Phylogenetic exploration, codon usage bias, and genomic divergence in Hydrocotyle: a comparative plastome study across different geographical locations DOI
Bimal K. Chetri, Alok Senapati, Rahul G. Shelke

et al.

Genetica, Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 26, 2024

Language: Английский

Decoding the Chloroplast Genome of Tetrastigma (Vitaceae): Variations and Phylogenetic Selection Insights DOI Open Access
Junqiao Zhu, Yang Huang,

Weiguo Chai

et al.

International Journal of Molecular Sciences, Journal Year: 2024, Volume and Issue: 25(15), P. 8290 - 8290

Published: July 29, 2024

(Vitaceae) is known for its ornamental, medicinal, and ecological significance. However, the structural variational characteristics of

Language: Английский

Citations

3
Complete Chloroplast Genomes and the Phylogenetic Analysis of Three Native Species of Paeoniaceae from the Sino-Himalayan Flora Subkingdom DOI Open Access

Hanbing Cai,

Rong Xu,

Ping Tian

et al.

International Journal of Molecular Sciences, Journal Year: 2023, Volume and Issue: 25(1), P. 257 - 257

Published: Dec. 23, 2023

Paeonia delavayi var. lutea, angustiloba, and ludlowii are Chinese endemics that belong to the Paeoniaceae family have vital medicinal ornamental value. It is often difficult classify plants based on their morphological characteristics, limited genomic information has strongly hindered molecular evolution phylogenetic studies of Paeoniaceae. In this study, we sequenced, assembled, annotated chloroplast genomes P. ludlowii. The these strains were comparatively analyzed, relationships divergence times inferred. These three exhibited a typical quadripartite structure 152,687–152,759 bp in length. Each genome contains 126–132 genes, including 81–87 protein-coding 37 transfer RNAs, 8 ribosomal RNAs. addition, had 61–64 SSRs, with mononucleotide repeats being most abundant. codon bias patterns species tend use codons ending A/U. Six regions high variability identified (psbK-psbL, trnG-UCC, petN-psbM, psbC, rps8-rpl14, ycf1) can be used as DNA markers for taxonomic analysis. Ka/Ks ratio indicates positive selection rps18 gene associated self-replication. analysis 99 from Saxifragales clarified revealed monophyletic groups sisters delavayi. Divergence time estimation two evolutionary divergences early Oligocene Miocene. Afterward, they underwent rapid adaptive radiation Pliocene Pleistocene when formed. results study enrich reveal new insights into phylogeny

Language: Английский

Citations

8
Analysis of chloroplast genome characteristics and codon usage bias in 14 species of Annonaceae DOI
Xiang Hu,

Yaqi Li,

Fuxuan Meng

et al.

Functional & Integrative Genomics, Journal Year: 2024, Volume and Issue: 24(3)

Published: May 27, 2024

Language: Английский

Citations

1
Untangling the Evolutionary Tapestry: Plastome Insights Unveiled from Sieruela rutidosperma to Cleomaceae DOI
Bimal K. Chetri, Alok Senapati, Rahul G. Shelke

et al.

Biology Bulletin, Journal Year: 2024, Volume and Issue: 51(S1), P. S44 - S51

Published: Dec. 1, 2024

Language: Английский

Citations

0
Phylogenetic exploration, codon usage bias, and genomic divergence in Hydrocotyle: a comparative plastome study across different geographical locations DOI
Bimal K. Chetri, Alok Senapati, Rahul G. Shelke

et al.

Genetica, Journal Year: 2024, Volume and Issue: unknown

Published: Sept. 26, 2024

Language: Английский

Citations

0