bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Oct. 13, 2023
Abstract
A
recent
study
has
shown
that
two
common
Caribbean
corals,
Montastrea
cavernosa
and
Siderastrea
siderea
,
in
the
Florida
Keys
each
consist
of
four
genetically
distinct
lineages.
These
lineages
are
strongly
specialized
to
a
certain
depth
and,
lesser
extent,
nearshore
or
offshore
habitat.
We
hypothesized
lineages’
environmental
specialization
is
at
least
part
due
regulatory
evolution,
which
would
be
manifested
as
emergence
groups
coregulated
genes
(“modules”)
demonstrating
lineage-specific
responses
different
reef
environments.
Our
hypothesis
also
predicted
belonging
such
modules
show
greater
genetic
divergence
between
than
other
genes.
Contrary
these
expectations,
cryptic
natural
variation
were
essentially
same
genome-wide
gene
coexpression
network
level.
Moreover,
none
identified
exhibit
elevated
between-lineage
divergence.
The
must,
therefore,
come
from
relatively
subtle
adjustments
function
regulation
not
detectable
level
and/or
involve
constituents
coral
holobiont
rather
host.
Nature Communications,
Journal Year:
2023,
Volume and Issue:
14(1)
Published: Jan. 6, 2023
Abstract
The
severity
of
marine
heatwaves
(MHWs)
that
are
increasingly
impacting
ocean
ecosystems,
including
vulnerable
coral
reefs,
has
primarily
been
assessed
using
remotely
sensed
sea-surface
temperatures
(SSTs),
without
information
relevant
to
heating
across
ecosystem
depths.
Here,
a
rare
combination
SST,
high-resolution
in-situ
temperatures,
and
sea
level
anomalies
observed
over
15
years
near
Moorea,
French
Polynesia,
we
document
subsurface
MHWs
have
paradoxical
in
comparison
SST
metrics
associated
with
unexpected
bleaching
Variations
the
depth
range
was
driven
by
mesoscale
(10s
100s
km)
eddies
altered
levels
thermocline
depths
decreased
(2007,
2017
2019)
or
increased
(2012,
2015,
2016)
internal-wave
cooling.
Pronounced
eddy-induced
reductions
internal
waves
during
early
2019
contributed
prolonged
MHW
unexpectedly
severe
bleaching,
subsequent
mortality
offsetting
almost
decade
recovery.
Variability
eddy
fields,
thus
depths,
is
expected
increase
climate
change,
which,
along
strengthening
deepening
stratification,
could
occurrence
ecosystems
historically
insulated
from
surface
cooling
effects
waves.
Ecology,
Journal Year:
2025,
Volume and Issue:
106(1)
Published: Jan. 1, 2025
Abstract
Understanding
how
foundation
species
recover
from
disturbances
is
key
for
predicting
the
future
of
ecosystems
in
Anthropocene.
Coral
reefs
are
dynamic
that
can
undergo
rapid
declines
coral
abundance
following
disturbances.
why
some
quickly
these
whereas
others
slowly
(or
not
at
all)
gives
insight
into
drivers
community
resilience.
From
2006
to
2010
on
fore
reef
Moorea,
French
Polynesia,
experienced
severe
reduced
cover
~46%
2005
<1%
2010.
Following
disturbances,
increased
2018.
Although
there
was
a
and
widespread
recovery
corals,
17
m
depth
recovered
more
than
10
depth.
We
investigated
different
rates
between
depths
2018
using
combination
time‐series
data
recruitment,
density,
growth,
mortality
addition
field
experiments
testing
effects
predation.
Propagule
did
influence
recovery,
as
density
recruits
(spat
<6
months
old)
differ
depths.
However,
juvenile
corals
(≤5
cm
diameter)
higher
m,
leading
densities
3.5
times
Yet,
were
no
differences
growth
These
results
point
an
early
life
stage
bottleneck
after
settlement,
resulting
greater
likely
driver
differential
used
test
mechanisms
could
drive
across
depths,
including
predation,
competition,
availability
suitable
substratum.
The
suggested
may
have
been
influenced
by
intensity
fish
attached
unfavorable
In
contrast,
macroalgae,
competitor,
explain
survival.
Our
work
suggests
top‐down
processes
substratum
quality
create
bottlenecks
disturbance.
Molecular Ecology,
Journal Year:
2022,
Volume and Issue:
31(20), P. 5368 - 5385
Published: Aug. 12, 2022
Abstract
The
congruence
between
phylogenies
of
tightly
associated
groups
organisms
(cophylogeny)
reflects
evolutionary
links
ecologically
important
interactions.
