The ISME Journal,
Journal Year:
2023,
Volume and Issue:
17(7), P. 967 - 975
Published: April 14, 2023
Abstract
Nitrogen
(N)
is
frequently
limiting
to
plant
growth,
in
part
because
most
soil
N
present
as
polymeric
organic
compounds
that
are
not
readily
taken
up
by
plants.
Microbial
depolymerization
of
these
large
macromolecular
N-substrates
gradually
releases
available
inorganic
N.
While
many
studies
have
researched
and
modeled
controls
on
matter
formation
bulk
mineralization,
the
ecological—spatial,
temporal
phylogenetic—patterns
underlying
degradation
remain
unclear.
We
analyzed
48
time-resolved
metatranscriptomes
quantified
N-depolymerization
gene
expression
resolve
differential
habitat
time
specific
taxonomic
groups
gene-based
guilds.
observed
much
higher
extracellular
serine-type
proteases
than
other
N-degrading
enzymes,
with
protease
predatory
bacteria
declining
patterns
driven
presence
(Gammaproteobacteria)
or
absence
(Thermoproteota)
live
roots
root
detritus
(Deltaproteobacteria
Fungi).
The
primary
chitinase
chit1
was
more
highly
expressed
eukaryotes
near
detritus,
suggesting
predation
fungi.
In
some
lineages,
increased
over
suggests
competitiveness
rhizosphere
age
(Chloroflexi).
Phylotypes
from
genera
had
could
benefit
nutrition,
for
example,
we
identified
a
Janthinobacterium
phylotype
two
Burkholderiales
depolymerize
young
Rhizobacter
elevated
levels
mature
roots.
These
taxon-resolved
results
provide
an
ecological
read-out
microbial
interactions
dynamics
microhabitats
be
used
target
potential
bioaugmentation
strategies.
The Science of The Total Environment,
Journal Year:
2024,
Volume and Issue:
946, P. 174178 - 174178
Published: June 24, 2024
Agricultural
management
practices
can
induce
changes
in
soil
aggregation
structure
that
alter
the
microbial
nitrous
oxide
(N2O)
production
and
reduction
processes
occurring
at
microscale,
leading
to
large-scale
consequences
for
N2O
emissions.
However,
mechanistic
understanding
of
how
organic
fertilization
affects
these
context-dependent
small-scale
emissions
associated
key
nitrogen
(N)
cycling
communities
is
lacking.
Here,
denitrification
gas
(N2O,
N2)
potential
capacity
N2O/(N2O
+
were
assessed
by
automated
chromatography
different
aggregates
(>2
mm,
2–0.25
<0.25
mm),
while
sequencing
qPCR
N2O-producting
(nirK
nirS)
reducing
(nosZ
clade
I
II)
genes.
The
results
indicated
reduced
enhancing
conversion
N2
all
aggregate
sizes.
Moreover,
hotspots
occurred
smaller
aggregates,
with
degree
depending
on
fertilizer
type
application
rate.
Further,
significantly
higher
abundance
diversity
nosZ
clades
relative
nirK
nirS
revealed
complete
promoted
through
selection
denitrifying
microscales
favouring
reduction.
Communities
high
low
emission
treatments
form
modules
specific
sequence
types
which
may
be
diagnostic
levels.
Taken
together,
findings
suggest
fertilizers
influencing
factors
patterns
niche
partitioning
between
N2O-producing
within
overall
are
more
likely
consume
than
emit
N2O.
These
helpful
strengthening
ability
predict
from
agricultural
soils
under
as
well
contributing
development
net-zero
carbon
strategies
sustainable
agriculture.
Science Advances,
Journal Year:
2023,
Volume and Issue:
9(6)
Published: Feb. 8, 2023
Even
a
small
net
increase
in
soil
organic
carbon
(SOC)
mineralization
will
cause
substantial
the
atmospheric
CO2
concentration.
