Ecography,
Journal Year:
2021,
Volume and Issue:
44(10), P. 1443 - 1452
Published: Aug. 29, 2021
Reliably
modelling
the
demographic
and
distributional
responses
of
a
species
to
environmental
changes
can
be
crucial
for
successful
conservation
management
planning.
Process‐based
models
have
potential
achieve
this
goal,
but
so
far
they
remain
underused
predictions
species'
distributions.
Individual‐based
offer
additional
capability
model
inter‐individual
variation
evolutionary
dynamics
thus
capture
adaptive
change.
We
present
RangeShiftR,
an
R
implementation
flexible
individual‐based
platform
which
simulates
eco‐evolutionary
in
spatially
explicit
way.
The
package
provides
fast
simulations
by
making
software
RangeShifter
available
widely
used
statistical
programming
R.
features
auxiliary
functions
support
specification
analysis
results.
provide
outline
package's
functionality,
describe
underlying
structure
with
its
main
components
short
example.
RangeShiftR
offers
substantial
complexity,
especially
dispersal
processes.
It
comes
elaborate
tutorials
comprehensive
documentation
facilitate
learning
help
at
all
levels.
As
core
code
is
implemented
C++,
computations
are
fast.
complete
source
published
under
public
licence,
adaptations
contributions
feasible.
facilitates
application
mechanistic
questions
operating
powerful
simulation
from
allows
effortless
interoperation
existing
packages
create
streamlined
workflows
that
include
data
preparation,
integrated
results
analysis.
Moreover,
strengthens
coupling
other
models.
Global Change Biology,
Journal Year:
2020,
Volume and Issue:
26(12), P. 6805 - 6812
Published: Oct. 5, 2020
Abstract
Interactions
among
species
are
likely
to
change
geographically
due
climate‐driven
range
shifts
and
in
intensity
physiological
responses
increasing
temperatures.
Marine
ectotherms
experience
temperatures
closer
their
upper
thermal
limits
the
paucity
of
temporary
refugia
compared
those
available
terrestrial
organisms.
Thermal
marine
also
vary
trophic
levels,
making
interactions
more
prone
changes
as
oceans
warm.
We
assessed
how
temperature
affects
reef
fish
Western
Atlantic
modeled
projections
occurrence,
biomass,
feeding
across
latitudes
climate
change.
Under
ocean
warming,
tropical
reefs
will
diminished
interactions,
particularly
herbivory
invertivory,
potentially
reinforcing
algal
dominance
this
region.
Tropicalization
events
occur
northern
hemisphere,
where
by
herbivores
is
predicted
expand
from
Caribbean
extratropical
reefs.
Conversely,
omnivores
decrease
area
with
minor
increases
southern
Brazil.
Feeding
invertivores
declines
all
future
predictions,
jeopardizing
a
critical
link.
Most
2050
can
significantly
affect
ecosystem
functioning,
causing
rise
novel
ecosystems.
Land,
Journal Year:
2022,
Volume and Issue:
11(4), P. 567 - 567
Published: April 12, 2022
The
spread
of
invasive
species
is
a
threat
to
global
biodiversity.
Japanese
beetle
native
Japan,
but
alien
populations
this
insect
occur
in
North
America,
and
recently,
also
southern
Europe.
This
was
recently
included
on
the
list
priority
European
concern,
as
it
highly
agricultural
pest.
Thus,
study,
we
aimed
at
(i)
assessing
its
current
distribution
range,
identifying
areas
potential
invasion,
(ii)
predicting
using
future
climatic
land-use
change
scenarios
for
2050.
We
collected
occurrences
available
citizen
science
platform
iNaturalist,
combined
data
with
predictors
Bayesian
framework,
specifically
integrated
nested
Laplace
approximation,
stochastic
partial
differential
equation.
found
that
mainly,
positively,
driven
by
percentage
croplands,
annual
range
temperature,
habitat
diversity,
human
settlements,
population
density;
negatively
related
distance
airports,
elevation,
mean
temperature
diurnal
wetlands,
waters.
As
result,
based
conditions,
likely
47,970,200
km2,
while
will
from
between
53,418,200
59,126,825
according
2050
scenarios.
concluded
high-risk
species,
able
find
suitable
conditions
colonization
several
regions
around
globe,
especially
light
ongoing
change.
strongly
recommend
strict
biosecurity
checks
quarantines,
well
regular
pest
management
surveys,
order
reduce
spread.
PeerJ,
Journal Year:
2022,
Volume and Issue:
10, P. e12783 - e12783
Published: Feb. 14, 2022
The
use
of
species
distribution
models
(SDMs)
has
rapidly
increased
over
the
last
decade,
driven
largely
by
increasing
observational
evidence
distributional
shifts
terrestrial
and
aquatic
populations.
These
permit,
for
example,
quantification
range
shifts,
estimation
co-occurrence,
association
habitat
to
abundance.
complexity
contemporary
SDMs
presents
new
challenges—as
choices
among
modeling
options
increase,
it
is
essential
understand
how
these
affect
model
outcomes.
Using
a
combination
original
analysis
literature
review,
we
synthesize
effects
three
common
in
semi-parametric
predictive
process
modeling:
structure,
spatial
extent
data,
scale
predictions.
To
illustrate
choices,
develop
case
study
centered
around
sablefish
(
Anoplopoma
fimbria
)
on
west
coast
USA.
represent
decisions
necessary
virtually
all
ecological
applications
methods,
are
important
because
consequences
impact
derived
quantities
interest
e.g
.,
estimates
population
size
their
management
implications).