However,
despite
being
a
classic
example
an
obligate
symbiosis,
tests
cophylogeny
scleractinian
corals
and
their
photosynthetic
algal
symbionts
have
been
hampered
in
the
past
because
both
algae
contain
genetically
unresolved
morphologically
cryptic
species.
Here,
we
studied
co‐occurring,
Pocillopora
species
from
Mo′orea,
French
Polynesia,
that
differ
relative
abundance
across
depth.
We
constructed
new
host
(using
complete
mitochondrial
genomes,
genomic
loci,
thousands
single
nucleotide
polymorphisms)
Symbiodiniaceae
ITS2
psbA
ncr
markers)
tested
for
cophylogeny.
analysis
supported
presence
five
on
fore
reef
at
Mo′orea
mostly
hosted
either
Cladocopium
latusorum
or
C.
pacificum.
Only
hosting
also
taxa
Symbiodinium
Durusdinium
.
In
general,
phylogeny
mirrored
phylogeny.
Within
species,
lineages
differed
associations
with
haplotypes,
except
those
showing
evidence
nuclear
introgression,
depth
two
most
common
found
(haplotype
10),
has
so
far
only
sampled
warrants
formal
identification.
linked
these
suggest
symbiont
speciation
is
driven
by
niche
diversification
host,
but
there
still
flexibility
some
cases.
npj Biodiversity,
Journal Year:
2023,
Volume and Issue:
2(1)
Published: July 7, 2023
Tropical
coral
reefs
are
among
the
most
affected
ecosystems
by
climate
change
and
face
increasing
loss
in
coming
decades.
Effective
conservation
strategies
that
maximize
ecosystem
resilience
must
be
informed
accurate
characterization
of
extant
genetic
diversity
population
structure
together
with
an
understanding
adaptive
potential
keystone
species.
Here
we
analyzed
samples
from
Tara
Pacific
Expedition
(2016-2018)
completed
18,000
km
longitudinal
transect
Ocean
sampling
three
widespread
corals-Pocillopora
meandrina,
Porites
lobata,
Millepora
cf.
platyphylla-across
33
sites
11
islands.
Using
deep
metagenomic
sequencing
269
colonies
conjunction
morphological
analyses
variability
data,
can
show
despite
a
targeted
encompasses
multiple
cryptic
These
species
exhibit
disparate
biogeographic
patterns
and,
importantly,
distinct
evolutionary
identical
environmental
regimes.
Our
findings
demonstrate
on
basin
scale
trajectories
species-specific
only
part
predicted
environment.
This
highlights
integrate
multi-species
investigations
to
discern
genomic
footprints
shaped
selection
as
well
for
change.
Proceedings of the Royal Society B Biological Sciences,
Journal Year:
2023,
Volume and Issue:
290(2003)
Published: July 19, 2023
The
flexibility
to
associate
with
more
than
one
symbiont
may
considerably
expand
a
host's
niche
breadth.
Coral
animals
and
dinoflagellate
micro-algae
represent
of
the
most
functionally
integrated
widespread
mutualisms
between
two
eukaryotic
partners.
Symbiont
identity
greatly
affects
coral's
ability
cope
extremes
in
temperature
light.
Over
its
broad
distribution
across
Eastern
Pacific,
ecologically
dominant
branching
coral,
Pocillopora
grandis
,
depends
on
dinoflagellates
Durusdinium
glynnii
Cladocopium
latusorum
.
Measurements
skeletal
growth,
calcification
rates,
total
mass
increase,
calyx
dimensions,
reproductive
output
response
thermal
stress
were
used
assess
functional
performance
these
partner
combinations.
results
show
both
host–symbiont
combinations
displayed
similar
phenotypes;
however,
significant
differences
emerged
when
exposed
increased
temperatures.
Negligible
physiological
colonies
hosting
thermally
tolerant
D.
refute
prevailing
view
that
have
considerable
growth
tradeoffs.
Well
beyond
pocilloporid
are
found
Pacific
warm,
environmentally
variable,
near
shore
lagoonal
habitats.
While
rising
ocean
temperatures
threaten
persistence
contemporary
coral
reefs,
lessons
from
indicate
co-evolved
likely
spread
geographically
dominate
reef
ecosystems
future.
Integrative Zoology,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Jan. 23, 2024
Abstract
How
many
species
of
life
are
there
on
Earth?
This
is
a
question
that
we
want
to
know
but
cannot
yet
answer.
Some
scholars
speculate
the
number
may
reach
2.2
billion
when
considering
cryptic
diversity
and
each
morphology‐based
insect
contain
an
average
3.1
species.
With
nearly
two
million
described
species,
such
high
estimates
would
suggest
widespread.
The
development
molecular
delimitation
has
led
discovery
large
biodiversity
gradually
entered
our
field
vision
attracted
more
attention.
paper
introduces
concept
how
they
evolve,
methods
by
which
be
discovered
confirmed,
provides
theoretical
methodological
guidance
for
study
hidden
A
workflow
confirm
provided.
