The Journal of Chemical Physics,
Journal Year:
2024,
Volume and Issue:
160(3)
Published: Jan. 18, 2024
Fluorescein,
one
of
the
brightest
fluorescent
dye
molecules,
is
a
widely
used
fluorophore
for
various
applications
from
biomedicine
to
industry.
The
dianionic
form
fluorescein
responsible
its
high
fluorescence
quantum
yield.
Interestingly,
molecule
was
found
be
nonfluorescent
in
gas
phase.
This
characteristic
attributed
photodetachment
process,
which
out-competes
emission
In
this
work,
we
show
that
calculated
vertical
and
adiabatic
detachment
energies
dianion
solvent
phases
account
drastic
differences
observed
their
characteristics.
functional
dependence
these
on
dianion’s
microsolvation
systematically
investigated.
performance
different
models
also
assessed.
higher
thermodynamic
stability
over
monoanion
doublet
phase
plays
crucial
role
quenching
activating
radiative
channel
with
Nature Communications,
Journal Year:
2023,
Volume and Issue:
14(1)
Published: Feb. 13, 2023
Metal-free
electrocatalysts
represent
a
main
branch
of
active
materials
for
oxygen
evolution
reaction
(OER),
but
they
excessively
rely
on
functionalized
conjugated
carbon
materials,
which
substantially
restricts
the
screening
potential
efficient
carbonaceous
electrocatalysts.
Herein,
we
demonstrate
that
mesostructured
polyacrylate
hydrogel
can
afford
an
unexpected
and
exceptional
OER
activity
-
par
with
benchmark
IrO2
catalyst
in
alkaline
electrolyte,
together
high
durability
good
adaptability
various
pH
environments.
Combined
theoretical
electrokinetic
studies
reveal
positively
charged
atoms
within
carboxylate
units
are
intrinsically
toward
OER,
spectroscopic
operando
characterizations
also
identify
fingerprint
superoxide
intermediate
generated
polymeric
backbone.
This
work
expands
scope
metal-free
by
providing
new
class
huge
extension
potentials.
International Journal of Molecular Sciences,
Journal Year:
2023,
Volume and Issue:
24(7), P. 6785 - 6785
Published: April 5, 2023
The
rational
design
of
molecularly
imprinted
polymers
has
evolved
along
with
state-of-the-art
experimental
imprinting
strategies
taking
advantage
sophisticated
computational
tools.
In
silico
methods
enable
the
screening
and
simulation
innovative
polymerization
components
conditions
superseding
conventional
formulations.
combined
use
quantum
mechanics,
molecular
dynamics
allows
for
macromolecular
modelling
to
study
systematic
translation
from
pre-
post-polymerization
stage.
However,
predictive
high-performance
computing
advance
MIP
development
are
neither
fully
explored
nor
practiced
comprehensively
on
a
routine
basis
date.
this
review,
we
focus
different
steps
process
discuss
appropriate
that
may
assist
in
optimizing
associated
strategies.
We
potential,
challenges,
limitations
approaches
including
ML/AI
present
perspectives
guide
next-generation
accelerating
discovery
templated
materials.
The Journal of Physical Chemistry A,
Journal Year:
2024,
Volume and Issue:
128(31), P. 6440 - 6449
Published: July 25, 2024
A
new
hybrid
discrete-continuum
approach
named
the
cluster-continuum
static
approximation
(CCSA)
has
been
proposed
for
acetonitrile
solvent.
The
continuum
part
uses
conductor-like
polarizable
model
electrostatic
and
a
surface
area-dependent
term
nonelectrostatic
solvation.
CCSA
includes
only
one
explicit
solvent
molecule
damping
function,
which
makes
method
reduce
to
pure
solvation
in
case
of
weaker
potential
mean
force
solute-solvent
interaction.
performance
was
tested
22
anions
cations,
including
challenge
species
that
cannot
be
adequately
described
by
comparison
done
with
widely
used
density
(SMD)
model.
For
anions,
reduces
same
as
SMD
model,
standard
deviation
signed
error
(SD-MSE)
2.7
kcal
mol
Journal of Computational Chemistry,
Journal Year:
2023,
Volume and Issue:
45(7), P. 419 - 429
Published: Nov. 19, 2023
Abstract
A
prerequisite
for
the
computational
prediction
of
molecular
properties
like
conformational
energies
biomolecules
is
a
reliable,
robust,
and
computationally
affordable
method
usually
selected
according
to
its
performance
relevant
benchmark
sets.