It
is
widely
recognized
that
SOC
within
deep
critical
zones
(2
to
12
m
depth)
slower
and
much
less
influenced
by
anthropogenic
disturbance
when
compared
of
surface
soil.
Here,
we
showed
20
years
nitrogen
(N)
fertilization
enriched
zone
with
nitrate,
almost
doubling
rate.
This
result
was
supported
corresponding
increases
expressions
functional
genes
typical
recalcitrant
degradation
enzyme
activities.
The
released
had
similar
14C
age
(6000
10,000
before
present).
Our
results
indicate
N
crops
may
enhance
emissions
from
atmosphere
through
previously
disregarded
mechanism.
provides
another
reason
for
markedly
improving
management
fertilized
agricultural
soils.
Journal of Applied Ecology,
Journal Year:
2023,
Volume and Issue:
60(7), P. 1364 - 1375
Published: March 30, 2023
Abstract
Plant
species
diversity
(PSD)
regulates
ecosystem
structure
and
functions,
is
a
key
issue
we
need
to
consider
when
design
vegetation
restoration
projects.
Increasing
PSD
has
been
shown
promote
or
decrease
soil
nitrogen
(N)
availability,
but
the
underlying
mechanisms
have
not
well
explored.
Here,
45
plots
with
Shannon–Weiner
indices
ranging
from
0.15
3.57
were
selected
in
subtropical
forest
explore
effect
of
on
N
transformations.
Higher
significantly
enhanced
rates
gross
mineralization,
nitrification,
microbial
immobilization,
net
nitrification
contents
total
inorganic
N.
Structural
equation
modelling
showed
that
indirectly
impacted
transformations
via
its
roles
regulating
organic
matter,
mineral
traits.
stimulated
mineralization
mainly
positive
effects
biomass
content
gene
abundances
chiA
,
archaeal
bacterial
amoA
while
increased
immobilization
due
stimulation
matter.
Synthesis
applications
.
Our
findings
highlight
crucial
role
stimulating
availability
provide
mechanistic
understanding
which
can
be
integrated
into
Earth
system
models
better
predict
C
sequestration
response
PSD.
The ISME Journal,
Journal Year:
2023,
Volume and Issue:
17(7), P. 967 - 975
Published: April 14, 2023
Abstract
Nitrogen
(N)
is
frequently
limiting
to
plant
growth,
in
part
because
most
soil
N
present
as
polymeric
organic
compounds
that
are
not
readily
taken
up
by
plants.
Microbial
depolymerization
of
these
large
macromolecular
N-substrates
gradually
releases
available
inorganic
N.
While
many
studies
have
researched
and
modeled
controls
on
matter
formation
bulk
mineralization,
the
ecological—spatial,
temporal
phylogenetic—patterns
underlying
degradation
remain
unclear.
We
analyzed
48
time-resolved
metatranscriptomes
quantified
N-depolymerization
gene
expression
resolve
differential
habitat
time
specific
taxonomic
groups
gene-based
guilds.
observed
much
higher
extracellular
serine-type
proteases
than
other
N-degrading
enzymes,
with
protease
predatory
bacteria
declining
patterns
driven
presence
(Gammaproteobacteria)
or
absence
(Thermoproteota)
live
roots
root
detritus
(Deltaproteobacteria
Fungi).
The
primary
chitinase
chit1
was
more
highly
expressed
eukaryotes
near
detritus,
suggesting
predation
fungi.
In
some
lineages,
increased
over
suggests
competitiveness
rhizosphere
age
(Chloroflexi).
Phylotypes
from
genera
had
could
benefit
nutrition,
for
example,
we
identified
a
Janthinobacterium
phylotype
two
Burkholderiales
depolymerize
young
Rhizobacter
elevated
levels
mature
roots.
These
taxon-resolved
results
provide
an
ecological
read-out
microbial
interactions
dynamics
microhabitats
be
used
target
potential
bioaugmentation
strategies.