal
in
the
management
of
patients
with
lung
cancer,
essential
requirement
for
high
throughput
analyses
clinical
validation
biomarkers
has
even
more
intense,
response
rates
maintained
20%–30%
range.
Moreover,
list
treatment
alternatives,
including
combination
therapies,
is
rapidly
evolving.
The
profiling
specific
tumor-associated
immune
contexture
may
be
predictive
or
resistance
to
these
therapeutic
strategies.
Multiplexed
immunohistochemistry
an
effective
proficient
approach
simultaneously
identify
proteins
abnormalities,
determine
spatial
distribution
activation
state
cells,
as
well
presence
immunoactive
expression.
This
method
highly
advantageous
investigating
evasion
mechanisms
discovering
potential
assess
action
predict
a
given
treatment.
review
provides
views
on
current
technological
status
evidence
applications
multiplexing
how
it
could
applied
optimize
cancer.
Cancer Discovery,
Journal Year:
2021,
Volume and Issue:
11(6), P. 1490 - 1507
Published: Feb. 9, 2021
Abstract
Cancer
evolution
determines
molecular
and
morphologic
intratumor
heterogeneity
challenges
the
design
of
effective
treatments.
In
lung
adenocarcinoma,
disease
progression
prognosis
are
associated
with
appearance
morphologically
diverse
tumor
regions,
termed
histologic
patterns.
However,
link
between
features
remains
elusive.
Here,
we
generated
multiomics
spatially
resolved
profiles
patterns
from
primary
which
integrated
data
>2,000
patients.
The
transition
indolent
to
aggressive
was
not
driven
by
genetic
alterations
but
epigenetic
transcriptional
reprogramming
reshaping
cancer
cell
identity.
A
signature
quantifying
this
an
independent
predictor
patient
in
multiple
human
cohorts.
Within
individual
tumors,
highly
multiplexed
protein
spatial
profiling
revealed
coexistence
immune
desert,
inflamed,
excluded
matched
pattern
composition.
Our
results
provide
a
detailed
map
adenocarcinoma
heterogeneity,
tracing
nongenetic
routes
evolution.
Significance:
Lung
adenocarcinomas
classified
based
on
prevalence.
tumors
exhibit
unknown
features.
We
characterized
mechanisms
underlying
markers
predicting
prognosis.
Intratumor
determined
microenvironments,
warranting
their
study
context
current
immunotherapies.
This
article
is
highlighted
Issue
feature,
p.
1307
Archives of Pathology & Laboratory Medicine,
Journal Year:
2019,
Volume and Issue:
144(6), P. 706 - 724
Published: Nov. 12, 2019
Context.—
Cancer
immunotherapy
provides
unprecedented
rates
of
durable
clinical
benefit
to
late-stage
cancer
patients
across
many
tumor
types,
but
there
remains
a
critical
need
for
biomarkers
accurately
predict
response.
Although
some
tests
are
associated
with
approved
therapies
and
considered
validated,
other
still
emerging
at
various
states
translational
exploration.
Objective.—
To
provide
pathologists
current
practical
update
on
the
evolving
field
testing.
The
scientific
background,
data,
testing
methodology
following
reviewed:
programmed
death
ligand-1
(PD-L1),
mismatch
repair,
microsatellite
instability,
mutational
burden,
polymerase
δ
ɛ
mutations,
neoantigens,
tumor-infiltrating
lymphocytes,
transcriptional
signatures
immune
responsiveness,
resistance
biomarkers,
microbiome.
Data
Sources.—
Selected
publications
trial
data
representing
immunotherapy.
Conclusions.—
field,
including
use
biomarker
patient
response,
is
in
evolution.
PD-L1,
instability
helping
guide
US
Food
Drug
Administration–approved
therapies,
better
predictors
response
resistance.
Several
categories
characteristics
underlying
responsiveness
may
represent
next
generation
predictive
biomarkers.
Pathologists
have
important
roles
responsibilities
as
continues
develop,
leadership
studies,
exploration
novel
accurate
timely
implementation
newly
validated
companion
diagnostics.
EBioMedicine,
Journal Year:
2023,
Volume and Issue:
88, P. 104452 - 104452
Published: Jan. 30, 2023
Cancer
immunity
is
based
on
the
interaction
of
a
multitude
cells
in
spatial
context
tumour
tissue.
Clinically
relevant
immune
signatures
are
therefore
anticipated
to
fundamentally
improve
accuracy
predicting
disease
progression.Through
multiplex
situ
analysis
we
evaluated
15
cell
classes
1481
samples.
Single-cell
and
bulk
RNAseq
data
sets
were
used
for
functional
validation
prognostic
predictive
associations.By
combining
information
anti-tumoural
CD8+
lymphocytes
supportive
CD68+CD163+
macrophages
colorectal
cancer
generated
signature
activation
(SIA).
The
impact
SIA
was
independent
conventional
parameters
comparable
with
state-of-art
score.
also
associated
patient
survival
oesophageal
adenocarcinoma,
bladder
cancer,
lung
adenocarcinoma
melanoma,
but
not
endometrial,
ovarian
squamous
carcinoma.
We
identified
as
major
producers
complement
C1q,
which
could
serve
surrogate
marker
this
macrophage
subset.
Consequently,
RNA-based
version
(ratio
CD8A
C1QA)
from
these
six
types.
Finally,
CD8A/C1QA
mRNA
ratio
response
checkpoint
inhibitor
therapy.Our
findings
extend
current
concepts
procure
microenvironment
provide
an
high
clinical
potential
common
human
types.Swedish
Society,
Lions
Foundation,
Selanders
P.O.
Zetterling
U-CAN
supported
by
SRA
CancerUU,
Uppsala
University
Region
Uppsala.