However,
most
these
sets
comprise
molecules
in
gas
phase
do
not
cover
interactions
with
solvent,
even
though
typically
occur
aqueous
solution.
To
address
this
issue,
we
introduce
explicit
water
solvated
version
gas‐phase
set
containing
196
conformers
13
peptides
other
macrocycles,
namely
MPCONF196
[J.
Řezáč
et
al.,
JCTC
2018
,
14
1254–1266],
provide
very
accurate
PNO‐LCCSD(T)‐F12b/AVQZ'
reference
values.
The
novel
solvMPCONF196
features
two
additional
challenges
beyond
description
phase:
conformer–water
water–water
interactions.
overall
best
performing
double
hybrid
revDSDPBEP86‐D4/def2‐QZVPP
yielding
almost
coupled
cluster
quality.
Furthermore,
some
(meta‐)GGAs
functionals
B97M‐V
B97M‐D
large
basis
reproduce
an
MAD
below
1
kcal
mol
.
If
more
efficient
methods
are
required,
composite
DFT‐method
rSCAN‐3c
(MAD
1.2
mol)
good
alternative,
when
polypeptides
or
macrocycles
than
500–1000
atoms
focus,
semi‐empirical
GFN2‐xTB
MMFF94
force
field
(for
systems)
recommended.
The Journal of Organic Chemistry,
Journal Year:
2025,
Volume and Issue:
90(10), P. 3673 - 3683
Published: March 1, 2025
The
physical
model
used
to
compute
natural
phenomena
is
crucial
for
accurate
structural
and
mechanism
elucidation.
Specifically,
we
examine
the
mechanistic
consequences
of
an
explicit
LDA
dimer,
THF,
N-oxide
aggregate
formation
at
rate-limiting
step
two
competing
reaction
pathways
involving
nitrogen–oxygen
dissociation
alpha-hydrogen
deprotonation
azomethine
ylide
formation.
We
free
energies
activation
using
M06-2x,
B3LYP,
HCTH407
functionals
second-order
Møller–Plesset
perturbation
theory
with
Dunning's
correlation
consistent
basis
sets
cc-pV[D,T]Z,
corrected
entropy
by
Whitesides'
volume
theory.
Our
discrete-continuum
approach
uses
Tomasi's
polarizable
continuum
complement
quantum
system
incorporating
bulk
solvent
effects.
Building
off
aggregation
work
developed
Collum
coworkers,
demonstrate
that
inclusion
can
have
a
profound
impact
on
predicted
energy
barriers
alignment
experimental
product
distributions.
In
polarized
system,
use
more
sophisticated
balanced
underscores
importance
correct
pattern
aggregation.
results
identify
unique
incorporates
N-oxide,
formation,
which
suggests
third
dimension
John
Pople
diagram
enhance
accuracy
through
sophistication.
Chemistry - A European Journal,
Journal Year:
2022,
Volume and Issue:
29(1)
Published: Oct. 4, 2022
The
protonation
of
commercially
available
porphyrin
ligands
yields
a
class
bifunctional
catalysts
able
to
promote
the
synthesis
N-alkyl
oxazolidinones
by
CO
Journal of the American Chemical Society,
Journal Year:
2024,
Volume and Issue:
146(27), P. 18606 - 18615
Published: June 28, 2024
In
recent
years,
progress
has
been
made
in
the
development
of
catalytic
methods
that
allow
remote
functionalizations
based
on
alkene
isomerization.
contrast,
protocols
alkyne
isomerization
are
comparatively
rare.
Herein,
we
report
a
general
Pd-catalyzed
long-range
alkynyl
alcohols.
Starting
from
aryl-,
heteroaryl-,
or
alkyl-substituted
precursors,
optimized
system
provides
access
preferentially
to
thermodynamically
more
stable
α,β-unsaturated
aldehydes
and
is
compatible
with
potentially
sensitive
functional
groups.
We
showed
migration
both
π-components
carbon–carbon
triple
bond
can
be
sustained
over
several
methylene
units.
