Plant Science, Journal Year: 2023, Volume and Issue: 336, P. 111852 - 111852
Published: Sept. 1, 2023
Language: Английский
The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 900, P. 165832 - 165832
Published: July 29, 2023
Language: Английский
Citations
124
Molecular Horticulture, Journal Year: 2022, Volume and Issue: 2(1)
Published: July 23, 2022
Over the past decade, systems biology and plant-omics have increasingly become main stream in plant research. New developments mass spectrometry bioinformatics tools, methodological schema to integrate multi-omics data leveraged recent advances proteomics metabolomics. These progresses are driving a rapid evolution field of research, greatly facilitating our understanding mechanistic aspects metabolisms interactions plants with their external environment. Here, we review MS-based metabolomics tools workflows special focus on applications research using several case studies related stress response, gene/protein function characterization, metabolic signaling pathways exploration, natural product discovery. We also present projection concerning future perspectives development including challenges for system biology. This is intended provide readers an overview how advanced MS technology, integrated application can be used advance
Language: Английский
Citations
70
The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 906, P. 167756 - 167756
Published: Oct. 11, 2023
Language: Английский
Citations
46
International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(3), P. 1918 - 1918
Published: Feb. 5, 2024
Genome-wide association studies (GWAS) have emerged as a powerful tool for unraveling intricate genotype-phenotype across various species. Maize (
Language: Английский
Citations
27
Nature Genetics, Journal Year: 2025, Volume and Issue: unknown
Published: Feb. 17, 2025
Language: Английский
Citations
2
International Journal of Molecular Sciences, Journal Year: 2022, Volume and Issue: 23(19), P. 12053 - 12053
Published: Oct. 10, 2022
The major challenges that agriculture is facing in the twenty-first century are increasing droughts, water scarcity, flooding, poorer soils, and extreme temperatures due to climate change. However, most crops not tolerant climatic environments. aim near future, a world with hunger an population, breed and/or engineer tolerate abiotic stress higher yield. Some crop varieties display certain degree of tolerance, which has been exploited by plant breeders develop thrive under conditions. Moreover, long list genes involved tolerance have identified characterized molecular techniques overexpressed individually transformation experiments. Nevertheless, phenotypes polygenetic traits, current genomic tools dissecting exploit their use accelerating genetic introgression using markers or site-directed mutagenesis such as CRISPR-Cas9. In this review, we describe mechanisms sense adverse conditions examine discuss classic new select improve crops.
Language: Английский
Citations
50
BioTechnologia, Journal Year: 2022, Volume and Issue: 103(1), P. 81 - 93
Published: Jan. 1, 2022
ENWEndNote BIBJabRef, Mendeley RISPapers, Reference Manager, RefWorks, Zotero AMA Cong Gan W, P.K. Ling A. CRISPR/Cas9 in plant biotechnology: applications and challenges. BioTechnologia. 2022;103(1):81-93. doi:10.5114/bta.2022.113919. APA Gan, W., & Ling, (2022). BioTechnologia, 103(1), 81-93. https://doi.org/10.5114/bta.2022.113919 Chicago Wen, Anna Ling. 2022. "CRISPR/Cas9 challenges". BioTechnologia 103 (1): Harvard pp.81-93. MLA Wen et al. challenges." vol. 103, no. 1, 2022, pp. Vancouver
Language: Английский
Citations
42
Molecular Plant, Journal Year: 2023, Volume and Issue: 16(8), P. 1252 - 1268
Published: July 27, 2023
Advances in DNA sequencing technology have sparked a genomics revolution, driving breakthroughs plant genetics and crop breeding. Recently, the focus has shifted from cataloging genetic diversity plants to exploring their functional significance delivering beneficial alleles for improvement. This transformation been facilitated by increasing adoption of whole-genome resequencing. In this review, we summarize current progress population-based genome resequencing studies how these affect A total 187 land 163 countries resequenced, comprising 54 413 accessions. As part efforts 367 traits surveyed 86 genome-wide association conducted. Economically important crops, particularly cereals, vegetables, legumes, dominated efforts, leaving gap 49 orders, including Lycopodiales, Liliales, Acorales, Austrobaileyales, Commelinales. The resequenced germplasm is distributed across diverse geographic locations, providing global perspective on genomics. We highlight genes that selected during domestication, or associated with agronomic traits, form repository candidate future research application. Despite opportunities cross-species comparative genomics, many population genomic datasets are not accessible, impeding secondary analyses. call more open collaborative approach promotes data sharing encourages contribution-based credit policy. number will continue rise decreasing costs, coupled advances analysis computational technologies. expansion, terms both scale quality, holds promise deeper insights into trait breeding design.
Language: Английский
Citations
34
Proceedings of the National Academy of Sciences, Journal Year: 2023, Volume and Issue: 120(12)
Published: March 17, 2023
This year marks the 25th anniversary of coinage term metabolome [S. G. Oliver et al ., Trends Biotech. 16 , 373–378 (1998)]. As field rapidly advances, it is important to take stock progress which has been made best inform disciplines future. While a medical-centric perspective on metabolomics recently published [M. Giera Cell Metab. 34 21–34 (2022)], this largely ignores pioneering contributions by plant and microbial science communities. In perspective, we provide contemporary overview all fields in employed with particular emphasis both methodological application breakthroughs sciences that have shaped evolving research discipline from very early days its establishment. will not cover types assays currently but focus mainly those utilizing mass spectrometry–based measurements since they are far most prominent. Having established historical context metabolomics, address key challenges facing offer potential approaches these can be faced. Most salient among fact vast majority features as yet annotated high confidence; what may refer definitive identification. We discuss standard compound libraries artificial intelligence technologies challenge use natural variance–based such genome-wide association studies attempt assign specific functions myriad structurally similar complex specialized metabolites. conclude stating our contention epic need greater cooperative efforts biologists, chemists, computer scientists an interest kingdoms life than date. Ultimately, better linkage genome data likely also needed particularly considering Earth BioGenome Project.
Language: Английский
Citations
30
Plants, Journal Year: 2024, Volume and Issue: 13(6), P. 758 - 758
Published: March 7, 2024
Landraces and indigenous varieties comprise valuable sources of crop species diversity. Their utilization in plant breeding may lead to increased yield enhanced quality traits, as well resilience various abiotic biotic stresses. Recently, new approaches based on the rapid advancement genomic technologies such deciphering pangenomes, multi-omics tools, marker-assisted selection (MAS), genome-wide association studies (GWAS), CRISPR/Cas9 gene editing greatly facilitated exploitation landraces modern breeding. In this paper, we present a comprehensive overview implementation highlight their importance pinpointing genetic basis desirable traits annual, perennial herbaceous, woody cultivated Mediterranean region. The need for further employment advanced -omic unravel full potential underutilized diversity is also indicated. Ultimately, large amount data emerging from investigation reveals source genes role mitigating ongoing risks posed by climate change agriculture food security highlighted.
Language: Английский
Citations
16