In
addition,
importance
reliability
multi‐evidence‐based
integrated
taxonomy
reaffirmed
as
way
better
standardize
decision‐making
processes.
Special
focus
increased
funding
needed
ensure
in
hyperdiverse
groups
discoverable
described.
An
future
will
naturally
arise
difficult
studied,
thereby,
finally
understand
rules
governing
evolution
maintenance
biodiversity.
Molecular Ecology,
Journal Year:
2024,
Volume and Issue:
33(9)
Published: April 7, 2024
Abstract
Endosymbiotic
dinoflagellates
(Symbiodiniaceae)
influence
coral
thermal
tolerance
at
both
local
and
regional
scales.
In
isolation,
the
effects
of
host
genetics,
environment,
disturbances
on
symbiont
communities
are
well
understood,
yet
their
combined
remain
poorly
resolved.
Here,
we
investigate
Symbiodiniaceae
across
1300
km
in
Australia's
Coral
Sea
Marine
Park
to
disentangle
these
interactive
effects.
We
identified
species‐level
resolution
for
three
species
(
Acropora
cf
humilis,
Pocillopora
verrucosa
,
meandrina
)
by
sequencing
two
genetic
markers
(ITS2
psbA
ncr
),
paired
with
genotype‐by‐sequencing
(DArT‐seq).
Our
samples
predominantly
returned
sequences
from
genus
Cladocopium
where
humilis
affiliated
C3k,
C.
pacificum
latusorum
.
Multivariate
analyses
revealed
that
symbionts
were
driven
strongly
environment
disturbances.
contrast,
partitioned
2.5‐fold
more
structure
than
environmental
structure.
Among
species,
genetics
explained
four
times
variation
P.
verrucosa.
The
concurrent
bleaching
event
2020
had
variable
impacts
communities,
consistent
patterns
A.
but
not
findings
demonstrate
how
macroscale
community
responses
gradients
depend
respective
population
Integrating
host,
symbiont,
data
will
help
forecast
adaptive
potential
corals
amidst
a
rapidly
changing
environment.
PLoS ONE,
Journal Year:
2025,
Volume and Issue:
20(1), P. e0316380 - e0316380
Published: Jan. 22, 2025
Marine
heatwaves
are
increasing
in
intensity
and
frequency
however,
responses
survival
of
reef
corals
vary
geographically.
Geographical
differences
thermal
tolerance
may
be
part
a
consequence
intraspecific
diversity,
where
high-diversity
localities
more
likely
to
support
heat-tolerant
alleles
that
promote
through
stress.
Here,
we
assessed
geographical
patterns
genetic
diversity
the
ubiquitous
coral
Pocillopora
damicornis
species
complex
using
428
sequences
Internal
Transcribed
Spacer
2
(ITS2)
region
across
44
sites
Pacific
Indian
Oceans.
We
focused
on
detecting
hotspots,
wherein
some
individuals
possess
gene
variants
tolerate
marine
heatwaves.
A
deep-learning,
multi-layer
neural-network
model
showed
location
played
major
role
with
mean
sea-surface
temperature
oceanic
regions
being
most
influential
predictor
variables
differentiating
diversity.
The
highest
estimate
variation
was
recorded
French
Polynesia
Southeast
Asia.
these
reefs
than
elsewhere
harbor
adaptive
potential
survive
climate
change,
so
managers
should
prioritize
when
forming
conservation
goals.
PLoS ONE,
Journal Year:
2025,
Volume and Issue:
20(2), P. e0318653 - e0318653
Published: Feb. 6, 2025
Cryptic
genetic
variation
is
increasingly
being
identified
in
numerous
coral
species,
with
prior
research
indicating
that
different
cryptic
lineages
can
exhibit
varied
responses
to
environmental
changes.
This
suggests
a
potential
link
between
and
local
conditions.
In
this
study,
we
investigate
how
communities
of
vary
along
gradients.
We
began
by
identifying
within
six
species
sampled
around
St.
Croix,
USVI
based
on
2b-RAD
sequencing
data.
then
analyzed
associations
the
distributions
across
(i.e.,
“cryptic
community
composition”)
ecoregions,
or
geographically
distinct
Our
findings
show
depth
more
significant
predictor
composition
than
ecoregions
most
influential
factor
among
40
abiotic
variables
characterize
ecoregions.
These
results
imply
are
influenced
both
conditions,
although
exact
factors
driving
these
patterns
remain
unknown.
Understanding
turnover
seascape
important
consider
when
outplanting
corals
restore
reef,
as
locally-adapted
may
have
differential
fitness