Computational
investigations
served
shed
light
key
elementary
steps
responsible
for
reactivity
selectivity.
These
include
an
unorthodox
phosphine-assisted
deprotonation
rather
than
conventional
β-hydride
elimination
final
tautomerization
event.
ACS Catalysis,
Journal Year:
2024,
Volume and Issue:
14(17), P. 12769 - 12782
Published: Aug. 9, 2024
The
ligand,
P(o-tolyl)3,
is
ubiquitous
in
applied
synthetic
chemistry
and
catalysis,
particularly
Pd-catalyzed
processes,
which
typically
include
Pd(OAc)2
(most
commonly
used
as
Pd3(OAc)6)
a
precatalyst.
Herrmann–Beller
palladacycle
[Pd(C^P)(μ2-OAc)]2
(where
C^P
=
monocyclopalladated
P(o-tolyl)3)
easily
formed
from
reaction
of
with
P(o-tolyl)3.
mechanisms
by
this
precatalyst
system
operates
are
inherently
complex,
studies
previously
implicating
Pd
nanoparticles
(PdNPs)
reservoirs
for
active
Pd(0)
species
arylative
cross-coupling
reactions.
In
study,
we
reveal
the
fascinating,
nontrivial
behavior
palladacyclic
group.
First,
presence
hydroxide
base,
readily
converted
into
an
activated
form,
[Pd(C^P)(μ2-OH)]2,
serves
conduit
activation
to
catalytically
relevant
species.
Second,
palladacyclization
imparts
unique
stability
catalytic
under
conditions,
bringing
play
Pd(II)/Pd(IV)
mechanism.
For
benchmark
Suzuki–Miyaura
(SMCC)
reaction,
there
shift
mononuclear
pathway
PdNP-controlled
during
reaction.
[Pd(C^P)(μ2-OH)]2
has
been
studied
using
arylphosphine-stabilized
boronic
acid
low-temperature
NMR
spectroscopic
analysis,
sheds
light
on
preactivation
step,
water
and/or
being
critical
formation
Pd(II)
situ
monitoring
demonstrated
that
sensitivity
structure
arylboron
pinacol.
This
work,
taken
together,
highlights
mechanistic
complexity
accompanying
use
systems.
It
builds
recent
findings
involving
related
Pd(OAc)2/PPh3
systems
form
higher
order
Pdn
clusters
PdNPs
conditions.
Thus,
generally,
one
needs
be
cautious
assumption
Pd(OAc)2/tertiary
phosphine
mixtures
cleanly
deliver
"Pd(0)Ln"
any
assessment
individual
ligands
may
need
case-by-case
basis.
Physical Chemistry Chemical Physics,
Journal Year:
2025,
Volume and Issue:
27(18), P. 9350 - 9368
Published: Jan. 1, 2025
Stability
constants
of
simple
reactions
involving
addition
the
NO3-
ion
to
hydrated
metal
complexes,
[M(H2O)x]n+
are
calculated
with
a
computational
workflow
developed
using
cloud
computing
resources.
The
performs
conformational
searches
for
complexes
at
both
low
and
high
levels
theories
in
conjunction
continuum
solvation
model
(CSM).
low-level
theory
is
mainly
used
initial
searches,
which
complemented
high-level
density
functional
CSM
framework
determine
coordination
chemistry
relevant
stability
constant
calculations.
In
this
regard,
lowest
energy
conformations
found
obtain
reaction
free
energies
one
where
M
represents
Fe(II),
Fe(III),
Sr(II),
Ce(III),
Ce(IV),
U(VI),
respectively.
Structural
analysis
hundreds
optimized
geometries
reveals
that
coordinates
Fe(II)
Fe(III)
either
monodentate
or
bidentate
manner.
Interestingly,
lowest-energy
metal-nitrate
exhibit
number
6
while
seven-coordinated
approximately
2
kcal
mol-1
higher
energy.
Notably,
configuration
more
stable
than
six-coordinated
(monodentate
bidentate)
by
few
thermal
units.
contrast,
U(VI)
ions
predominantly
coordinate
manner,
exhibiting
typical
numbers
7,
9,
5,
accordingly
linear
approaches
account
systematic
errors
good
agreements
obtained
between
available
experimental
data.