Citrus genomes: Past, present and future DOI Creative Commons
Upuli Nakandala, Agnelo Furtado, Robert J Henry

et al.

Horticulture Research, Journal Year: 2025, Volume and Issue: 12(5)

Published: Feb. 4, 2025

Abstract Over the past decade, genome sequencing and assembly approaches have been greatly improved, resulting in of many genomes for citrus, including wild, domesticated, citrus-related genomes. Improvements technologies led to assembled with higher completeness, contiguity, quality, accuracy that facilitated annotation analysis. This review summarizes evolution sequencing, assembly, leading citrus over 11 years, a comprehensive evaluation their major findings applications. Of 50 now available, 35 chromosome level 15 draft level, 14 were haplotype-resolved assemblies. To date there four pangenome-wide studies citrus. The very recent long-read achieved >99% >98% completeness (BUSCO), respectively. However, some early are not same high quality as more recently sequenced would benefit from re-sequencing. A pangenome based upon larger set species genotypes at haplotype allow genomics deliver maximum benefits improvement research.

Language: Английский

Citrus genomes: Past, present and future DOI Creative Commons
Upuli Nakandala, Agnelo Furtado, Robert J Henry

et al.

Horticulture Research, Journal Year: 2025, Volume and Issue: 12(5)

Published: Feb. 4, 2025

Abstract Over the past decade, genome sequencing and assembly approaches have been greatly improved, resulting in of many genomes for citrus, including wild, domesticated, citrus-related genomes. Improvements technologies led to assembled with higher completeness, contiguity, quality, accuracy that facilitated annotation analysis. This review summarizes evolution sequencing, assembly, leading citrus over 11 years, a comprehensive evaluation their major findings applications. Of 50 now available, 35 chromosome level 15 draft level, 14 were haplotype-resolved assemblies. To date there four pangenome-wide studies citrus. The very recent long-read achieved >99% >98% completeness (BUSCO), respectively. However, some early are not same high quality as more recently sequenced would benefit from re-sequencing. A pangenome based upon larger set species genotypes at haplotype allow genomics deliver maximum benefits improvement research.

Language: Английский

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