Truncating
data
near
observed
edge,
or
using
that
misspecified
terms
covariates
spatiotemporal
fields,
led
bias
biomass
trends
mean
compared
from
full
dataset
appropriate
structure.
In
some
cases,
suboptimal
may
be
unavoidable,
but
understanding
tradeoffs
impacts
predictions
critical.
We
seemingly
small
often
made
out
necessity
simplicity,
can
scientific
advice
informing
decisions—potentially
leading
erroneous
conclusions
about
changes
abundance
precision
such
estimates.
For
show
incorrect
could
cause
overestimation
abundance,
which
result
resulting
overfishing.
Based
findings
gaps,
outline
frontiers
SDM
development.
Wildlife Biology,
Journal Year:
2024,
Volume and Issue:
2024(3)
Published: Feb. 8, 2024
Animals
determine
their
daily
movement
trajectories
in
response
to
a
network
of
ecological
processes,
including
interactions
with
other
organisms,
memories
previous
events,
and
the
changing
environment.
These
combine
cause
emergent
space
use
patterns
observed
over
longer
periods
time,
such
as
whole
season.
Understanding
which
processes
these
emerge,
how,
requires
process‐based
modelling
approach.
Individual‐based
decisions
can
be
described
system
partial‐differential
equations
(PDEs)
produce
dynamic
description
built
from
underlying
process.
Here
we
PDE‐based
models
step‐selection
analysis
investigate
combined
effects
three
established
that
partially
shape
use:
1)
heterogeneous
environment;
2)
environmental
markings
moving
conspecifics;
3)
memory
direct
conspecifics.
We
apply
this
framework
large
GPS‐based
dataset
white‐tailed
deer
Odocoileus
virginianus
southeastern
US.
fit
at
population
level
provide
predictive
models,
then
tailor
individual
deer.
specifically
incorporate
relationships
between
each
possible
pair
define
animal's
responses
unique
local
environments
using
separate
integrated
analyses.
show
how
movements
yield
animal
distributions,
full
generalised
so
it
may
applied
any
species
simultaneously
responding
multiple
potentially
interacting
stimuli
(e.g.
sociality,
morphology,
etc.).
found
bucks
had
highly
varied
preferences
for
vegetation,
but
were
shaping
conspecific
interactions,
dependent
on
two
advocate
increased
consideration
individual‐based
rules
determinants
realized
use,
particularly
affect
distributions
entire
species.
Canadian Journal of Fisheries and Aquatic Sciences,
Journal Year:
2024,
Volume and Issue:
81(6), P. 687 - 698
Published: March 5, 2024
Machine
learning
occupies
a
central
position
in
the
modeling
of
fish
distribution
patterns.
The
augmentation
explanatory
variables
habitat
through
many
kinds
observational
methodologies
necessitates
discernment
an
optimal
combination
these
for
modeling.
We
proposed
feature
selection
technique,
recursive
elimination
with
cross-validation
(RFECV),
to
determine
combinations
yellowfin
tuna
Pacific
Ocean.
Four
tree-based
models,
random
forest,
eXtreme
Gradient
Boosting,
Light
Boosting
Machine,
and
categorical
boosting
driven
by
RFECV,
were
developed
using
comprehensive
fisheries
biotic/abiotic
data.
Habitat
including
sea
temperature,
dissolved
oxygen
concentration,
chlorophyll-a
salinity,
surface
height
identified
as
significant
features
all
models.
models
trained
corresponding
selected
variables,
employed
predict
spatiotemporal
from
1995
2019.
results
obtained
could
inform
useful
knowledge
sustainable
exploitation
Ocean
furnish
benchmark
machine-learning-based
other
pelagic
species.
Ecography,
Journal Year:
2024,
Volume and Issue:
2024(5)
Published: March 22, 2024
Species
distribution
models
(SDMs)
are
extensively
used
to
estimate
species–environment
relationships
(SERs)
and
predict
species
across
space
time.
For
this
purpose,
it
is
key
choose
relevant
spatial
grains
for
predictor
response
variables
at
the
onset
of
modelling
process.
However,
environmental
often
derived
from
large‐scale
climate
a
grain
that
can
be
coarser
than
one
variable.
Such
area‐to‐point
misalignment
bias
estimates
SER
jeopardise
robustness
predictions.
We
virtual
approach,
running
simulations
different
levels
seek
statistical
solutions
problem.
specifically
compared
accuracy
predictive
performances,
assessed
degrees
heterogeneity
in
conditions,
three
SDMs:
GLM,
GLM
Berkson
error
model
(BEM)
accounts
fine‐grain
within
coarse‐grain
cells.
Only
BEM
accurately
relatively
data
(up
50
times
grain),
while
two
GLMs
provide
flattened
SER.
all
perform
poorly
when
predicting
data,
particularly
environments
more
heterogeneous
training
conditions.
Conversely,
decreasing
relative
dataset
reduces
biases.
Because
predictions
made
covariate‐grain
displays
lower
performance
GLMs.
Thus,
standard
selection
methods
would
fail
select
best
SERs
(here,
BEM),
which
could
lead
false
interpretations
about
drivers
distributions.
Overall,
we
conclude
BEM,
because
robustly
grain,
holds
great
promise
overcome
misalignment.